Wall clock time and date at job start Mon Mar 30 2020 01:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 110.05317 * 2 1 4 4 C 1.54262 * 110.02980 * 121.41498 * 2 1 3 5 5 C 1.54892 * 104.19422 * 95.67573 * 4 2 1 6 6 C 1.54887 * 102.74742 * 37.94301 * 5 4 2 7 7 H 1.08995 * 110.48896 * 80.73490 * 6 5 4 8 8 N 1.46508 * 110.48530 * 203.37897 * 6 5 4 9 9 C 1.39671 * 119.99747 * 273.54500 * 8 6 5 10 10 C 1.38999 * 120.04324 * 0.02562 * 9 8 6 11 11 C 1.38151 * 120.06532 * 180.02562 * 10 9 8 12 12 C 1.38165 * 120.14036 * 359.97327 * 11 10 9 13 13 C 1.38925 * 120.08193 * 0.04588 * 12 11 10 14 14 O 1.35749 * 120.02992 * 179.97438 * 13 12 11 15 15 C 1.34836 * 116.99619 * 174.48754 * 14 13 12 16 16 H 1.08001 * 119.99953 * 5.07680 * 15 14 13 17 17 C 1.38650 * 120.00102 * 185.08148 * 15 14 13 18 18 N 1.31562 * 119.99906 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00142 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47650 * 59.99724 * 19 17 15 21 21 H 1.48501 * 109.47421 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47267 * 299.99661 * 19 17 15 23 23 C 1.38751 * 120.03530 * 179.72263 * 9 8 6 24 24 C 1.53874 * 110.03275 * 238.58230 * 2 1 3 25 25 H 1.09004 * 109.47361 * 300.04042 * 1 2 3 26 26 H 1.09008 * 109.46748 * 60.03689 * 1 2 3 27 27 H 1.08997 * 109.47193 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46952 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47357 * 299.95707 * 3 2 1 30 30 H 1.08996 * 109.47440 * 59.96131 * 3 2 1 31 31 H 1.08997 * 110.48806 * 336.99736 * 4 2 1 32 32 H 1.09004 * 110.59831 * 214.40642 * 4 2 1 33 33 H 1.09002 * 110.75596 * 156.25310 * 5 4 2 34 34 H 1.08995 * 110.75509 * 279.62625 * 5 4 2 35 35 H 0.97000 * 119.99648 * 93.54117 * 8 6 5 36 36 H 1.08004 * 119.97159 * 0.02562 * 10 9 8 37 37 H 1.07995 * 119.93145 * 179.97438 * 11 10 9 38 38 H 1.08003 * 119.96380 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00225 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.07611 * 359.97438 * 23 9 8 41 41 H 1.09003 * 110.02962 * 0.02562 * 24 2 1 42 42 H 1.09005 * 110.03129 * 121.42802 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 2.3280 -2.1901 0.7191 6 6 2.8875 -1.9406 -0.7034 7 1 3.9439 -1.6766 -0.6570 8 7 2.6895 -3.1221 -1.5468 9 6 3.6366 -4.1486 -1.5442 10 6 4.7671 -4.0504 -0.7414 11 6 5.7045 -5.0652 -0.7388 12 6 5.5214 -6.1807 -1.5332 13 6 4.3940 -6.2850 -2.3382 14 8 4.2154 -7.3812 -3.1186 15 6 3.0482 -7.4729 -3.7874 16 1 2.3410 -6.6574 -3.7536 17 6 2.7558 -8.6142 -4.5184 18 7 3.6175 -9.6075 -4.5599 19 14 1.1392 -8.7409 -5.4455 20 1 1.0531 -7.6442 -6.4430 21 1 1.0691 -10.0507 -6.1419 22 1 0.0094 -8.6290 -4.4882 23 6 3.4470 -5.2706 -2.3382 24 6 2.0571 -0.7536 -1.2337 25 1 -0.3634 0.5145 0.8896 26 1 -0.3633 0.5133 -0.8904 27 1 -0.3633 -1.0276 0.0005 28 1 3.1447 1.4261 0.0005 29 1 1.6972 1.9545 -0.8903 30 1 1.6960 1.9550 0.8896 31 1 1.3061 -0.7695 2.0254 32 1 2.9807 -0.3009 1.5988 33 1 3.0675 -2.6931 1.3423 34 1 1.4031 -2.7651 0.6751 35 1 1.9006 -3.1915 -2.1069 36 1 4.9128 -3.1799 -0.1190 37 1 6.5822 -4.9864 -0.1145 38 1 6.2559 -6.9726 -1.5287 39 1 3.4132 -10.4058 -5.0716 40 1 2.5670 -5.3519 -2.9589 41 1 1.2229 -1.1189 -1.8326 42 1 2.6867 -0.0953 -1.8325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129390309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:14 Heat of formation + Delta-G solvation = -38.312644 kcal Electronic energy + Delta-G solvation = -20966.436891 eV Core-core repulsion = 17910.301762 eV Total energy + Delta-G solvation = -3056.135129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.92544 -40.11743 -38.35167 -35.72549 -34.19975 -32.40605 -30.62665 -30.12837 -28.42777 -28.10642 -27.19275 -25.10720 -23.37401 -22.69539 -21.27608 -19.73001 -19.61446 -19.02666 -17.21679 -16.96870 -16.52717 -16.17192 -15.77092 -15.49480 -15.41738 -15.00565 -14.57628 -14.48724 -14.32413 -14.06979 -13.82531 -13.57830 -13.48610 -12.95032 -12.83471 -12.58460 -12.46508 -12.34826 -12.19303 -12.09332 -12.02532 -11.74651 -11.41048 -11.39034 -11.30714 -11.24588 -10.89026 -10.56332 -9.09850 -8.45059 -8.20525 -6.13588 0.77399 0.93203 1.33707 1.45635 1.50403 2.18771 2.56078 2.89631 3.26851 3.58421 3.61892 3.69862 3.88019 4.20354 4.30837 4.37914 4.38895 4.48511 4.51703 4.58867 4.63588 4.65379 4.75878 4.85816 4.89793 4.96979 5.01011 5.06785 5.12976 5.15673 5.16572 5.20187 5.23933 5.35459 5.42767 5.45283 5.51471 5.58764 5.76438 5.81634 6.05771 6.13350 6.64349 6.89033 7.00154 7.83693 8.78506 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.003972 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.427298 B = 7046.891524 C = 8053.241518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.109 4.109 5 C -0.138 4.138 6 C 0.148 3.852 7 H 0.084 0.916 8 N -0.738 5.738 9 C 0.258 3.742 10 C -0.264 4.264 11 C -0.026 4.026 12 C -0.263 4.263 13 C 0.153 3.847 14 O -0.233 6.233 15 C -0.412 4.412 16 H 0.098 0.902 17 C -0.024 4.024 18 N -0.923 5.923 19 Si 1.018 2.982 20 H -0.257 1.257 21 H -0.270 1.270 22 H -0.258 1.258 23 C -0.319 4.319 24 C -0.119 4.119 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.397 0.603 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.272 0.728 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 22.031 10.285 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.195 4.195 4 C -0.146 4.146 5 C -0.177 4.177 6 C 0.043 3.957 7 H 0.102 0.898 8 N -0.366 5.366 9 C 0.154 3.846 10 C -0.286 4.286 11 C -0.045 4.045 12 C -0.284 4.284 13 C 0.102 3.898 14 O -0.139 6.139 15 C -0.488 4.488 16 H 0.116 0.884 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.837 3.163 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.183 1.183 23 C -0.343 4.343 24 C -0.157 4.157 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.232 0.768 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.284 21.809 10.265 24.677 hybrid contribution -0.818 -0.824 -0.912 1.476 sum -6.103 20.985 9.354 23.772 Atomic orbital electron populations 1.21912 0.94039 1.01442 1.02146 1.21100 0.95777 0.95632 0.93981 1.21907 1.01017 0.94402 1.02147 1.22439 1.01574 0.93698 0.96929 1.22942 1.00735 0.97718 0.96272 1.21868 0.99994 0.84176 0.89651 0.89845 1.44825 1.23882 1.18618 1.49321 1.17559 0.89177 0.86560 0.91298 1.20553 0.96833 1.02896 1.08347 1.20824 0.98147 0.90722 0.94795 1.20256 0.99740 1.02902 1.05518 1.19640 0.94284 0.86689 0.89224 1.83947 1.38146 1.38146 1.53659 1.21754 0.94603 1.04234 1.28246 0.88427 1.26586 1.03509 0.93640 0.98352 1.70185 1.37666 1.06891 1.41365 0.84661 0.75113 0.78517 0.77978 1.18177 1.19485 1.18284 1.20520 1.04254 0.97708 1.11771 1.22527 0.99415 0.95795 0.97935 0.91832 0.92427 0.93431 0.92315 0.92482 0.91885 0.90906 0.90451 0.91802 0.92402 0.76822 0.84202 0.83079 0.87615 0.91875 0.86982 0.91408 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.14 71.98 0.59 -1.27 16 2 C -0.06 -0.89 0.94 -51.46 -0.05 -0.94 16 3 C -0.14 -1.57 8.16 71.98 0.59 -0.98 16 4 C -0.11 -1.58 5.90 31.67 0.19 -1.39 16 5 C -0.14 -2.72 6.58 31.89 0.21 -2.51 16 6 C 0.15 3.15 2.80 46.06 0.13 3.28 16 7 H 0.08 1.78 6.62 -2.39 -0.02 1.77 16 8 N -0.74 -20.87 5.36 -313.95 -1.68 -22.55 16 9 C 0.26 9.48 6.65 38.20 0.25 9.73 16 10 C -0.26 -8.78 9.22 22.43 0.21 -8.57 16 11 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 12 C -0.26 -11.96 9.99 22.42 0.22 -11.74 16 13 C 0.15 8.05 6.65 22.56 0.15 8.20 16 14 O -0.23 -14.64 9.76 -22.79 -0.22 -14.86 16 15 C -0.41 -24.91 9.49 67.92 0.64 -24.27 16 16 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 17 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 18 N -0.92 -58.15 13.67 21.61 0.30 -57.86 16 19 Si 1.02 43.97 29.55 68.60 2.03 46.00 16 20 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 23 C -0.32 -14.70 9.01 22.52 0.20 -14.49 16 24 C -0.12 -2.02 5.84 31.32 0.18 -1.83 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.98 7.84 -2.39 -0.02 0.96 16 32 H 0.08 1.00 7.86 -2.38 -0.02 0.98 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.40 10.75 8.34 -92.71 -0.77 9.98 16 36 H 0.14 3.70 6.28 -2.91 -0.02 3.68 16 37 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 40 H 0.11 5.29 5.63 -2.91 -0.02 5.27 16 41 H 0.07 1.20 7.24 -2.39 -0.02 1.18 16 42 H 0.07 1.22 7.67 -2.38 -0.02 1.20 16 Total: -1.00 -71.72 336.77 4.86 -66.86 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.24 Total: 30.83 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 4.20 Total: -48.41 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.39 Total: -80.41 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.22 Total: -14.86 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.72 4.86 -66.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129390309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.545 kcal (2) G-P(sol) polarization free energy of solvation -71.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds