Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46855 * 2 1 4 4 C 1.53001 * 109.47271 * 240.00186 * 2 1 3 5 5 C 1.50702 * 109.47118 * 294.99881 * 4 2 1 6 6 C 1.38353 * 119.85030 * 269.72627 * 5 4 2 7 7 C 1.37962 * 120.14158 * 179.72236 * 6 5 4 8 8 C 1.39575 * 119.85319 * 0.55362 * 7 6 5 9 9 C 1.47843 * 120.14781 * 179.70271 * 8 7 6 10 10 O 1.21557 * 120.00227 * 148.12344 * 9 8 7 11 11 N 1.34776 * 119.99831 * 328.12909 * 9 8 7 12 12 C 1.46497 * 120.00237 * 4.29376 * 11 9 8 13 13 C 1.46503 * 119.99796 * 184.29503 * 11 9 8 14 14 C 1.50700 * 109.47039 * 90.00071 * 13 11 9 15 15 H 1.08004 * 119.99956 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99868 * 180.02562 * 14 13 11 17 17 N 1.31513 * 120.00248 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99833 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47089 * 59.99808 * 18 16 14 20 20 H 1.48503 * 109.47272 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47477 * 299.99922 * 18 16 14 22 22 C 1.39580 * 119.70923 * 359.71699 * 8 7 6 23 23 C 1.37953 * 119.85420 * 0.02562 * 22 8 7 24 24 H 1.09005 * 109.46890 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47466 * 300.00303 * 1 2 3 26 26 H 1.09001 * 109.46877 * 60.00289 * 1 2 3 27 27 H 1.09000 * 109.47389 * 119.99827 * 2 1 3 28 28 H 1.08998 * 109.47255 * 60.00083 * 3 2 1 29 29 H 1.09006 * 109.46969 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47797 * 299.99748 * 3 2 1 31 31 H 1.08999 * 109.47188 * 55.00196 * 4 2 1 32 32 H 1.09002 * 109.46918 * 174.99924 * 4 2 1 33 33 H 1.08009 * 119.93280 * 0.02562 * 6 5 4 34 34 H 1.08005 * 120.07501 * 180.25511 * 7 6 5 35 35 H 1.08995 * 109.47126 * 94.48707 * 12 11 9 36 36 H 1.09004 * 109.47237 * 214.49228 * 12 11 9 37 37 H 1.09002 * 109.46941 * 334.48546 * 12 11 9 38 38 H 1.09004 * 109.46794 * 209.99448 * 13 11 9 39 39 H 1.09000 * 109.47123 * 329.99470 * 13 11 9 40 40 H 0.96994 * 120.00056 * 179.97438 * 17 16 14 41 41 H 1.08005 * 120.07272 * 179.97438 * 22 8 7 42 42 H 1.08004 * 119.93230 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 -2.1733 -1.1889 6 6 2.4871 -3.0957 -0.5989 7 6 2.1257 -4.4256 -0.5353 8 6 0.9089 -4.8416 -1.0781 9 6 0.5181 -6.2662 -1.0194 10 8 -0.6551 -6.5713 -0.9286 11 7 1.4625 -7.2265 -1.0665 12 6 2.8806 -6.8593 -1.0808 13 6 1.0708 -8.6378 -1.1033 14 6 0.9108 -9.0775 -2.5358 15 1 1.0831 -8.3757 -3.3385 16 6 0.5433 -10.3753 -2.8216 17 7 0.3330 -11.2296 -1.8442 18 14 0.3442 -10.9201 -4.5973 19 1 1.6319 -10.7451 -5.3161 20 1 -0.0526 -12.3506 -4.6347 21 1 -0.7042 -10.0978 -5.2529 22 6 0.0629 -3.9067 -1.6770 23 6 0.4340 -2.5790 -1.7292 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6055 -0.2617 -2.1370 32 1 3.1264 -0.6442 -1.2951 33 1 3.4302 -2.7731 -0.1828 34 1 2.7849 -5.1440 -0.0708 35 1 3.2710 -6.8779 -0.0634 36 1 3.4337 -7.5697 -1.6954 37 1 2.9922 -5.8571 -1.4947 38 1 1.8406 -9.2411 -0.6219 39 1 0.1257 -8.7664 -0.5759 40 1 0.0742 -12.1425 -2.0452 41 1 -0.8797 -4.2222 -2.0993 42 1 -0.2195 -1.8547 -2.1926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121818672.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = -15.234621 kcal Electronic energy + Delta-G solvation = -20876.558989 eV Core-core repulsion = 17821.424598 eV Total energy + Delta-G solvation = -3055.134391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04995 -38.36445 -36.14457 -34.94705 -32.75485 -31.48048 -30.93644 -28.00794 -27.39342 -26.85008 -25.79527 -23.33838 -22.41489 -21.62714 -20.14382 -19.10828 -16.68936 -16.51717 -16.19392 -15.49998 -15.18127 -14.67143 -14.54182 -14.46578 -14.08966 -13.98590 -13.48574 -13.26672 -12.60356 -12.59389 -12.43128 -12.33667 -12.16532 -11.97091 -11.87058 -11.49940 -11.19715 -11.11228 -10.95053 -10.90138 -10.84330 -10.63200 -10.50417 -10.15948 -9.65643 -9.01238 -8.80098 -8.50443 -8.42395 -7.65055 -6.04098 -4.09247 1.13929 1.48113 3.32348 3.34838 3.36731 3.41201 3.86791 4.15897 4.44992 4.55607 4.61391 4.73443 4.91216 5.02958 5.05951 5.13770 5.29368 5.31386 5.39472 5.41216 5.48454 5.58351 5.64279 5.66319 5.68465 5.80172 5.84676 5.86426 6.03741 6.08671 6.08957 6.13822 6.23394 6.40788 6.57007 6.61443 6.99172 7.09297 7.44486 7.52691 7.92209 8.22939 8.39104 8.88941 9.06879 9.55781 11.03993 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037104 B = 0.003443 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.456184 B = 8131.582122 C = 8253.673058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.077 4.077 5 C -0.069 4.069 6 C -0.130 4.130 7 C -0.101 4.101 8 C -0.120 4.120 9 C 0.544 3.456 10 O -0.539 6.539 11 N -0.594 5.594 12 C 0.066 3.934 13 C 0.244 3.756 14 C -0.529 4.529 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.065 4.065 23 C -0.126 4.126 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.143 0.857 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.046 0.954 40 H 0.264 0.736 41 H 0.130 0.870 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 22.361 3.105 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.114 4.114 5 C -0.069 4.069 6 C -0.148 4.148 7 C -0.119 4.119 8 C -0.124 4.124 9 C 0.331 3.669 10 O -0.418 6.418 11 N -0.324 5.324 12 C -0.078 4.078 13 C 0.125 3.875 14 C -0.568 4.568 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.084 4.084 23 C -0.144 4.144 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.148 0.852 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.970 21.949 3.195 22.969 hybrid contribution -0.030 -0.483 -1.018 1.127 sum 5.940 21.466 2.177 22.379 Atomic orbital electron populations 1.21939 0.95074 1.02526 1.01432 1.21083 0.96254 0.95689 0.97965 1.21853 1.00867 0.95965 1.01763 1.20708 1.01088 0.91198 0.98425 1.19959 0.94427 0.95317 0.97238 1.20936 0.99952 0.92674 1.01225 1.21939 0.95441 0.96355 0.98196 1.20241 0.95716 0.94638 1.01766 1.18234 0.85917 0.84738 0.77976 1.90742 1.17761 1.82990 1.50262 1.48055 1.05036 1.08920 1.70437 1.22268 0.83254 1.01749 1.00482 1.19331 0.97132 0.73403 0.97595 1.21404 1.47231 0.95936 0.92193 0.92469 1.24937 0.95074 0.96436 0.97622 1.69922 1.46934 1.05040 1.31457 0.86544 0.78610 0.77512 0.84674 1.20222 1.21131 1.20142 1.21238 0.98820 0.92118 0.96247 1.20949 0.96587 0.95508 1.01336 0.91830 0.92937 0.92798 0.91031 0.92691 0.92729 0.92704 0.90994 0.90979 0.85935 0.83979 0.93300 0.91024 0.90560 0.94827 0.93578 0.92619 0.85165 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.76 37.16 0.33 -0.94 16 2 C -0.09 -0.71 2.91 -90.62 -0.26 -0.98 16 3 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 4 C -0.08 -0.64 4.84 -27.88 -0.13 -0.77 16 5 C -0.07 -0.76 4.72 -104.53 -0.49 -1.26 16 6 C -0.13 -1.48 9.68 -39.64 -0.38 -1.87 16 7 C -0.10 -1.40 7.44 -39.18 -0.29 -1.69 16 8 C -0.12 -2.09 5.47 -104.97 -0.57 -2.67 16 9 C 0.54 12.19 7.44 -12.33 -0.09 12.10 16 10 O -0.54 -14.33 16.31 5.32 0.09 -14.25 16 11 N -0.59 -13.18 2.86 -184.08 -0.53 -13.71 16 12 C 0.07 1.09 8.80 59.85 0.53 1.62 16 13 C 0.24 6.56 5.21 -5.19 -0.03 6.54 16 14 C -0.53 -15.30 9.39 -34.44 -0.32 -15.63 16 15 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.89 13.29 55.43 0.74 -26.16 16 18 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 C -0.07 -1.03 9.60 -39.19 -0.38 -1.40 16 23 C -0.13 -1.55 7.93 -39.64 -0.31 -1.86 16 24 H 0.06 0.62 6.26 -51.93 -0.33 0.30 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.14 1.78 4.80 -52.48 -0.25 1.53 16 35 H 0.05 0.68 7.44 -51.93 -0.39 0.29 16 36 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 37 H 0.08 1.10 4.72 -51.93 -0.25 0.85 16 38 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 39 H 0.05 1.39 7.37 -51.93 -0.38 1.01 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.13 2.12 7.95 -52.48 -0.42 1.70 16 42 H 0.12 1.25 8.03 -52.48 -0.42 0.83 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -33.38 342.10 -8.36 -41.74 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.61 Total: -2.13 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.18 Total: -7.72 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.21 Total: -39.87 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.09 Total: -14.25 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.38 -8.36 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121818672.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.502 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds