Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47300 * 2 1 4 4 C 1.52998 * 109.47566 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47366 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00284 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99918 * 179.72368 * 5 4 3 8 8 C 1.46503 * 120.00040 * 175.34598 * 7 5 4 9 9 H 1.09003 * 109.46946 * 38.57415 * 8 7 5 10 10 C 1.53001 * 109.47048 * 158.57143 * 8 7 5 11 11 C 1.50700 * 109.47288 * 294.53293 * 10 8 7 12 12 H 1.08001 * 119.99898 * 354.98990 * 11 10 8 13 13 C 1.37878 * 120.00052 * 174.98463 * 11 10 8 14 14 N 1.31513 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99995 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47090 * 90.00455 * 15 13 11 17 17 H 1.48504 * 109.47083 * 210.00342 * 15 13 11 18 18 H 1.48499 * 109.47308 * 330.00544 * 15 13 11 19 19 C 1.50696 * 109.47126 * 278.57265 * 8 7 5 20 20 C 1.38232 * 119.99904 * 319.72733 * 19 8 7 21 21 C 1.38234 * 120.00184 * 179.78908 * 20 19 8 22 22 C 1.38240 * 119.99558 * 0.43727 * 21 20 19 23 23 C 1.38233 * 120.00117 * 359.81385 * 22 21 20 24 24 C 1.38233 * 120.00042 * 140.00169 * 19 8 7 25 25 H 1.08997 * 109.47665 * 300.00282 * 1 2 3 26 26 H 1.09008 * 109.47083 * 60.00203 * 1 2 3 27 27 H 1.08995 * 109.47252 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47665 * 239.99717 * 2 1 3 29 29 H 1.09002 * 109.47461 * 119.99598 * 2 1 3 30 30 H 1.08995 * 109.47500 * 59.99265 * 3 2 1 31 31 H 1.09008 * 109.46887 * 299.99918 * 3 2 1 32 32 H 1.08995 * 109.47479 * 59.99047 * 4 3 2 33 33 H 1.09008 * 109.46783 * 299.99776 * 4 3 2 34 34 H 0.96998 * 120.00364 * 355.33878 * 7 5 4 35 35 H 1.09000 * 109.47246 * 54.53130 * 10 8 7 36 36 H 1.09004 * 109.46725 * 174.53252 * 10 8 7 37 37 H 0.97000 * 120.00045 * 179.97438 * 14 13 11 38 38 H 1.08003 * 120.00180 * 359.97438 * 20 19 8 39 39 H 1.07997 * 120.00685 * 180.27366 * 21 20 19 40 40 H 1.08001 * 119.99928 * 179.83720 * 22 21 20 41 41 H 1.08004 * 120.00270 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.00151 * 359.97291 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8633 -0.0013 6 8 3.2842 3.7852 -0.0017 7 7 5.3973 3.1096 0.0037 8 6 5.8869 4.4865 -0.0998 9 1 5.2390 5.1468 0.4768 10 6 7.3127 4.5635 0.4498 11 6 7.2983 4.2661 1.9271 12 1 6.3587 4.1242 2.4403 13 6 8.4848 4.1750 2.6236 14 7 9.6290 4.3482 1.9987 15 14 8.4670 3.8071 4.4549 16 1 8.5186 2.3379 4.6651 17 1 9.6456 4.4409 5.0986 18 1 7.2227 4.3498 5.0568 19 6 5.8818 4.9141 -1.5448 20 6 6.2779 4.0281 -2.5292 21 6 6.2691 4.4189 -3.8551 22 6 5.8727 5.6987 -4.1958 23 6 5.4816 6.5864 -3.2110 24 6 5.4864 6.1942 -1.8855 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.9330 0.9288 -0.8907 33 1 3.9336 0.9286 0.8892 34 1 6.0269 2.3752 0.0760 35 1 7.9393 3.8330 -0.0618 36 1 7.7122 5.5641 0.2845 37 1 10.4637 4.2846 2.4887 38 1 6.5914 3.0296 -2.2626 39 1 6.5743 3.7253 -4.6246 40 1 5.8683 6.0049 -5.2315 41 1 5.1723 7.5864 -3.4771 42 1 5.1807 6.8877 -1.1160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153201922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -47.390243 kcal Electronic energy + Delta-G solvation = -21009.269919 eV Core-core repulsion = 17952.741155 eV Total energy + Delta-G solvation = -3056.528764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62840 -38.43532 -35.59630 -34.86046 -32.72898 -31.37625 -30.48441 -30.03203 -28.72349 -25.31251 -24.10148 -22.27946 -21.94612 -21.18664 -20.06112 -19.58361 -16.93483 -16.35626 -16.15609 -15.82882 -15.41475 -14.84136 -14.53395 -14.24370 -14.09562 -13.68578 -13.24281 -13.10939 -12.93217 -12.54691 -12.35725 -12.23107 -12.10823 -11.59617 -11.27589 -11.16078 -11.13140 -11.00822 -10.86932 -10.73247 -10.59694 -10.54639 -10.47259 -9.74608 -9.35903 -9.22582 -8.53778 -8.46260 -8.36480 -8.16211 -6.09868 -4.13287 1.79374 1.81475 3.19707 3.26035 3.33702 3.37908 3.80655 4.25682 4.39312 4.90772 4.95185 4.99399 5.26156 5.26370 5.28644 5.32936 5.36656 5.41393 5.54546 5.57923 5.73758 5.82565 5.87477 5.91409 5.92470 5.96029 6.08730 6.21028 6.29345 6.37311 6.42260 6.45873 6.60358 6.85820 6.86437 6.97291 7.13615 7.41909 7.50074 7.63590 7.86984 8.19626 8.26825 8.84515 8.92774 9.51764 11.00638 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.006490 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.766963 B = 4313.432220 C = 6732.392117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.142 4.142 5 C 0.508 3.492 6 O -0.553 6.553 7 N -0.703 5.703 8 C 0.183 3.817 9 H 0.084 0.916 10 C 0.023 3.977 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.070 4.070 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.109 4.109 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.401 0.599 35 H 0.028 0.972 36 H 0.030 0.970 37 H 0.262 0.738 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 -5.826 -8.642 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.182 4.182 5 C 0.294 3.706 6 O -0.431 6.431 7 N -0.352 5.352 8 C 0.079 3.921 9 H 0.102 0.898 10 C -0.014 4.014 11 C -0.558 4.558 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.071 4.071 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.236 0.764 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.684 -5.154 -8.612 14.658 hybrid contribution 0.584 -0.531 1.033 1.300 sum -10.100 -5.685 -7.579 13.848 Atomic orbital electron populations 1.21758 0.95974 1.01236 1.01953 1.21555 0.95870 0.96995 1.01862 1.21338 0.93224 0.96074 1.03432 1.21690 0.97674 0.94818 1.04036 1.20619 0.82730 0.91243 0.75985 1.90646 1.55505 1.46559 1.50425 1.46017 1.06392 1.09770 1.73019 1.20202 0.99773 0.82419 0.89702 0.89816 1.19387 0.87531 0.98506 0.95966 1.21142 0.92550 1.48781 0.93344 0.92412 1.24986 0.95560 0.95240 0.98333 1.69959 0.97392 1.49617 1.36134 0.86596 0.77649 0.78382 0.85414 1.20669 1.21214 1.19853 1.20562 0.95949 0.93882 0.96740 1.20915 0.99658 0.99629 0.92428 1.21042 1.00841 0.96324 0.96141 1.20992 1.01349 0.94261 0.98768 1.21039 1.00711 0.99246 0.93104 1.21021 0.99479 0.96088 0.96130 0.92710 0.92766 0.93010 0.92142 0.92032 0.91321 0.91457 0.89411 0.89134 0.76397 0.95359 0.95153 0.92866 0.86540 0.86754 0.86860 0.86629 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.15 0.37 -1.00 16 2 C -0.13 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.10 -1.28 4.50 -26.73 -0.12 -1.40 16 4 C -0.14 -1.83 5.70 -27.89 -0.16 -1.99 16 5 C 0.51 8.93 7.73 -10.99 -0.08 8.84 16 6 O -0.55 -11.68 15.68 5.55 0.09 -11.59 16 7 N -0.70 -12.71 4.09 -54.93 -0.22 -12.93 16 8 C 0.18 3.78 2.11 -69.08 -0.15 3.63 16 9 H 0.08 1.90 7.49 -51.93 -0.39 1.51 16 10 C 0.02 0.56 4.47 -27.88 -0.12 0.44 16 11 C -0.52 -13.78 8.85 -34.44 -0.30 -14.08 16 12 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 15 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.07 -1.32 4.86 -104.63 -0.51 -1.83 16 20 C -0.11 -1.84 9.32 -39.58 -0.37 -2.21 16 21 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 22 C -0.14 -1.95 10.05 -39.58 -0.40 -2.35 16 23 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 24 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 31 H 0.07 0.90 8.10 -51.92 -0.42 0.48 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 34 H 0.40 6.67 8.57 -40.82 -0.35 6.32 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.12 1.85 7.73 -52.48 -0.41 1.45 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -30.77 354.10 -9.39 -40.16 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.02 Total: 6.50 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -3.28 Total: -18.64 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.51 Total: -37.72 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.77 -9.39 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153201922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.228 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds