Wall clock time and date at job start Mon Mar 30 2020 02:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47080 * 2 1 4 4 C 1.53000 * 109.47266 * 239.99645 * 2 1 3 5 5 C 1.50704 * 109.46912 * 119.99382 * 2 1 3 6 6 C 1.37973 * 120.07479 * 3.96966 * 5 2 1 7 7 C 1.38337 * 120.14618 * 179.97438 * 6 5 2 8 8 C 1.38383 * 120.29076 * 0.02562 * 7 6 5 9 9 C 1.37939 * 120.14388 * 359.74289 * 8 7 6 10 10 C 1.39559 * 120.06997 * 183.94209 * 5 2 1 11 11 C 1.47842 * 120.14562 * 0.02562 * 10 5 2 12 12 O 1.21552 * 120.00416 * 353.48369 * 11 10 5 13 13 N 1.34780 * 119.99943 * 173.48088 * 11 10 5 14 14 C 1.46503 * 119.99912 * 179.72803 * 13 11 10 15 15 C 1.53002 * 109.46919 * 180.27189 * 14 13 11 16 16 C 1.50697 * 109.46927 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99980 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00063 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00442 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99999 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47148 * 89.99844 * 20 18 16 22 22 H 1.48495 * 109.46938 * 210.00212 * 20 18 16 23 23 H 1.48501 * 109.46623 * 330.00141 * 20 18 16 24 24 H 1.09001 * 109.46929 * 300.00314 * 1 2 3 25 25 H 1.08997 * 109.46981 * 60.00157 * 1 2 3 26 26 H 1.09001 * 109.46771 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47001 * 146.36334 * 3 2 1 28 28 H 1.09001 * 109.46916 * 266.36626 * 3 2 1 29 29 H 1.09001 * 109.46849 * 26.36082 * 3 2 1 30 30 H 1.08997 * 109.46991 * 331.31451 * 4 2 1 31 31 H 1.09006 * 109.46839 * 91.31231 * 4 2 1 32 32 H 1.08995 * 109.46788 * 211.31259 * 4 2 1 33 33 H 1.07998 * 119.92853 * 359.97438 * 6 5 2 34 34 H 1.08001 * 119.85611 * 180.02562 * 7 6 5 35 35 H 1.07999 * 119.92409 * 179.97438 * 8 7 6 36 36 H 1.08005 * 120.07149 * 180.27758 * 9 8 7 37 37 H 0.97004 * 119.99844 * 359.97438 * 13 11 10 38 38 H 1.08996 * 109.47231 * 300.27071 * 14 13 11 39 39 H 1.08995 * 109.47194 * 60.27546 * 14 13 11 40 40 H 1.08996 * 109.47073 * 299.99979 * 15 14 13 41 41 H 1.08995 * 109.46896 * 60.00174 * 15 14 13 42 42 H 0.96998 * 120.00556 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2306 6 6 1.1398 -1.3062 2.0977 7 6 1.5993 -1.9591 3.2274 8 6 2.9555 -2.0187 3.4961 9 6 3.8587 -1.4312 2.6349 10 6 3.4014 -0.7672 1.4953 11 6 4.3635 -0.1309 0.5705 12 8 3.9756 0.3396 -0.4810 13 7 5.6708 -0.0725 0.8934 14 6 6.6250 0.5528 -0.0258 15 6 8.0313 0.4812 0.5728 16 6 9.0130 1.1237 -0.3730 17 1 8.6683 1.5418 -1.3072 18 6 10.3512 1.1780 -0.0455 19 7 11.2079 1.7392 -0.8706 20 14 10.9475 0.4543 1.5701 21 1 11.3093 -0.9720 1.3700 22 1 12.1391 1.2061 2.0393 23 1 9.8682 0.5535 2.5852 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9678 1.4999 0.5692 28 1 2.2226 1.7634 -1.0256 29 1 1.2930 2.0920 0.4563 30 1 1.3113 -1.4700 -1.5594 31 1 2.1834 0.0011 -2.0528 32 1 2.9889 -1.2087 -1.0252 33 1 0.0801 -1.2629 1.8940 34 1 0.8965 -2.4243 3.9028 35 1 3.3077 -2.5296 4.3800 36 1 4.9172 -1.4823 2.8433 37 1 5.9803 -0.4476 1.7327 38 1 6.6090 0.0260 -0.9799 39 1 6.3493 1.5957 -0.1818 40 1 8.0473 1.0079 1.5269 41 1 8.3071 -0.5617 0.7288 42 1 12.1493 1.7777 -0.6401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132680278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:43 Heat of formation + Delta-G solvation = -4.141805 kcal Electronic energy + Delta-G solvation = -21483.717099 eV Core-core repulsion = 18429.063728 eV Total energy + Delta-G solvation = -3054.653371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87594 -38.28922 -36.57584 -34.77439 -32.84900 -31.58745 -30.20968 -29.79413 -27.24788 -27.01733 -25.30803 -23.26799 -22.90336 -20.86153 -20.23385 -19.13766 -17.77377 -16.92061 -15.86976 -15.55710 -15.40016 -14.87649 -14.56147 -14.40753 -14.15781 -14.14138 -13.70427 -13.63794 -12.98514 -12.59927 -12.42673 -12.21806 -12.05242 -11.75122 -11.61262 -11.48801 -11.39516 -10.94438 -10.71100 -10.65680 -10.48685 -10.29891 -10.13621 -9.96142 -9.40160 -9.15871 -9.05719 -8.82601 -8.63597 -8.38401 -6.12150 -4.12337 0.83637 1.24850 3.03212 3.24209 3.31968 3.33024 3.58088 3.85213 4.36646 4.54057 4.63352 4.75690 4.90964 5.02529 5.13211 5.20813 5.24558 5.36399 5.36779 5.65840 5.72601 5.77639 5.82785 5.94014 6.02026 6.03770 6.12174 6.14830 6.19563 6.28219 6.28607 6.41475 6.44955 6.54661 6.65214 6.72115 6.77961 6.80336 7.13082 7.21809 7.65473 7.90032 8.42261 8.55924 8.92116 9.48009 11.00894 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.004228 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.949131 B = 6621.709060 C = 7522.574693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.022 4.022 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.012 4.012 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.136 4.136 9 C -0.085 4.085 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.516 6.516 13 N -0.722 5.722 14 C 0.132 3.868 15 C -0.023 4.023 16 C -0.522 4.522 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.393 0.607 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.017 0.983 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.107 -7.532 8.575 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 C -0.176 4.176 4 C -0.172 4.172 5 C -0.013 4.013 6 C -0.153 4.153 7 C -0.115 4.115 8 C -0.154 4.154 9 C -0.104 4.104 10 C -0.133 4.133 11 C 0.324 3.676 12 O -0.394 6.394 13 N -0.373 5.373 14 C 0.010 3.990 15 C -0.060 4.060 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.132 4.132 19 N -0.537 5.537 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.191 1.191 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.227 0.773 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.035 0.965 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.146 -7.121 7.762 23.625 hybrid contribution 0.758 -0.611 1.365 1.677 sum -20.388 -7.731 9.128 23.638 Atomic orbital electron populations 1.22078 0.94882 1.01360 1.01764 1.19470 0.94183 0.96157 0.92425 1.22093 1.00057 0.92589 1.02840 1.21961 1.00266 0.99379 0.95603 1.20112 0.91538 0.94428 0.95219 1.21173 1.00027 0.99236 0.94854 1.21312 0.95701 0.97712 0.96817 1.21063 0.93288 1.01090 0.99955 1.21355 0.99957 0.95871 0.93204 1.19933 0.93824 1.02703 0.96849 1.18144 0.82380 0.80501 0.86615 1.90877 1.77480 1.46324 1.24755 1.46296 1.07314 1.60022 1.23633 1.21504 0.88237 0.97158 0.92106 1.19797 0.91645 0.97123 0.97476 1.20909 0.91273 1.38334 1.05569 0.90613 1.24996 0.96699 0.94733 0.96808 1.69901 1.03046 1.44228 1.36484 0.86762 0.78522 0.79411 0.84451 1.20213 1.21246 1.19103 0.92690 0.92246 0.92666 0.91517 0.91917 0.95123 0.94992 0.92079 0.91458 0.85146 0.85886 0.85670 0.85567 0.77258 0.91863 0.91841 0.96037 0.96489 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 6.77 37.16 0.25 -1.16 16 2 C -0.02 -0.28 0.75 -155.65 -0.12 -0.40 16 3 C -0.12 -1.67 7.54 37.16 0.28 -1.39 16 4 C -0.12 -1.58 7.57 37.16 0.28 -1.30 16 5 C -0.01 -0.15 4.73 -104.22 -0.49 -0.64 16 6 C -0.14 -1.40 8.98 -39.64 -0.36 -1.75 16 7 C -0.10 -0.89 10.04 -39.49 -0.40 -1.29 16 8 C -0.14 -1.31 10.03 -39.64 -0.40 -1.71 16 9 C -0.09 -0.97 9.52 -39.19 -0.37 -1.35 16 10 C -0.13 -1.78 5.31 -104.97 -0.56 -2.33 16 11 C 0.54 8.69 5.99 -12.33 -0.07 8.61 16 12 O -0.52 -9.26 8.78 5.32 0.05 -9.21 16 13 N -0.72 -11.89 5.51 -61.25 -0.34 -12.22 16 14 C 0.13 2.65 5.61 -4.04 -0.02 2.62 16 15 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 16 C -0.52 -14.55 9.66 -34.44 -0.33 -14.89 16 17 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 20 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 24 H 0.05 0.49 7.68 -51.93 -0.40 0.10 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.48 7.30 -51.93 -0.38 0.10 16 27 H 0.07 1.07 4.83 -51.93 -0.25 0.82 16 28 H 0.06 0.93 7.05 -51.93 -0.37 0.57 16 29 H 0.03 0.38 7.77 -51.93 -0.40 -0.02 16 30 H 0.03 0.38 7.80 -51.93 -0.40 -0.02 16 31 H 0.06 0.88 7.20 -51.93 -0.37 0.51 16 32 H 0.07 1.06 5.40 -51.93 -0.28 0.78 16 33 H 0.13 1.10 5.90 -52.49 -0.31 0.79 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 1.26 6.46 -52.48 -0.34 0.92 16 37 H 0.39 5.55 6.55 -40.82 -0.27 5.28 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 41 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -30.74 324.14 -8.06 -38.80 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.24 Total: 3.68 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.52 Total: -15.73 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.44 Total: -38.72 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.05 Total: -9.21 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.74 -8.06 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132680278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.661 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds