Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.81748 * 2 1 4 4 C 1.53429 * 109.77501 * 120.77947 * 2 1 3 5 5 N 1.46760 * 108.60254 * 182.87489 * 4 2 1 6 6 C 1.46894 * 110.99675 * 185.02916 * 5 4 2 7 7 C 1.52994 * 109.47241 * 66.01959 * 6 5 4 8 8 C 1.52998 * 109.47384 * 174.80477 * 7 6 5 9 9 C 1.50695 * 109.47535 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00655 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99754 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00585 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46953 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47428 * 119.99653 * 13 11 9 16 16 H 1.48508 * 109.46850 * 239.99868 * 13 11 9 17 17 C 1.39849 * 112.13380 * 309.81833 * 5 4 2 18 18 C 1.39148 * 118.58746 * 199.86253 * 17 5 4 19 19 C 1.38068 * 120.24206 * 180.27938 * 18 17 5 20 20 C 1.38260 * 120.11326 * 359.94526 * 19 18 17 21 21 C 1.38179 * 120.02896 * 359.89813 * 20 19 18 22 22 C 1.38769 * 120.20499 * 0.05133 * 21 20 19 23 23 O 1.36158 * 118.74168 * 180.18533 * 22 21 20 24 24 H 1.09000 * 109.47150 * 299.22122 * 1 2 3 25 25 H 1.09001 * 109.46543 * 59.21937 * 1 2 3 26 26 H 1.08999 * 109.46992 * 179.21574 * 1 2 3 27 27 H 1.09004 * 109.47181 * 180.78182 * 3 2 1 28 28 H 1.08994 * 109.47139 * 300.77762 * 3 2 1 29 29 H 1.09000 * 109.47461 * 60.77984 * 3 2 1 30 30 H 1.08999 * 109.61142 * 63.14435 * 4 2 1 31 31 H 1.08996 * 109.61245 * 302.60992 * 4 2 1 32 32 H 1.08994 * 109.47444 * 306.01695 * 6 5 4 33 33 H 1.09000 * 109.47113 * 186.01878 * 6 5 4 34 34 H 1.08995 * 109.47630 * 294.80509 * 7 6 5 35 35 H 1.09003 * 109.46979 * 54.80786 * 7 6 5 36 36 H 1.09004 * 109.47236 * 300.00227 * 8 7 6 37 37 H 1.08999 * 109.47522 * 60.00104 * 8 7 6 38 38 H 0.96999 * 120.00232 * 179.97438 * 12 11 9 39 39 H 1.07999 * 119.88154 * 0.22365 * 18 17 5 40 40 H 1.07995 * 119.94068 * 179.97438 * 19 18 17 41 41 H 1.07998 * 119.98163 * 179.91373 * 20 19 18 42 42 H 1.08004 * 119.89198 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0487 1.4394 0.0000 4 6 2.0491 -0.7388 1.2404 5 7 3.5147 -0.6638 1.2508 6 6 4.0745 -1.4567 2.3535 7 6 3.7871 -2.9399 2.1124 8 6 4.4799 -3.7756 3.1905 9 6 4.1973 -5.2366 2.9527 10 1 3.5844 -5.5389 2.1164 11 6 4.7203 -6.1874 3.8032 12 7 5.4662 -5.8193 4.8220 13 14 4.3706 -7.9985 3.5080 14 1 3.5128 -8.1472 2.3049 15 1 5.6502 -8.7217 3.2966 16 1 3.6701 -8.5662 4.6881 17 6 4.0706 -1.0463 0.0259 18 6 5.4076 -1.4304 -0.0076 19 6 5.9927 -1.8089 -1.1995 20 6 5.2517 -1.8091 -2.3667 21 6 3.9225 -1.4322 -2.3421 22 6 3.3269 -1.0515 -1.1479 23 8 2.0144 -0.6894 -1.1572 24 1 -0.3633 0.5017 0.8969 25 1 -0.3632 0.5259 -0.8829 26 1 -0.3633 -1.0276 -0.0141 27 1 3.1386 1.4329 -0.0140 28 1 1.6772 1.9595 -0.8829 29 1 1.7000 1.9513 0.8969 30 1 1.7364 -1.7823 1.2023 31 1 1.6522 -0.2678 2.1396 32 1 3.6175 -1.1461 3.2930 33 1 5.1519 -1.2989 2.4040 34 1 2.7118 -3.1131 2.1537 35 1 4.1641 -3.2282 1.1311 36 1 5.5553 -3.6025 3.1492 37 1 4.1030 -3.4874 4.1718 38 1 5.8338 -6.4882 5.4206 39 1 5.9900 -1.4317 0.9019 40 1 7.0309 -2.1058 -1.2200 41 1 5.7119 -2.1042 -3.2981 42 1 3.3456 -1.4336 -3.2551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135499620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = -33.822973 kcal Electronic energy + Delta-G solvation = -21980.945212 eV Core-core repulsion = 18925.004769 eV Total energy + Delta-G solvation = -3055.940443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.37014 -38.89349 -38.21594 -35.65102 -34.49572 -33.10883 -31.32744 -30.08734 -28.66098 -28.27078 -26.66098 -24.90903 -23.59682 -23.03852 -21.86829 -20.16817 -19.20516 -18.52865 -17.44078 -17.14589 -16.63243 -16.15255 -15.98379 -15.80593 -15.38620 -15.17358 -14.86157 -14.65498 -14.29148 -14.02621 -13.74312 -13.36023 -13.20292 -13.10667 -13.03587 -12.85076 -12.71020 -12.67923 -12.50427 -12.42696 -12.25526 -11.84247 -11.70526 -11.46781 -11.36557 -11.19801 -10.68981 -10.56253 -9.40034 -8.53602 -8.22747 -6.34845 0.41213 0.49197 1.35891 1.36485 1.49522 2.22843 2.37322 2.59572 3.00429 3.09010 3.46308 3.67640 3.83648 3.87106 4.10018 4.13428 4.22854 4.32435 4.38579 4.40041 4.53399 4.56264 4.59015 4.71652 4.76179 4.83090 4.84697 4.90689 4.98589 5.03193 5.13097 5.16349 5.22098 5.28525 5.37426 5.44787 5.62571 5.66088 5.75937 5.79630 5.95233 6.08179 6.21301 6.52785 6.80238 7.34345 8.87625 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.005023 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.741901 B = 5572.715710 C = 6123.428442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.104 3.896 3 C -0.154 4.154 4 C 0.018 3.982 5 N -0.481 5.481 6 C 0.063 3.937 7 C -0.121 4.121 8 C 0.034 3.966 9 C -0.543 4.543 10 H 0.049 0.951 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.960 3.040 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.275 1.275 17 C 0.040 3.960 18 C -0.136 4.136 19 C -0.134 4.134 20 C -0.114 4.114 21 C -0.139 4.139 22 C 0.069 3.931 23 O -0.323 6.323 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.041 0.959 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.043 0.957 36 H -0.004 1.004 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.156 0.844 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 13.968 -12.067 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.066 3.934 3 C -0.211 4.211 4 C -0.108 4.108 5 N -0.195 5.195 6 C -0.063 4.063 7 C -0.160 4.160 8 C -0.004 4.004 9 C -0.581 4.581 10 H 0.067 0.933 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.785 3.215 14 H -0.192 1.192 15 H -0.201 1.201 16 H -0.200 1.200 17 C -0.059 4.059 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.133 4.133 21 C -0.158 4.158 22 C 0.022 3.978 23 O -0.238 6.238 24 H 0.121 0.879 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.015 0.985 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.159 0.841 41 H 0.173 0.827 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.337 14.399 -11.907 19.730 hybrid contribution 0.080 -1.812 0.436 1.866 sum -6.257 12.587 -11.471 18.143 Atomic orbital electron populations 1.21791 0.88946 1.03486 1.04805 1.22319 0.96683 0.92119 0.82248 1.22143 1.01442 0.93864 1.03662 1.22983 0.86584 1.00208 1.01067 1.59191 1.06655 1.51629 1.02011 1.22337 1.00916 0.90141 0.92867 1.21950 0.99380 0.95299 0.99332 1.18864 0.94486 0.93708 0.93345 1.21625 1.31457 0.93339 1.11722 0.93314 1.25890 0.94732 1.03918 0.94749 1.70078 1.34936 1.35384 1.16486 0.85474 0.78271 0.79428 0.78354 1.19215 1.20056 1.19997 1.19000 0.94955 1.01977 0.89920 1.21124 0.93491 1.01413 0.99617 1.21209 1.01193 1.00725 0.92094 1.21170 0.92926 0.99930 0.99252 1.20723 0.95725 1.03507 0.95805 1.18871 0.83692 1.01499 0.93718 1.86217 1.22032 1.72837 1.42726 0.87915 0.90146 0.92186 0.93331 0.91126 0.89244 0.94027 0.86612 0.89241 0.90018 0.93896 0.93828 0.98571 0.98465 0.92635 0.85914 0.84094 0.82651 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.90 71.98 0.64 -1.68 16 2 C 0.10 2.49 1.14 -10.65 -0.01 2.48 16 3 C -0.15 -3.25 8.48 71.98 0.61 -2.64 16 4 C 0.02 0.50 4.35 86.47 0.38 0.88 16 5 N -0.48 -15.05 4.09 -694.37 -2.84 -17.89 16 6 C 0.06 2.18 4.87 86.30 0.42 2.60 16 7 C -0.12 -5.17 4.48 30.59 0.14 -5.04 16 8 C 0.03 1.79 4.97 29.85 0.15 1.94 16 9 C -0.54 -31.72 9.11 25.60 0.23 -31.48 16 10 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 11 C 0.01 0.31 5.46 84.65 0.46 0.77 16 12 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 13 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 C 0.04 1.31 4.13 38.25 0.16 1.46 16 18 C -0.14 -4.43 7.94 22.45 0.18 -4.25 16 19 C -0.13 -3.74 10.03 22.23 0.22 -3.52 16 20 C -0.11 -2.87 10.04 22.26 0.22 -2.64 16 21 C -0.14 -3.83 9.94 22.38 0.22 -3.60 16 22 C 0.07 2.19 6.07 22.57 0.14 2.33 16 23 O -0.32 -9.61 9.80 -95.35 -0.93 -10.54 16 24 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.26 6.76 -2.39 -0.02 1.24 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.33 6.38 -2.39 -0.02 1.32 16 31 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.09 2.90 8.12 -2.39 -0.02 2.88 16 33 H 0.08 2.84 6.21 -2.39 -0.01 2.83 16 34 H 0.04 1.85 6.71 -2.39 -0.02 1.83 16 35 H 0.04 1.97 6.23 -2.39 -0.01 1.95 16 36 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.12 4.06 6.05 -2.91 -0.02 4.04 16 40 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 42 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -67.56 329.76 3.68 -63.88 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.99 Total: 16.16 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 4.16 Total: -42.39 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -2.56 Total: -74.08 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.93 Total: -10.54 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.56 3.68 -63.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135499620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.059 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds