Wall clock time and date at job start Mon Mar 30 2020 02:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47173 * 2 1 4 4 C 1.38234 * 120.00156 * 269.72911 * 3 2 1 5 5 C 1.38232 * 120.00285 * 179.78693 * 4 3 2 6 6 C 1.38244 * 119.99575 * 0.47003 * 5 4 3 7 7 C 1.50693 * 119.99826 * 179.78948 * 6 5 4 8 8 H 1.09003 * 109.47474 * 199.97543 * 7 6 5 9 9 N 1.46503 * 109.47479 * 319.97375 * 7 6 5 10 10 C 1.34776 * 120.00521 * 205.00253 * 9 7 6 11 11 O 1.21692 * 119.99582 * 359.97438 * 10 9 7 12 12 C 1.46373 * 120.00116 * 180.02562 * 10 9 7 13 13 H 1.07997 * 120.00058 * 353.94646 * 12 10 9 14 14 C 1.40047 * 119.99607 * 173.95216 * 12 10 9 15 15 N 1.30667 * 120.00398 * 6.14970 * 14 12 10 16 16 Si 1.86804 * 119.99724 * 186.15519 * 14 12 10 17 17 H 1.48498 * 109.47263 * 94.98161 * 16 14 12 18 18 H 1.48500 * 109.47172 * 214.98461 * 16 14 12 19 19 H 1.48502 * 109.46815 * 334.98156 * 16 14 12 20 20 C 1.53003 * 109.47575 * 79.97487 * 7 6 5 21 21 C 1.53002 * 109.47509 * 179.97438 * 20 7 6 22 22 C 1.52999 * 109.47019 * 299.99971 * 20 7 6 23 23 C 1.38230 * 119.99843 * 359.76454 * 6 5 4 24 24 C 1.38228 * 119.99919 * 90.00662 * 3 2 1 25 25 H 1.08999 * 109.47127 * 59.99329 * 1 2 3 26 26 H 1.09006 * 109.46556 * 299.99778 * 1 2 3 27 27 H 1.08996 * 109.46987 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47584 * 120.00394 * 2 1 3 29 29 H 1.09006 * 109.47009 * 240.00505 * 2 1 3 30 30 H 1.08003 * 119.99893 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.00426 * 180.25567 * 5 4 3 32 32 H 0.97000 * 119.99594 * 25.00426 * 9 7 6 33 33 H 0.97001 * 120.00098 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.46980 * 59.99436 * 20 7 6 35 35 H 1.09002 * 109.46655 * 300.00299 * 21 20 7 36 36 H 1.08997 * 109.47095 * 59.99987 * 21 20 7 37 37 H 1.08998 * 109.46630 * 180.02562 * 21 20 7 38 38 H 1.09005 * 109.47350 * 59.99730 * 22 20 7 39 39 H 1.08995 * 109.47058 * 179.97438 * 22 20 7 40 40 H 1.08997 * 109.47174 * 299.99761 * 22 20 7 41 41 H 1.07998 * 120.00145 * 180.02562 * 23 6 5 42 42 H 1.08000 * 119.99866 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7247 3.3753 -1.1972 6 6 2.9548 4.0271 0.0001 7 6 3.4571 5.4479 0.0001 8 1 3.9090 5.6735 0.9660 9 7 4.4576 5.6122 -1.0574 10 6 5.3925 6.5778 -0.9565 11 8 5.4052 7.3134 0.0128 12 6 6.3918 6.7422 -2.0134 13 1 6.4419 6.0310 -2.8245 14 6 7.2828 7.8219 -1.9726 15 7 7.3033 8.6132 -0.9330 16 14 8.4420 8.1308 -3.4045 17 1 7.8355 9.1238 -4.3270 18 1 9.7332 8.6554 -2.8918 19 1 8.6789 6.8585 -4.1328 20 6 2.2879 6.4022 -0.2513 21 6 2.7978 7.8448 -0.2507 22 6 1.6536 6.0856 -1.6072 23 6 2.7237 3.3757 1.1972 24 6 2.2629 2.0724 1.1971 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 2.0927 1.5599 -2.1324 31 1 2.9049 3.8844 -2.1325 32 1 4.4472 5.0260 -1.8302 33 1 7.9203 9.3612 -0.9049 34 1 1.5435 6.2800 0.5354 35 1 3.2494 8.0700 0.7155 36 1 3.5424 7.9673 -1.0372 37 1 1.9647 8.5246 -0.4294 38 1 1.2903 5.0579 -1.6072 39 1 0.8205 6.7652 -1.7861 40 1 2.3980 6.2078 -2.3939 41 1 2.9031 3.8849 2.1325 42 1 2.0826 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121547590.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:31 Heat of formation + Delta-G solvation = -54.961769 kcal Electronic energy + Delta-G solvation = -21540.661284 eV Core-core repulsion = 18483.804194 eV Total energy + Delta-G solvation = -3056.857090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07964 -39.41400 -37.13147 -34.71685 -34.48185 -33.34463 -31.86016 -30.65728 -28.55001 -27.86340 -26.63152 -23.96272 -23.62469 -22.05416 -21.53776 -20.18733 -19.31135 -17.52521 -17.31047 -16.60424 -16.23617 -16.00002 -15.80412 -15.57726 -14.76472 -14.55293 -14.51311 -14.18471 -14.14597 -14.06349 -13.74264 -13.31923 -13.04851 -12.90004 -12.77107 -12.71300 -12.54920 -12.46067 -12.13032 -12.01025 -11.99386 -11.80971 -11.62251 -11.57460 -11.36961 -10.88885 -9.75565 -9.74340 -9.40372 -9.25143 -8.24584 -6.78838 0.44151 0.54312 1.39774 1.40507 1.55537 2.25723 2.54077 2.84085 3.22889 3.67218 3.74986 3.95039 3.98698 4.09634 4.18668 4.21813 4.32673 4.41778 4.57225 4.62958 4.68332 4.76232 4.79332 4.81515 4.91617 5.06344 5.09086 5.10507 5.14065 5.19496 5.22865 5.26869 5.35630 5.44312 5.45633 5.55813 5.63549 5.74521 5.76942 5.95661 6.15650 6.28467 6.39300 6.92433 7.62842 8.57101 8.75267 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.004383 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.255623 B = 6386.703540 C = 6821.090307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.089 4.089 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.094 4.094 7 C 0.199 3.801 8 H 0.044 0.956 9 N -0.743 5.743 10 C 0.548 3.452 11 O -0.615 6.615 12 C -0.577 4.577 13 H 0.080 0.920 14 C 0.034 3.966 15 N -0.819 5.819 16 Si 0.990 3.010 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.251 1.251 20 C -0.092 4.092 21 C -0.121 4.121 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.119 4.119 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.142 0.858 31 H 0.124 0.876 32 H 0.389 0.611 33 H 0.272 0.728 34 H 0.077 0.923 35 H 0.028 0.972 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.119 0.881 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.965 -15.327 -1.620 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.137 4.137 5 C -0.131 4.131 6 C -0.094 4.094 7 C 0.093 3.907 8 H 0.062 0.938 9 N -0.397 5.397 10 C 0.351 3.649 11 O -0.501 6.501 12 C -0.614 4.614 13 H 0.098 0.902 14 C -0.181 4.181 15 N -0.448 5.448 16 Si 0.810 3.190 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.174 1.174 20 C -0.112 4.112 21 C -0.179 4.179 22 C -0.194 4.194 23 C -0.142 4.142 24 C -0.137 4.137 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.160 0.840 31 H 0.142 0.858 32 H 0.223 0.777 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.137 0.863 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.889 -14.651 -0.811 19.530 hybrid contribution 0.870 0.596 -0.514 1.173 sum -12.019 -14.055 -1.324 18.541 Atomic orbital electron populations 1.21730 0.94105 1.02378 1.01900 1.20574 0.96587 0.91059 1.03649 1.20198 0.98569 0.97360 0.92740 1.21237 0.99697 0.94031 0.98711 1.21072 0.99393 0.95325 0.97277 1.19931 1.00185 0.94687 0.94641 1.19446 0.88473 0.91064 0.91677 0.93762 1.45905 1.32348 1.37574 1.23870 1.18338 0.80833 0.78976 0.86708 1.90568 1.76570 1.47621 1.35343 1.21396 1.17261 1.12851 1.09914 0.90205 1.26821 0.98193 0.94326 0.98803 1.70180 1.32270 1.13083 1.29279 0.85119 0.76830 0.79571 0.77463 1.18932 1.19917 1.17431 1.21401 0.96378 0.94171 0.99215 1.21661 0.99037 0.96345 1.00830 1.21849 0.99839 1.02053 0.95670 1.21129 1.00159 0.95690 0.97216 1.21184 0.99739 0.93975 0.98765 0.92882 0.93011 0.91042 0.90303 0.90158 0.84041 0.85779 0.77711 0.91833 0.90477 0.95308 0.94873 0.92923 0.90963 0.92203 0.93640 0.86333 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 71.98 0.71 -1.15 16 2 C -0.08 -1.20 6.07 29.85 0.18 -1.02 16 3 C -0.09 -1.86 5.13 -19.87 -0.10 -1.96 16 4 C -0.12 -2.67 9.70 22.27 0.22 -2.46 16 5 C -0.11 -3.09 6.84 22.27 0.15 -2.93 16 6 C -0.09 -2.99 4.71 -19.87 -0.09 -3.08 16 7 C 0.20 7.92 2.28 44.24 0.10 8.02 16 8 H 0.04 2.07 7.44 -2.39 -0.02 2.06 16 9 N -0.74 -33.49 4.15 -450.39 -1.87 -35.36 16 10 C 0.55 31.32 6.10 86.36 0.53 31.85 16 11 O -0.61 -39.86 12.16 -4.32 -0.05 -39.91 16 12 C -0.58 -32.91 9.53 24.83 0.24 -32.68 16 13 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 14 C 0.03 1.89 5.49 85.30 0.47 2.36 16 15 N -0.82 -50.18 11.85 21.83 0.26 -49.93 16 16 Si 0.99 41.62 29.56 68.60 2.03 43.65 16 17 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 19 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 20 C -0.09 -3.33 2.79 -10.79 -0.03 -3.36 16 21 C -0.12 -5.30 7.72 71.98 0.56 -4.74 16 22 C -0.14 -4.18 7.95 71.98 0.57 -3.61 16 23 C -0.12 -3.53 9.67 22.27 0.22 -3.32 16 24 C -0.12 -2.74 9.70 22.27 0.22 -2.53 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 29 H 0.08 1.04 8.08 -2.38 -0.02 1.02 16 30 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.12 3.33 6.09 -2.91 -0.02 3.31 16 32 H 0.39 15.65 6.85 -92.71 -0.64 15.01 16 33 H 0.27 15.19 8.29 -92.71 -0.77 14.42 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.03 1.38 7.53 -2.39 -0.02 1.36 16 36 H 0.03 1.69 5.77 -2.39 -0.01 1.68 16 37 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 1.94 5.60 -2.38 -0.01 1.92 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 1.51 7.60 -2.39 -0.02 1.50 16 41 H 0.12 3.32 8.04 -2.91 -0.02 3.30 16 42 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -72.59 334.81 4.67 -67.92 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 0.37 Total: 34.23 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 3.93 Total: -20.60 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.61 Total: -85.29 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.05 Total: -39.91 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -72.59 4.67 -67.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121547590.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.959 kcal (2) G-P(sol) polarization free energy of solvation -72.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds