Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.81748 * 2 1 4 4 C 1.53429 * 109.77501 * 120.77947 * 2 1 3 5 5 N 1.46760 * 108.60254 * 182.87489 * 4 2 1 6 6 C 1.46894 * 110.99675 * 185.02916 * 5 4 2 7 7 C 1.52994 * 109.47241 * 66.01959 * 6 5 4 8 8 C 1.52998 * 109.47384 * 174.80477 * 7 6 5 9 9 C 1.50695 * 109.47535 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00655 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99754 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00585 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46953 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47428 * 119.99653 * 13 11 9 16 16 H 1.48508 * 109.46850 * 239.99868 * 13 11 9 17 17 C 1.39849 * 112.13380 * 309.81833 * 5 4 2 18 18 C 1.39148 * 118.58746 * 199.86253 * 17 5 4 19 19 C 1.38068 * 120.24206 * 180.27938 * 18 17 5 20 20 C 1.38260 * 120.11326 * 359.94526 * 19 18 17 21 21 C 1.38179 * 120.02896 * 359.89813 * 20 19 18 22 22 C 1.38769 * 120.20499 * 0.05133 * 21 20 19 23 23 O 1.36158 * 118.74168 * 180.18533 * 22 21 20 24 24 H 1.09000 * 109.47150 * 299.22122 * 1 2 3 25 25 H 1.09001 * 109.46543 * 59.21937 * 1 2 3 26 26 H 1.08999 * 109.46992 * 179.21574 * 1 2 3 27 27 H 1.09004 * 109.47181 * 180.78182 * 3 2 1 28 28 H 1.08994 * 109.47139 * 300.77762 * 3 2 1 29 29 H 1.09000 * 109.47461 * 60.77984 * 3 2 1 30 30 H 1.08999 * 109.61142 * 63.14435 * 4 2 1 31 31 H 1.08996 * 109.61245 * 302.60992 * 4 2 1 32 32 H 1.08994 * 109.47444 * 306.01695 * 6 5 4 33 33 H 1.09000 * 109.47113 * 186.01878 * 6 5 4 34 34 H 1.08995 * 109.47630 * 294.80509 * 7 6 5 35 35 H 1.09003 * 109.46979 * 54.80786 * 7 6 5 36 36 H 1.09004 * 109.47236 * 300.00227 * 8 7 6 37 37 H 1.08999 * 109.47522 * 60.00104 * 8 7 6 38 38 H 0.96999 * 120.00232 * 179.97438 * 12 11 9 39 39 H 1.07999 * 119.88154 * 0.22365 * 18 17 5 40 40 H 1.07995 * 119.94068 * 179.97438 * 19 18 17 41 41 H 1.07998 * 119.98163 * 179.91373 * 20 19 18 42 42 H 1.08004 * 119.89198 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0487 1.4394 0.0000 4 6 2.0491 -0.7388 1.2404 5 7 3.5147 -0.6638 1.2508 6 6 4.0745 -1.4567 2.3535 7 6 3.7871 -2.9399 2.1124 8 6 4.4799 -3.7756 3.1905 9 6 4.1973 -5.2366 2.9527 10 1 3.5844 -5.5389 2.1164 11 6 4.7203 -6.1874 3.8032 12 7 5.4662 -5.8193 4.8220 13 14 4.3706 -7.9985 3.5080 14 1 3.5128 -8.1472 2.3049 15 1 5.6502 -8.7217 3.2966 16 1 3.6701 -8.5662 4.6881 17 6 4.0706 -1.0463 0.0259 18 6 5.4076 -1.4304 -0.0076 19 6 5.9927 -1.8089 -1.1995 20 6 5.2517 -1.8091 -2.3667 21 6 3.9225 -1.4322 -2.3421 22 6 3.3269 -1.0515 -1.1479 23 8 2.0144 -0.6894 -1.1572 24 1 -0.3633 0.5017 0.8969 25 1 -0.3632 0.5259 -0.8829 26 1 -0.3633 -1.0276 -0.0141 27 1 3.1386 1.4329 -0.0140 28 1 1.6772 1.9595 -0.8829 29 1 1.7000 1.9513 0.8969 30 1 1.7364 -1.7823 1.2023 31 1 1.6522 -0.2678 2.1396 32 1 3.6175 -1.1461 3.2930 33 1 5.1519 -1.2989 2.4040 34 1 2.7118 -3.1131 2.1537 35 1 4.1641 -3.2282 1.1311 36 1 5.5553 -3.6025 3.1492 37 1 4.1030 -3.4874 4.1718 38 1 5.8338 -6.4882 5.4206 39 1 5.9900 -1.4317 0.9019 40 1 7.0309 -2.1058 -1.2200 41 1 5.7119 -2.1042 -3.2981 42 1 3.3456 -1.4336 -3.2551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135499620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = -16.292373 kcal Electronic energy + Delta-G solvation = -21980.185028 eV Core-core repulsion = 18925.004769 eV Total energy + Delta-G solvation = -3055.180259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23037 -37.77504 -36.95044 -33.82950 -33.24990 -31.27116 -30.18707 -28.82877 -27.46797 -27.07173 -25.15065 -23.40666 -22.49190 -21.47910 -20.28914 -19.07453 -18.04886 -16.50598 -16.17500 -16.00397 -15.03663 -14.94155 -14.44840 -14.42012 -14.13733 -13.94234 -13.56401 -13.47000 -12.84855 -12.65761 -12.32218 -12.29162 -12.24098 -11.88298 -11.76761 -11.50673 -11.29278 -11.18629 -10.91915 -10.87216 -10.72494 -10.59272 -10.24578 -9.92649 -9.57912 -9.31211 -9.07577 -8.37232 -8.23431 -7.30552 -6.02009 -4.04285 1.57098 1.65137 3.27254 3.29603 3.37191 3.42015 3.74768 4.18267 4.44602 4.49627 4.76346 4.81827 4.87675 5.22583 5.31347 5.33795 5.38419 5.44264 5.50050 5.53695 5.61611 5.64249 5.66783 5.78748 5.82099 5.86662 5.95138 6.08645 6.13936 6.19019 6.32698 6.41023 6.55532 6.68696 6.78776 6.89185 7.01654 7.19694 7.26455 7.62866 7.66716 7.76092 7.96853 8.40461 9.02305 9.60102 11.09098 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.005023 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.741901 B = 5572.715710 C = 6123.428442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.109 3.891 3 C -0.161 4.161 4 C 0.022 3.978 5 N -0.487 5.487 6 C 0.052 3.948 7 C -0.143 4.143 8 C 0.027 3.973 9 C -0.518 4.518 10 H 0.053 0.947 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.060 3.940 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.120 4.120 21 C -0.130 4.130 22 C 0.084 3.916 23 O -0.311 6.311 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.017 0.983 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 13.820 -10.904 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.071 3.929 3 C -0.218 4.218 4 C -0.105 4.105 5 N -0.201 5.201 6 C -0.073 4.073 7 C -0.181 4.181 8 C -0.010 4.010 9 C -0.557 4.557 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.718 3.282 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.038 4.038 18 C -0.136 4.136 19 C -0.144 4.144 20 C -0.140 4.140 21 C -0.149 4.149 22 C 0.037 3.963 23 O -0.226 6.226 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.444 14.236 -10.730 18.640 hybrid contribution -0.213 -1.780 0.106 1.796 sum -5.657 12.456 -10.624 17.321 Atomic orbital electron populations 1.21747 0.91267 1.03422 1.03023 1.22013 0.95033 0.92004 0.83863 1.22196 1.02990 0.94471 1.02150 1.22843 0.87515 1.01022 0.99079 1.59136 1.05791 1.52550 1.02632 1.22543 1.00597 0.92529 0.91624 1.22245 1.00569 0.93361 1.01941 1.18999 0.95469 0.93837 0.92724 1.21255 1.31178 0.91625 1.11607 0.92859 1.25006 0.95159 0.99019 0.95164 1.69969 1.34226 1.33611 1.15688 0.86565 0.78106 0.85404 0.78140 1.19772 1.20931 1.20988 1.18844 0.94631 1.00863 0.89478 1.20987 0.93264 1.00351 0.99015 1.20895 1.00084 1.01153 0.92263 1.20778 0.93336 1.01500 0.98344 1.20350 0.95030 1.04023 0.95530 1.18591 0.83244 1.01151 0.93293 1.86232 1.22394 1.72457 1.41503 0.90325 0.91289 0.91404 0.91055 0.92213 0.91192 0.91726 0.88683 0.90306 0.89914 0.93459 0.92517 0.96502 0.96641 0.93055 0.85124 0.85938 0.85902 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.90 37.16 0.33 -1.01 16 2 C 0.11 1.38 1.14 -90.40 -0.10 1.27 16 3 C -0.16 -1.83 8.48 37.16 0.32 -1.52 16 4 C 0.02 0.32 4.35 -3.68 -0.02 0.30 16 5 N -0.49 -7.61 4.09 -170.83 -0.70 -8.31 16 6 C 0.05 0.88 4.87 -3.83 -0.02 0.86 16 7 C -0.14 -2.96 4.48 -26.73 -0.12 -3.08 16 8 C 0.03 0.70 4.97 -27.89 -0.14 0.56 16 9 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 10 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 13 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 C 0.06 0.99 4.13 -83.59 -0.34 0.64 16 18 C -0.12 -1.85 7.94 -39.31 -0.31 -2.17 16 19 C -0.13 -1.80 10.03 -39.64 -0.40 -2.20 16 20 C -0.12 -1.62 10.04 -39.60 -0.40 -2.02 16 21 C -0.13 -1.88 9.94 -39.41 -0.39 -2.27 16 22 C 0.08 1.35 6.07 -39.12 -0.24 1.11 16 23 O -0.31 -4.74 9.80 -20.24 -0.20 -4.94 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.95 6.76 -51.93 -0.35 0.60 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.03 6.38 -51.93 -0.33 0.70 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.28 8.12 -51.93 -0.42 0.85 16 33 H 0.08 1.39 6.21 -51.93 -0.32 1.07 16 34 H 0.05 0.99 6.71 -51.93 -0.35 0.64 16 35 H 0.06 1.24 6.23 -51.93 -0.32 0.92 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.13 2.07 6.05 -52.49 -0.32 1.76 16 40 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -31.16 329.76 -9.06 -40.23 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.61 Total: 0.44 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.24 Total: -23.09 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.04 Total: -34.47 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: -0.20 Total: -4.94 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.16 -9.06 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135499620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.935 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds