Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47219 * 2 1 4 4 C 1.52997 * 109.47375 * 240.00196 * 2 1 3 5 5 C 1.50706 * 109.47225 * 59.99739 * 4 2 1 6 6 H 1.08001 * 119.99631 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00057 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00443 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46885 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47309 * 120.00242 * 9 7 5 12 12 H 1.48506 * 109.46601 * 240.00009 * 9 7 5 13 13 C 1.52997 * 109.47092 * 119.99995 * 2 1 3 14 14 N 1.46495 * 109.47410 * 299.99855 * 13 2 1 15 15 C 1.39945 * 120.00153 * 179.97438 * 14 13 2 16 16 C 1.38878 * 120.19355 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.26825 * 180.17619 * 16 15 14 18 18 C 1.39276 * 120.34484 * 0.03883 * 17 16 15 19 19 C 1.38954 * 118.97917 * 359.61299 * 18 17 16 20 20 C 1.37647 * 120.84754 * 0.55055 * 19 18 17 21 21 C 1.51665 * 106.99515 * 180.53699 * 19 18 17 22 22 C 1.54699 * 101.94983 * 15.72677 * 21 19 18 23 23 O 1.36261 * 129.78494 * 179.53936 * 18 17 16 24 24 H 1.08999 * 109.46912 * 300.00280 * 1 2 3 25 25 H 1.09002 * 109.47102 * 59.99713 * 1 2 3 26 26 H 1.08998 * 109.46605 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46895 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46930 * 299.99847 * 3 2 1 29 29 H 1.09002 * 109.46565 * 60.00333 * 3 2 1 30 30 H 1.08995 * 109.47480 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.47240 * 300.00295 * 4 2 1 32 32 H 0.96998 * 120.00162 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47128 * 179.97438 * 13 2 1 34 34 H 1.09003 * 109.47186 * 60.00104 * 13 2 1 35 35 H 0.97001 * 119.99962 * 0.02562 * 14 13 2 36 36 H 1.08001 * 119.86436 * 0.19428 * 16 15 14 37 37 H 1.08004 * 119.82358 * 180.02562 * 17 16 15 38 38 H 1.08002 * 120.01102 * 179.66733 * 20 19 18 39 39 H 1.09002 * 110.94285 * 257.55073 * 21 19 18 40 40 H 1.08997 * 110.93728 * 133.89714 * 21 19 18 41 41 H 1.09000 * 110.74876 * 92.91789 * 22 21 19 42 42 H 1.09003 * 110.74883 * 216.08004 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7319 8 7 2.6266 -1.5513 -3.8527 9 14 1.2483 0.3989 -5.2572 10 1 0.4236 1.5659 -4.8530 11 1 2.4035 0.8648 -6.0656 12 1 0.4226 -0.5340 -6.0654 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8894 -0.5091 3.7164 16 6 2.6875 -1.6379 3.8485 17 6 3.0182 -2.1128 5.1001 18 6 2.5546 -1.4660 6.2431 19 6 1.7627 -0.3331 6.1012 20 6 1.4277 0.1421 4.8535 21 6 1.4272 0.1512 7.4987 22 6 2.4623 -0.6114 8.3591 23 8 2.7525 -1.7684 7.5569 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -1.7489 -1.2493 32 1 2.8603 -1.8831 -4.7337 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7578 2.3564 36 1 3.0510 -2.1457 2.9673 37 1 3.6397 -2.9910 5.1944 38 1 0.8069 1.0208 4.7589 39 1 0.4102 -0.1281 7.7742 40 1 1.5694 1.2286 7.5822 41 1 3.3590 -0.0098 8.5078 42 1 2.0300 -0.9008 9.3170 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135186831.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = -37.882251 kcal Electronic energy + Delta-G solvation = -20819.205210 eV Core-core repulsion = 17763.088744 eV Total energy + Delta-G solvation = -3056.116466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.83150 -39.76742 -38.16227 -35.22936 -33.98718 -33.46309 -30.39687 -29.65672 -28.67981 -27.95725 -27.00618 -24.73209 -24.32691 -22.92381 -21.83046 -19.76302 -18.37158 -18.22575 -17.93992 -17.47574 -16.85241 -16.49355 -15.74721 -15.63585 -15.05275 -14.86757 -14.47821 -14.37912 -14.23108 -13.97168 -13.88720 -13.74916 -13.43226 -13.19675 -12.91284 -12.68382 -12.65233 -12.51786 -12.33816 -12.21342 -11.93972 -11.92515 -11.63342 -11.46345 -10.96976 -10.82443 -10.51666 -10.30640 -9.74262 -8.14524 -7.98910 -6.21455 0.40081 0.65055 1.40497 1.42104 1.53304 2.40099 2.46089 2.65753 2.88624 3.20188 3.58169 3.81973 4.02514 4.05278 4.12685 4.21901 4.23975 4.35220 4.40489 4.60975 4.71097 4.73579 4.77521 4.78143 4.91418 4.95967 4.98778 5.02010 5.12602 5.16286 5.24751 5.41787 5.45265 5.50178 5.52478 5.53200 5.56508 5.64880 5.81993 5.90624 6.22160 6.33160 6.50489 6.92546 6.95812 7.46169 8.97994 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.049087 B = 0.003082 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.277350 B = 9084.284666 C = 9440.254191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.119 4.119 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.068 0.932 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.148 3.852 14 N -0.733 5.733 15 C 0.191 3.809 16 C -0.182 4.182 17 C -0.097 4.097 18 C 0.015 3.985 19 C -0.131 4.131 20 C -0.155 4.155 21 C -0.106 4.106 22 C 0.046 3.954 23 O -0.332 6.332 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.064 0.936 30 H -0.011 1.011 31 H -0.012 1.012 32 H 0.260 0.740 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.405 0.595 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 5.417 22.405 23.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C -0.177 4.177 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.086 0.914 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.183 1.183 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.023 3.977 14 N -0.364 5.364 15 C 0.088 3.912 16 C -0.204 4.204 17 C -0.116 4.116 18 C -0.030 4.030 19 C -0.132 4.132 20 C -0.177 4.177 21 C -0.143 4.143 22 C -0.028 4.028 23 O -0.247 6.247 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.242 0.758 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.100 0.900 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.805 5.013 22.234 22.964 hybrid contribution -0.105 0.181 -1.440 1.455 sum -2.910 5.194 20.794 21.630 Atomic orbital electron populations 1.21660 0.94130 1.00795 1.01092 1.20667 0.96298 0.96137 0.93353 1.21659 0.99862 0.95051 1.01092 1.18968 0.94363 0.94209 0.92133 1.21626 1.30264 1.11952 0.91288 0.91358 1.25898 0.95713 0.95883 1.02554 1.70109 1.38804 1.24906 1.24005 0.85542 0.78081 0.78829 0.79473 1.18342 1.20979 1.20998 1.21200 0.97486 0.95216 0.83791 1.44679 1.57435 1.33026 1.01300 1.17842 0.94524 0.93182 0.85701 1.20482 1.04138 0.98734 0.97090 1.20126 1.01163 1.01256 0.89082 1.19489 1.00775 0.97799 0.84974 1.20835 0.99067 0.97427 0.95897 1.19825 1.05821 1.02933 0.89144 1.21889 1.00983 1.02637 0.88750 1.24034 0.98593 0.85025 0.95161 1.86763 1.86676 1.37260 1.14034 0.91760 0.93077 0.94367 0.94339 0.93078 0.91757 0.99290 0.99316 0.93162 0.93493 0.93539 0.75811 0.85638 0.85085 0.84166 0.88076 0.87198 0.90037 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 2 C -0.06 -2.38 0.54 -52.18 -0.03 -2.41 16 3 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 4 C 0.04 2.03 4.04 29.85 0.12 2.15 16 5 C -0.51 -27.40 7.65 25.60 0.20 -27.21 16 6 H 0.07 3.47 5.68 -2.91 -0.02 3.45 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -56.34 13.29 21.44 0.28 -56.06 16 9 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 10 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.15 4.86 3.81 86.38 0.33 5.19 16 14 N -0.73 -19.87 5.15 -339.19 -1.75 -21.62 16 15 C 0.19 5.18 6.66 38.17 0.25 5.44 16 16 C -0.18 -5.13 9.30 22.34 0.21 -4.93 16 17 C -0.10 -2.63 10.05 22.44 0.23 -2.40 16 18 C 0.02 0.41 7.04 22.69 0.16 0.57 16 19 C -0.13 -2.98 6.27 -19.52 -0.12 -3.10 16 20 C -0.15 -3.62 9.89 22.30 0.22 -3.40 16 21 C -0.11 -1.54 7.11 30.74 0.22 -1.32 16 22 C 0.05 0.68 8.01 72.56 0.58 1.26 16 23 O -0.33 -8.07 11.11 -96.54 -1.07 -9.14 16 24 H 0.06 1.75 6.86 -2.39 -0.02 1.73 16 25 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 29 H 0.06 1.74 6.86 -2.39 -0.02 1.73 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 32 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.05 1.62 7.95 -2.38 -0.02 1.60 16 34 H 0.05 1.60 7.96 -2.39 -0.02 1.59 16 35 H 0.40 9.66 6.18 -92.71 -0.57 9.08 16 36 H 0.13 3.58 6.74 -2.91 -0.02 3.56 16 37 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -64.66 333.36 3.91 -60.75 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.44 Total: 17.39 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 3.98 Total: -36.90 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.46 Total: -77.68 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -1.07 Total: -9.14 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -64.66 3.91 -60.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135186831.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.864 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds