Wall clock time and date at job start Mon Mar 30 2020 01:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 110.05317 * 2 1 4 4 C 1.54262 * 110.02980 * 121.41498 * 2 1 3 5 5 C 1.54892 * 104.19422 * 95.67573 * 4 2 1 6 6 C 1.54887 * 102.74742 * 37.94301 * 5 4 2 7 7 H 1.08995 * 110.48896 * 80.73490 * 6 5 4 8 8 N 1.46508 * 110.48530 * 203.37897 * 6 5 4 9 9 C 1.39671 * 119.99747 * 273.54500 * 8 6 5 10 10 C 1.38999 * 120.04324 * 0.02562 * 9 8 6 11 11 C 1.38151 * 120.06532 * 180.02562 * 10 9 8 12 12 C 1.38165 * 120.14036 * 359.97327 * 11 10 9 13 13 C 1.38925 * 120.08193 * 0.04588 * 12 11 10 14 14 O 1.35749 * 120.02992 * 179.97438 * 13 12 11 15 15 C 1.34836 * 116.99619 * 174.48754 * 14 13 12 16 16 H 1.08001 * 119.99953 * 5.07680 * 15 14 13 17 17 C 1.38650 * 120.00102 * 185.08148 * 15 14 13 18 18 N 1.31562 * 119.99906 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00142 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47650 * 59.99724 * 19 17 15 21 21 H 1.48501 * 109.47421 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47267 * 299.99661 * 19 17 15 23 23 C 1.38751 * 120.03530 * 179.72263 * 9 8 6 24 24 C 1.53874 * 110.03275 * 238.58230 * 2 1 3 25 25 H 1.09004 * 109.47361 * 300.04042 * 1 2 3 26 26 H 1.09008 * 109.46748 * 60.03689 * 1 2 3 27 27 H 1.08997 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46952 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47357 * 299.95707 * 3 2 1 30 30 H 1.08996 * 109.47440 * 59.96131 * 3 2 1 31 31 H 1.08997 * 110.48806 * 336.99736 * 4 2 1 32 32 H 1.09004 * 110.59831 * 214.40642 * 4 2 1 33 33 H 1.09002 * 110.75596 * 156.25310 * 5 4 2 34 34 H 1.08995 * 110.75509 * 279.62625 * 5 4 2 35 35 H 0.97000 * 119.99648 * 93.54117 * 8 6 5 36 36 H 1.08004 * 119.97159 * 0.02562 * 10 9 8 37 37 H 1.07995 * 119.93145 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.96380 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00225 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.07611 * 359.97438 * 23 9 8 41 41 H 1.09003 * 110.02962 * 0.02562 * 24 2 1 42 42 H 1.09005 * 110.03129 * 121.42802 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 2.3280 -2.1901 0.7191 6 6 2.8875 -1.9406 -0.7034 7 1 3.9439 -1.6766 -0.6570 8 7 2.6895 -3.1221 -1.5468 9 6 3.6366 -4.1486 -1.5442 10 6 4.7671 -4.0504 -0.7414 11 6 5.7045 -5.0652 -0.7388 12 6 5.5214 -6.1807 -1.5332 13 6 4.3940 -6.2850 -2.3382 14 8 4.2154 -7.3812 -3.1186 15 6 3.0482 -7.4729 -3.7874 16 1 2.3410 -6.6574 -3.7536 17 6 2.7558 -8.6142 -4.5184 18 7 3.6175 -9.6075 -4.5599 19 14 1.1392 -8.7409 -5.4455 20 1 1.0531 -7.6442 -6.4430 21 1 1.0691 -10.0507 -6.1419 22 1 0.0094 -8.6290 -4.4882 23 6 3.4470 -5.2706 -2.3382 24 6 2.0571 -0.7536 -1.2337 25 1 -0.3634 0.5145 0.8896 26 1 -0.3633 0.5133 -0.8904 27 1 -0.3633 -1.0276 0.0005 28 1 3.1447 1.4261 0.0005 29 1 1.6972 1.9545 -0.8903 30 1 1.6960 1.9550 0.8896 31 1 1.3061 -0.7695 2.0254 32 1 2.9807 -0.3009 1.5988 33 1 3.0675 -2.6931 1.3423 34 1 1.4031 -2.7651 0.6751 35 1 1.9006 -3.1915 -2.1069 36 1 4.9128 -3.1799 -0.1190 37 1 6.5822 -4.9864 -0.1145 38 1 6.2559 -6.9726 -1.5287 39 1 3.4132 -10.4058 -5.0716 40 1 2.5670 -5.3519 -2.9589 41 1 1.2229 -1.1189 -1.8326 42 1 2.6867 -0.0953 -1.8325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129390309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:14 Heat of formation + Delta-G solvation = -20.515152 kcal Electronic energy + Delta-G solvation = -20965.665134 eV Core-core repulsion = 17910.301762 eV Total energy + Delta-G solvation = -3055.363372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.65847 -38.70693 -36.71133 -34.38877 -32.16509 -31.34501 -29.31811 -28.62746 -27.55961 -27.11085 -25.19087 -24.22723 -21.73136 -21.31006 -19.96927 -18.92956 -17.80709 -17.38113 -15.74015 -15.67926 -15.09745 -14.76241 -14.31407 -14.10458 -13.93702 -13.66664 -13.61009 -13.41177 -13.05306 -12.81221 -12.46029 -12.30987 -12.10993 -11.77885 -11.59925 -11.49696 -11.18587 -11.04194 -10.84028 -10.73337 -10.69923 -10.67051 -10.56224 -10.45490 -10.31890 -9.34165 -9.30483 -8.71452 -7.30184 -6.70217 -6.37245 -3.96485 2.43646 2.62633 3.16297 3.18163 3.20194 3.80488 4.02785 4.37455 4.46940 4.61932 4.76164 5.06079 5.16355 5.20799 5.23943 5.28847 5.33683 5.42099 5.43869 5.49145 5.57138 5.70695 5.74946 5.76778 5.80631 5.86071 5.98516 6.02860 6.05381 6.17903 6.22790 6.27442 6.33932 6.44196 6.71325 6.73543 7.10518 7.19834 7.44565 7.54441 7.73554 8.09175 8.09929 8.27961 9.08871 9.82178 10.81227 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.003972 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.427298 B = 7046.891524 C = 8053.241518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.115 4.115 5 C -0.139 4.139 6 C 0.155 3.845 7 H 0.081 0.919 8 N -0.747 5.747 9 C 0.251 3.749 10 C -0.279 4.279 11 C -0.041 4.041 12 C -0.238 4.238 13 C 0.190 3.810 14 O -0.179 6.179 15 C -0.389 4.389 16 H 0.090 0.910 17 C 0.038 3.962 18 N -0.866 5.866 19 Si 0.939 3.061 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.271 1.271 23 C -0.303 4.303 24 C -0.122 4.122 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.393 0.607 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.269 0.731 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 18.698 8.902 21.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.153 4.153 5 C -0.178 4.178 6 C 0.048 3.952 7 H 0.099 0.901 8 N -0.377 5.377 9 C 0.149 3.851 10 C -0.302 4.302 11 C -0.060 4.060 12 C -0.258 4.258 13 C 0.135 3.865 14 O -0.082 6.082 15 C -0.465 4.465 16 H 0.107 0.893 17 C -0.165 4.165 18 N -0.501 5.501 19 Si 0.764 3.236 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.327 4.327 24 C -0.161 4.161 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.227 0.773 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.293 18.391 8.841 20.853 hybrid contribution -1.202 -0.065 -0.695 1.389 sum -5.495 18.327 8.147 20.795 Atomic orbital electron populations 1.21913 0.94360 1.01852 1.01429 1.21116 0.95540 0.95117 0.95063 1.21924 1.00915 0.95315 1.01497 1.22455 1.00757 0.95438 0.96628 1.22996 1.01551 0.96240 0.97020 1.21598 0.99272 0.84811 0.89493 0.90105 1.44642 1.24819 1.18843 1.49445 1.17474 0.88190 0.86875 0.92521 1.20092 0.98196 1.02346 1.09556 1.20374 0.96942 0.92457 0.96184 1.20030 1.00230 1.01234 1.04355 1.19071 0.92384 0.86704 0.88328 1.83987 1.37218 1.35673 1.51354 1.21248 0.94170 1.03389 1.27730 0.89281 1.25258 0.99241 0.94474 0.97575 1.70032 1.34884 1.05870 1.39326 0.85815 0.80471 0.77994 0.79317 1.19621 1.20327 1.19624 1.20507 1.04868 0.96690 1.10644 1.22536 0.99725 0.96606 0.97192 0.92805 0.92798 0.92460 0.92501 0.92789 0.92779 0.91679 0.91499 0.91278 0.91221 0.77281 0.87824 0.87297 0.86994 0.92101 0.85903 0.91206 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.14 37.16 0.30 -0.82 16 2 C -0.07 -0.58 0.94 -153.39 -0.14 -0.73 16 3 C -0.14 -1.04 8.16 37.16 0.30 -0.74 16 4 C -0.11 -1.03 5.90 -25.07 -0.15 -1.18 16 5 C -0.14 -1.57 6.58 -24.74 -0.16 -1.73 16 6 C 0.15 1.87 2.80 -66.27 -0.19 1.69 16 7 H 0.08 1.03 6.62 -51.93 -0.34 0.68 16 8 N -0.75 -11.28 5.36 -50.58 -0.27 -11.55 16 9 C 0.25 4.77 6.65 -83.81 -0.56 4.21 16 10 C -0.28 -5.07 9.22 -39.33 -0.36 -5.43 16 11 C -0.04 -0.77 10.03 -39.64 -0.40 -1.16 16 12 C -0.24 -5.30 9.99 -39.35 -0.39 -5.69 16 13 C 0.19 4.77 6.65 -39.13 -0.26 4.51 16 14 O -0.18 -5.28 9.76 0.04 0.00 -5.28 16 15 C -0.39 -11.15 9.49 30.88 0.29 -10.86 16 16 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.87 -25.93 13.67 55.48 0.76 -25.17 16 19 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.30 -6.84 9.01 -39.20 -0.35 -7.19 16 24 C -0.12 -1.22 5.84 -25.62 -0.15 -1.37 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16 32 H 0.07 0.57 7.86 -51.93 -0.41 0.16 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.39 5.58 8.34 -40.82 -0.34 5.24 16 36 H 0.10 1.63 6.28 -52.48 -0.33 1.30 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.12 2.78 5.63 -52.49 -0.30 2.49 16 41 H 0.07 0.70 7.24 -51.93 -0.38 0.32 16 42 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 LS Contribution 336.77 15.07 5.08 5.08 Total: -1.00 -30.92 336.77 -8.31 -39.22 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.53 Total: 7.30 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -2.31 Total: -25.50 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.49 Total: -36.72 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.00 Total: -5.28 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.92 -8.31 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129390309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.709 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds