Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47080 * 2 1 4 4 C 1.53000 * 109.47266 * 239.99645 * 2 1 3 5 5 C 1.50704 * 109.46912 * 119.99382 * 2 1 3 6 6 C 1.37973 * 120.07479 * 3.96966 * 5 2 1 7 7 C 1.38337 * 120.14618 * 179.97438 * 6 5 2 8 8 C 1.38383 * 120.29076 * 0.02562 * 7 6 5 9 9 C 1.37939 * 120.14388 * 359.74289 * 8 7 6 10 10 C 1.39559 * 120.06997 * 183.94209 * 5 2 1 11 11 C 1.47842 * 120.14562 * 0.02562 * 10 5 2 12 12 O 1.21552 * 120.00416 * 353.48369 * 11 10 5 13 13 N 1.34780 * 119.99943 * 173.48088 * 11 10 5 14 14 C 1.46503 * 119.99912 * 179.72803 * 13 11 10 15 15 C 1.53002 * 109.46919 * 180.27189 * 14 13 11 16 16 C 1.50697 * 109.46927 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99980 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00063 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00442 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99999 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47148 * 89.99844 * 20 18 16 22 22 H 1.48495 * 109.46938 * 210.00212 * 20 18 16 23 23 H 1.48501 * 109.46623 * 330.00141 * 20 18 16 24 24 H 1.09001 * 109.46929 * 300.00314 * 1 2 3 25 25 H 1.08997 * 109.46981 * 60.00157 * 1 2 3 26 26 H 1.09001 * 109.46771 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47001 * 146.36334 * 3 2 1 28 28 H 1.09001 * 109.46916 * 266.36626 * 3 2 1 29 29 H 1.09001 * 109.46849 * 26.36082 * 3 2 1 30 30 H 1.08997 * 109.46991 * 331.31451 * 4 2 1 31 31 H 1.09006 * 109.46839 * 91.31231 * 4 2 1 32 32 H 1.08995 * 109.46788 * 211.31259 * 4 2 1 33 33 H 1.07998 * 119.92853 * 359.97438 * 6 5 2 34 34 H 1.08001 * 119.85611 * 180.02562 * 7 6 5 35 35 H 1.07999 * 119.92409 * 179.97438 * 8 7 6 36 36 H 1.08005 * 120.07149 * 180.27758 * 9 8 7 37 37 H 0.97004 * 119.99844 * 359.97438 * 13 11 10 38 38 H 1.08996 * 109.47231 * 300.27071 * 14 13 11 39 39 H 1.08995 * 109.47194 * 60.27546 * 14 13 11 40 40 H 1.08996 * 109.47073 * 299.99979 * 15 14 13 41 41 H 1.08995 * 109.46896 * 60.00174 * 15 14 13 42 42 H 0.96998 * 120.00556 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7103 1.2306 6 6 1.1398 -1.3062 2.0977 7 6 1.5993 -1.9591 3.2274 8 6 2.9555 -2.0187 3.4961 9 6 3.8587 -1.4312 2.6349 10 6 3.4014 -0.7672 1.4953 11 6 4.3635 -0.1309 0.5705 12 8 3.9756 0.3396 -0.4810 13 7 5.6708 -0.0725 0.8934 14 6 6.6250 0.5528 -0.0258 15 6 8.0313 0.4812 0.5728 16 6 9.0130 1.1237 -0.3730 17 1 8.6683 1.5418 -1.3072 18 6 10.3512 1.1780 -0.0455 19 7 11.2079 1.7392 -0.8706 20 14 10.9475 0.4543 1.5701 21 1 11.3093 -0.9720 1.3700 22 1 12.1391 1.2061 2.0393 23 1 9.8682 0.5535 2.5852 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9678 1.4999 0.5692 28 1 2.2226 1.7634 -1.0256 29 1 1.2930 2.0920 0.4563 30 1 1.3113 -1.4700 -1.5594 31 1 2.1834 0.0011 -2.0528 32 1 2.9889 -1.2087 -1.0252 33 1 0.0801 -1.2629 1.8940 34 1 0.8965 -2.4243 3.9028 35 1 3.3077 -2.5296 4.3800 36 1 4.9172 -1.4823 2.8433 37 1 5.9803 -0.4476 1.7327 38 1 6.6090 0.0260 -0.9799 39 1 6.3493 1.5957 -0.1818 40 1 8.0473 1.0079 1.5269 41 1 8.3071 -0.5617 0.7288 42 1 12.1493 1.7777 -0.6401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132680278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -22.694151 kcal Electronic energy + Delta-G solvation = -21484.521589 eV Core-core repulsion = 18429.063728 eV Total energy + Delta-G solvation = -3055.457861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92899 -39.39677 -37.60809 -36.28625 -34.75864 -32.79863 -31.47043 -30.94393 -28.15041 -28.12932 -27.02139 -24.46846 -23.76533 -22.64208 -21.42422 -20.09001 -19.02530 -18.81871 -17.02756 -16.78810 -16.54108 -16.26610 -15.84030 -15.61100 -15.39827 -15.25548 -14.98676 -14.78542 -14.58015 -14.01565 -13.40414 -13.32454 -13.18719 -13.10580 -12.80850 -12.71858 -12.39776 -12.33693 -12.17686 -11.92548 -11.76884 -11.70117 -11.58304 -11.52247 -11.37681 -10.79878 -10.47081 -9.96194 -9.81265 -9.60796 -8.31374 -6.38732 -0.05578 0.45443 1.37551 1.40255 1.51464 1.96171 2.27966 2.35523 2.92272 3.03621 3.64184 3.74112 3.88031 4.08660 4.21782 4.25614 4.34154 4.41967 4.42032 4.54404 4.54993 4.73264 4.80210 4.82676 4.89956 4.91759 4.95950 5.07206 5.16768 5.20065 5.20535 5.27435 5.38476 5.42364 5.47377 5.48118 5.51490 5.58449 5.65469 5.75510 6.01527 6.20765 6.62294 6.70659 7.25700 7.30564 8.85466 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025243 B = 0.004228 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.949131 B = 6621.709060 C = 7522.574693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.114 4.114 4 C -0.110 4.110 5 C -0.028 4.028 6 C -0.136 4.136 7 C -0.087 4.087 8 C -0.134 4.134 9 C -0.092 4.092 10 C -0.155 4.155 11 C 0.532 3.468 12 O -0.542 6.542 13 N -0.718 5.718 14 C 0.150 3.850 15 C -0.013 4.013 16 C -0.539 4.539 17 H 0.029 0.971 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.958 3.042 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.238 1.238 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.137 0.863 37 H 0.407 0.593 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.216 -9.793 12.341 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 C -0.171 4.171 4 C -0.167 4.167 5 C -0.029 4.029 6 C -0.153 4.153 7 C -0.105 4.105 8 C -0.151 4.151 9 C -0.110 4.110 10 C -0.158 4.158 11 C 0.322 3.678 12 O -0.422 6.422 13 N -0.370 5.370 14 C 0.026 3.974 15 C -0.050 4.050 16 C -0.577 4.577 17 H 0.047 0.953 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.780 3.220 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.161 1.161 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.244 0.756 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.291 -9.396 11.545 27.641 hybrid contribution 1.349 0.115 0.116 1.359 sum -21.942 -9.280 11.662 26.525 Atomic orbital electron populations 1.22035 0.92337 1.02650 1.02507 1.19456 0.96177 0.94657 0.92099 1.22003 0.99418 0.94502 1.01183 1.21869 0.99566 0.99245 0.96002 1.20203 0.91583 0.95382 0.95750 1.21456 1.00741 0.98535 0.94618 1.21770 0.96219 0.96102 0.96398 1.21449 0.93315 1.00147 1.00213 1.21561 1.01115 0.95660 0.92704 1.19789 0.93646 1.04689 0.97641 1.18692 0.82393 0.79922 0.86802 1.90870 1.77865 1.47341 1.26115 1.46034 1.07061 1.60299 1.23632 1.20977 0.88172 0.96162 0.92064 1.19645 0.91373 0.97428 0.96598 1.21240 0.92903 1.38525 1.05072 0.95307 1.26069 0.96676 0.95053 1.01399 1.70072 1.03624 1.46107 1.39224 0.85554 0.78473 0.78691 0.79274 1.18920 1.21139 1.16104 0.91380 0.92134 0.91039 0.93945 0.93918 0.93624 0.93221 0.93923 0.93988 0.82912 0.82375 0.82738 0.84543 0.75624 0.93786 0.93813 0.94689 0.94785 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 6.77 71.98 0.49 -1.91 16 2 C -0.02 -0.59 0.75 -52.92 -0.04 -0.63 16 3 C -0.11 -3.31 7.54 71.98 0.54 -2.77 16 4 C -0.11 -3.10 7.57 71.98 0.54 -2.55 16 5 C -0.03 -0.67 4.73 -19.61 -0.09 -0.76 16 6 C -0.14 -2.31 8.98 22.23 0.20 -2.11 16 7 C -0.09 -1.18 10.04 22.33 0.22 -0.96 16 8 C -0.13 -2.00 10.03 22.23 0.22 -1.78 16 9 C -0.09 -1.87 9.52 22.53 0.21 -1.66 16 10 C -0.15 -4.09 5.31 -20.09 -0.11 -4.20 16 11 C 0.53 17.70 5.99 86.78 0.52 18.22 16 12 O -0.54 -20.68 8.78 -3.88 -0.03 -20.72 16 13 N -0.72 -23.81 5.51 -465.97 -2.57 -26.37 16 14 C 0.15 6.25 5.61 86.38 0.48 6.74 16 15 C -0.01 -0.57 4.16 29.85 0.12 -0.45 16 16 C -0.54 -31.11 9.66 25.60 0.25 -30.86 16 17 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 18 C 0.01 0.30 5.47 84.65 0.46 0.76 16 19 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 20 Si 0.96 42.58 27.47 68.60 1.88 44.46 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 24 H 0.07 1.01 7.68 -2.39 -0.02 0.99 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.01 7.30 -2.39 -0.02 0.99 16 27 H 0.04 1.42 4.83 -2.39 -0.01 1.41 16 28 H 0.04 1.36 7.05 -2.39 -0.02 1.34 16 29 H 0.04 1.13 7.77 -2.39 -0.02 1.11 16 30 H 0.05 1.17 7.80 -2.39 -0.02 1.15 16 31 H 0.04 1.31 7.20 -2.38 -0.02 1.29 16 32 H 0.04 1.38 5.40 -2.39 -0.01 1.37 16 33 H 0.15 1.86 5.90 -2.91 -0.02 1.84 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.14 2.36 6.46 -2.91 -0.02 2.35 16 37 H 0.41 10.99 6.55 -92.71 -0.61 10.39 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 41 H 0.03 1.43 7.57 -2.39 -0.02 1.42 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -70.87 324.14 3.98 -66.89 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.36 Total: 19.97 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.04 Total: -24.92 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.27 Total: -85.69 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.03 Total: -20.72 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.88 Total: 44.46 kcal Total: -70.87 3.98 -66.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132680278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.200 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds