Wall clock time and date at job start Mon Mar 30 2020 01:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 110.01524 * 2 1 4 4 C 1.54265 * 110.03282 * 238.55821 * 2 1 3 5 5 C 1.55024 * 104.27987 * 264.22878 * 4 2 1 6 6 C 1.54886 * 102.68564 * 322.23800 * 5 4 2 7 7 H 1.08996 * 110.48474 * 279.02126 * 6 5 4 8 8 N 1.46504 * 110.48607 * 156.51751 * 6 5 4 9 9 C 1.39675 * 120.00000 * 87.96682 * 8 6 5 10 10 C 1.38997 * 120.04166 * 359.97438 * 9 8 6 11 11 C 1.38147 * 120.06426 * 179.74011 * 10 9 8 12 12 C 1.38173 * 120.14025 * 0.51846 * 11 10 9 13 13 C 1.38915 * 120.08019 * 359.76675 * 12 11 10 14 14 O 1.35747 * 120.03635 * 179.97438 * 13 12 11 15 15 C 1.34825 * 117.00540 * 174.47572 * 14 13 12 16 16 H 1.08006 * 120.00045 * 5.06165 * 15 14 13 17 17 C 1.38654 * 120.00547 * 185.05357 * 15 14 13 18 18 N 1.31557 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00419 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46872 * 60.00244 * 19 17 15 21 21 H 1.48494 * 109.47449 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46955 * 300.00546 * 19 17 15 23 23 C 1.38747 * 120.03586 * 180.27688 * 9 8 6 24 24 C 1.53868 * 110.03094 * 121.39037 * 2 1 3 25 25 H 1.08999 * 109.47288 * 298.60792 * 1 2 3 26 26 H 1.09003 * 109.47060 * 58.60764 * 1 2 3 27 27 H 1.09000 * 109.46788 * 178.60642 * 1 2 3 28 28 H 1.09000 * 109.47392 * 181.38919 * 3 2 1 29 29 H 1.08998 * 109.47551 * 301.39140 * 3 2 1 30 30 H 1.09004 * 109.47283 * 61.39253 * 3 2 1 31 31 H 1.08997 * 110.48728 * 23.00997 * 4 2 1 32 32 H 1.09005 * 110.48275 * 145.51211 * 4 2 1 33 33 H 1.08997 * 110.87593 * 203.90008 * 5 4 2 34 34 H 1.09006 * 110.69432 * 80.48720 * 5 4 2 35 35 H 0.96998 * 119.99720 * 268.24055 * 8 6 5 36 36 H 1.08002 * 119.96945 * 359.97438 * 10 9 8 37 37 H 1.08002 * 119.93440 * 180.27834 * 11 10 9 38 38 H 1.08000 * 119.96325 * 179.73605 * 12 11 10 39 39 H 0.96998 * 119.99908 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.07478 * 0.02562 * 23 9 8 41 41 H 1.09002 * 110.03414 * 0.02562 * 24 2 1 42 42 H 1.09009 * 110.07336 * 238.59388 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7560 -1.2365 5 6 2.3314 -2.1917 -0.7192 6 6 2.8875 -1.9402 0.7044 7 1 3.9443 -1.6771 0.6601 8 7 2.6895 -3.1214 1.5482 9 6 3.6534 -4.1319 1.5723 10 6 4.8006 -4.0181 0.7957 11 6 5.7568 -5.0148 0.8233 12 6 5.5713 -6.1325 1.6142 13 6 4.4243 -6.2551 2.3882 14 8 4.2427 -7.3538 3.1646 15 6 3.1664 -7.3586 3.9766 16 1 2.4511 -6.5507 3.9299 17 6 2.9775 -8.4008 4.8714 18 7 3.8489 -9.3847 4.9285 19 14 1.4859 -8.4077 5.9959 20 1 0.2479 -8.4103 5.1758 21 1 1.5163 -9.6214 6.8510 22 1 1.5081 -7.1966 6.8550 23 6 3.4640 -5.2535 2.3668 24 6 2.0571 -0.7530 1.2340 25 1 -0.3634 0.4920 0.9022 26 1 -0.3633 0.5353 -0.8773 27 1 -0.3633 -1.0274 -0.0250 28 1 3.1434 1.4274 -0.0249 29 1 1.6751 1.9623 -0.8772 30 1 1.7157 1.9474 0.9022 31 1 1.3062 -0.7704 -2.0251 32 1 2.9799 -0.2992 -1.5979 33 1 3.0729 -2.6940 -1.3404 34 1 1.4071 -2.7680 -0.6766 35 1 1.8872 -3.2035 2.0871 36 1 4.9463 -3.1478 0.1730 37 1 6.6494 -4.9221 0.2225 38 1 6.3187 -6.9119 1.6304 39 1 3.7170 -10.1136 5.5547 40 1 2.5711 -5.3470 2.9672 41 1 1.2229 -1.1188 1.8327 42 1 2.6865 -0.0949 1.8333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129390089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:10 Heat of formation + Delta-G solvation = -38.241280 kcal Electronic energy + Delta-G solvation = -20959.302962 eV Core-core repulsion = 17903.170927 eV Total energy + Delta-G solvation = -3056.132035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.92340 -40.11238 -38.35297 -35.72661 -34.20045 -32.40550 -30.62877 -30.11670 -28.42968 -28.10533 -27.19385 -25.10900 -23.38253 -22.69639 -21.27621 -19.72381 -19.61220 -19.03442 -17.22028 -16.96727 -16.52495 -16.16563 -15.77019 -15.50811 -15.41350 -14.98718 -14.56689 -14.50102 -14.33415 -14.05857 -13.80571 -13.59114 -13.49819 -12.95599 -12.83218 -12.59207 -12.44659 -12.34740 -12.18350 -12.11592 -12.03478 -11.74129 -11.40446 -11.38249 -11.31040 -11.24864 -10.89111 -10.56324 -9.09919 -8.45068 -8.20504 -6.13542 0.77353 0.93140 1.33703 1.45651 1.50445 2.18787 2.56059 2.89618 3.26835 3.59489 3.61132 3.69792 3.87876 4.20130 4.30499 4.37676 4.39269 4.48563 4.51720 4.58892 4.63640 4.65218 4.75831 4.85802 4.89895 4.97149 5.01052 5.06603 5.13023 5.15641 5.16530 5.20065 5.24022 5.35280 5.42710 5.45382 5.51319 5.58708 5.76431 5.81615 6.05732 6.13320 6.64337 6.88979 7.00158 7.83749 8.78506 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021861 B = 0.003958 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.503929 B = 7072.813997 C = 8078.071023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.108 4.108 5 C -0.137 4.137 6 C 0.148 3.852 7 H 0.084 0.916 8 N -0.738 5.738 9 C 0.258 3.742 10 C -0.264 4.264 11 C -0.026 4.026 12 C -0.263 4.263 13 C 0.153 3.847 14 O -0.233 6.233 15 C -0.412 4.412 16 H 0.098 0.902 17 C -0.024 4.024 18 N -0.923 5.923 19 Si 1.018 2.982 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.258 1.258 23 C -0.319 4.319 24 C -0.119 4.119 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.397 0.603 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.272 0.728 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.756 21.770 -10.704 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.195 4.195 4 C -0.146 4.146 5 C -0.176 4.176 6 C 0.043 3.957 7 H 0.102 0.898 8 N -0.366 5.366 9 C 0.154 3.846 10 C -0.287 4.287 11 C -0.045 4.045 12 C -0.284 4.284 13 C 0.102 3.898 14 O -0.139 6.139 15 C -0.488 4.488 16 H 0.116 0.884 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.837 3.163 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.183 1.183 23 C -0.343 4.343 24 C -0.157 4.157 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.232 0.768 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.538 21.546 -10.688 24.680 hybrid contribution -0.787 -0.790 0.966 1.475 sum -6.325 20.756 -9.722 23.777 Atomic orbital electron populations 1.21912 0.94030 1.01467 1.02128 1.21099 0.95788 0.95619 0.93991 1.21909 1.01027 0.94415 1.02133 1.22457 1.01561 0.93688 0.96920 1.22961 1.00749 0.97700 0.96228 1.21881 1.00057 0.84183 0.89617 0.89799 1.44825 1.21887 1.19473 1.50453 1.17561 0.89175 0.86706 0.91156 1.20555 0.96166 1.03183 1.08751 1.20826 0.98318 0.90788 0.94544 1.20255 0.98380 1.02902 1.06886 1.19638 0.93895 0.86160 0.90135 1.83942 1.45628 1.35263 1.49066 1.21753 1.00799 1.09940 1.16347 0.88432 1.26587 1.02485 0.94182 0.98830 1.70185 1.37601 1.10944 1.37374 0.84662 0.75798 0.78685 0.77126 1.18206 1.19484 1.18250 1.20520 1.03510 0.98208 1.12018 1.22529 0.99418 0.95818 0.97927 0.92469 0.91815 0.93394 0.92321 0.91876 0.92503 0.90878 0.90485 0.91769 0.92356 0.76833 0.84188 0.83071 0.87612 0.91875 0.86986 0.91428 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.14 71.98 0.59 -1.26 16 2 C -0.06 -0.89 0.94 -51.46 -0.05 -0.94 16 3 C -0.14 -1.58 8.16 71.98 0.59 -0.99 16 4 C -0.11 -1.57 5.90 31.72 0.19 -1.38 16 5 C -0.14 -2.70 6.59 31.93 0.21 -2.49 16 6 C 0.15 3.14 2.85 46.06 0.13 3.27 16 7 H 0.08 1.80 6.52 -2.39 -0.02 1.78 16 8 N -0.74 -20.87 5.35 -313.96 -1.68 -22.55 16 9 C 0.26 9.48 6.65 38.20 0.25 9.73 16 10 C -0.26 -8.78 9.22 22.43 0.21 -8.57 16 11 C -0.03 -0.93 10.03 22.23 0.22 -0.70 16 12 C -0.26 -11.96 9.99 22.42 0.22 -11.74 16 13 C 0.15 8.06 6.64 22.56 0.15 8.21 16 14 O -0.23 -14.64 9.76 -22.66 -0.22 -14.86 16 15 C -0.41 -24.91 9.49 67.92 0.64 -24.27 16 16 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 17 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 18 N -0.92 -58.15 13.67 21.61 0.30 -57.85 16 19 Si 1.02 43.96 29.55 68.60 2.03 45.99 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 C -0.32 -14.70 9.01 22.52 0.20 -14.49 16 24 C -0.12 -2.03 5.84 31.32 0.18 -1.85 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.66 8.12 -2.39 -0.02 0.64 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.98 7.84 -2.39 -0.02 0.96 16 32 H 0.08 0.99 7.84 -2.38 -0.02 0.97 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.40 10.75 8.36 -92.71 -0.77 9.98 16 36 H 0.14 3.70 6.25 -2.91 -0.02 3.68 16 37 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.11 5.29 5.64 -2.91 -0.02 5.27 16 41 H 0.07 1.20 7.25 -2.39 -0.02 1.18 16 42 H 0.07 1.22 7.68 -2.38 -0.02 1.21 16 Total: -1.00 -71.70 336.70 4.87 -66.83 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.24 Total: 30.83 kcal Atomic # 6 Polarization: -52.61 SS G_CDS: 4.21 Total: -48.40 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.38 Total: -80.40 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -71.70 4.87 -66.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129390089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.593 kcal (2) G-P(sol) polarization free energy of solvation -71.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds