Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47300 * 2 1 4 4 C 1.52998 * 109.47566 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47366 * 179.97438 * 4 3 2 6 6 O 1.21284 * 120.00284 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99918 * 179.72368 * 5 4 3 8 8 C 1.46503 * 120.00040 * 175.34598 * 7 5 4 9 9 H 1.09003 * 109.46946 * 38.57415 * 8 7 5 10 10 C 1.53001 * 109.47048 * 158.57143 * 8 7 5 11 11 C 1.50700 * 109.47288 * 294.53293 * 10 8 7 12 12 H 1.08001 * 119.99898 * 354.98990 * 11 10 8 13 13 C 1.37878 * 120.00052 * 174.98463 * 11 10 8 14 14 N 1.31513 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99995 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47090 * 90.00455 * 15 13 11 17 17 H 1.48504 * 109.47083 * 210.00342 * 15 13 11 18 18 H 1.48499 * 109.47308 * 330.00544 * 15 13 11 19 19 C 1.50696 * 109.47126 * 278.57265 * 8 7 5 20 20 C 1.38232 * 119.99904 * 319.72733 * 19 8 7 21 21 C 1.38234 * 120.00184 * 179.78908 * 20 19 8 22 22 C 1.38240 * 119.99558 * 0.43727 * 21 20 19 23 23 C 1.38233 * 120.00117 * 359.81385 * 22 21 20 24 24 C 1.38233 * 120.00042 * 140.00169 * 19 8 7 25 25 H 1.08997 * 109.47665 * 300.00282 * 1 2 3 26 26 H 1.09008 * 109.47083 * 60.00203 * 1 2 3 27 27 H 1.08995 * 109.47252 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47665 * 239.99717 * 2 1 3 29 29 H 1.09002 * 109.47461 * 119.99598 * 2 1 3 30 30 H 1.08995 * 109.47500 * 59.99265 * 3 2 1 31 31 H 1.09008 * 109.46887 * 299.99918 * 3 2 1 32 32 H 1.08995 * 109.47479 * 59.99047 * 4 3 2 33 33 H 1.09008 * 109.46783 * 299.99776 * 4 3 2 34 34 H 0.96998 * 120.00364 * 355.33878 * 7 5 4 35 35 H 1.09000 * 109.47246 * 54.53130 * 10 8 7 36 36 H 1.09004 * 109.46725 * 174.53252 * 10 8 7 37 37 H 0.97000 * 120.00045 * 179.97438 * 14 13 11 38 38 H 1.08003 * 120.00180 * 359.97438 * 20 19 8 39 39 H 1.07997 * 120.00685 * 180.27366 * 21 20 19 40 40 H 1.08001 * 119.99928 * 179.83720 * 22 21 20 41 41 H 1.08004 * 120.00270 * 179.97438 * 23 22 21 42 42 H 1.08004 * 120.00151 * 359.97291 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8633 -0.0013 6 8 3.2842 3.7852 -0.0017 7 7 5.3973 3.1096 0.0037 8 6 5.8869 4.4865 -0.0998 9 1 5.2390 5.1468 0.4768 10 6 7.3127 4.5635 0.4498 11 6 7.2983 4.2661 1.9271 12 1 6.3587 4.1242 2.4403 13 6 8.4848 4.1750 2.6236 14 7 9.6290 4.3482 1.9987 15 14 8.4670 3.8071 4.4549 16 1 8.5186 2.3379 4.6651 17 1 9.6456 4.4409 5.0986 18 1 7.2227 4.3498 5.0568 19 6 5.8818 4.9141 -1.5448 20 6 6.2779 4.0281 -2.5292 21 6 6.2691 4.4189 -3.8551 22 6 5.8727 5.6987 -4.1958 23 6 5.4816 6.5864 -3.2110 24 6 5.4864 6.1942 -1.8855 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.9330 0.9288 -0.8907 33 1 3.9336 0.9286 0.8892 34 1 6.0269 2.3752 0.0760 35 1 7.9393 3.8330 -0.0618 36 1 7.7122 5.5641 0.2845 37 1 10.4637 4.2846 2.4887 38 1 6.5914 3.0296 -2.2626 39 1 6.5743 3.7253 -4.6246 40 1 5.8683 6.0049 -5.2315 41 1 5.1723 7.5864 -3.4771 42 1 5.1807 6.8877 -1.1160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153201922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -63.847015 kcal Electronic energy + Delta-G solvation = -21009.983538 eV Core-core repulsion = 17952.741155 eV Total energy + Delta-G solvation = -3057.242383 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06252 -39.74914 -36.95040 -36.07790 -34.71703 -32.76736 -31.72169 -31.09033 -30.46266 -26.92709 -25.33017 -23.79343 -23.35958 -22.15432 -21.42656 -21.02490 -18.69646 -17.84608 -17.66921 -17.06713 -16.75657 -16.41123 -16.12736 -15.40577 -15.37416 -14.74972 -14.51882 -14.47272 -14.19193 -14.13510 -13.68955 -13.60413 -13.43260 -13.19033 -12.93795 -12.64386 -12.49648 -12.19629 -12.13943 -12.03855 -11.88409 -11.83072 -11.56490 -11.42879 -11.33907 -10.78763 -10.56281 -9.93799 -9.75919 -9.51895 -8.21191 -6.31712 0.50837 0.55362 1.38794 1.40951 1.51266 1.79771 2.39425 2.42361 2.97655 3.12925 3.85601 3.97881 4.01913 4.03588 4.09482 4.20794 4.31817 4.38199 4.48220 4.50254 4.65346 4.67481 4.74445 4.78747 4.84141 4.97051 5.02627 5.12406 5.13548 5.19822 5.28779 5.31457 5.41254 5.42715 5.52312 5.60725 5.62532 5.64091 5.76935 5.92359 6.15454 6.19994 6.77099 6.80842 7.37137 7.43082 8.89495 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.009513 B = 0.006490 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.766963 B = 4313.432220 C = 6732.392117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.132 4.132 5 C 0.503 3.497 6 O -0.594 6.594 7 N -0.700 5.700 8 C 0.199 3.801 9 H 0.051 0.949 10 C 0.038 3.962 11 C -0.530 4.530 12 H 0.051 0.949 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.135 4.135 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.409 0.591 35 H 0.016 0.984 36 H -0.001 1.001 37 H 0.264 0.736 38 H 0.122 0.878 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -7.519 -9.841 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.172 4.172 5 C 0.291 3.709 6 O -0.475 6.475 7 N -0.349 5.349 8 C 0.093 3.907 9 H 0.070 0.930 10 C 0.001 3.999 11 C -0.568 4.568 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.565 5.565 15 Si 0.782 3.218 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.099 4.099 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.154 4.154 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.245 0.755 35 H 0.034 0.966 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.161 0.839 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.100 -6.872 -9.814 16.332 hybrid contribution 0.705 0.062 1.337 1.512 sum -10.395 -6.810 -8.477 15.043 Atomic orbital electron populations 1.21774 0.95553 1.02153 1.01594 1.21519 0.96236 0.94894 1.02992 1.21309 0.92879 0.97795 1.01783 1.21741 0.97816 0.91400 1.06220 1.21501 0.81850 0.92969 0.74549 1.90624 1.56298 1.48397 1.52202 1.45954 1.07098 1.08832 1.73052 1.19675 0.96605 0.83471 0.90928 0.93038 1.19125 0.89596 0.96106 0.95121 1.21378 0.92350 1.48562 0.94555 0.93056 1.25770 0.95138 0.94983 1.02733 1.70068 0.97993 1.50546 1.37910 0.85571 0.77443 0.78786 0.79971 1.19240 1.20918 1.19865 1.20456 0.98509 0.95088 0.95831 1.21083 0.99964 0.99658 0.93231 1.21454 0.99619 0.97305 0.95786 1.21477 0.99276 0.93614 1.00370 1.21383 0.99904 1.00850 0.92042 1.21174 1.00786 0.95855 0.97586 0.93298 0.93011 0.91415 0.90699 0.91125 0.93337 0.92901 0.86549 0.87284 0.75513 0.96585 0.98267 0.92665 0.85986 0.83445 0.83046 0.83902 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.80 16 2 C -0.12 -2.06 5.93 30.59 0.18 -1.88 16 3 C -0.10 -2.40 4.50 30.59 0.14 -2.26 16 4 C -0.13 -3.21 5.70 29.85 0.17 -3.04 16 5 C 0.50 17.90 7.73 87.66 0.68 18.58 16 6 O -0.59 -26.09 15.68 -3.04 -0.05 -26.13 16 7 N -0.70 -25.94 4.09 -446.09 -1.82 -27.77 16 8 C 0.20 8.64 2.11 44.24 0.09 8.73 16 9 H 0.05 2.53 7.49 -2.39 -0.02 2.51 16 10 C 0.04 1.92 4.47 29.85 0.13 2.06 16 11 C -0.53 -28.99 8.85 25.60 0.23 -28.76 16 12 H 0.05 2.82 7.75 -2.91 -0.02 2.79 16 13 C 0.01 0.69 5.46 84.66 0.46 1.16 16 14 N -0.93 -53.88 13.29 21.45 0.28 -53.60 16 15 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 C -0.10 -3.81 4.86 -19.87 -0.10 -3.90 16 20 C -0.12 -4.07 9.32 22.27 0.21 -3.86 16 21 C -0.12 -3.41 10.05 22.27 0.22 -3.18 16 22 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 23 C -0.12 -3.63 10.05 22.27 0.22 -3.41 16 24 C -0.14 -4.96 9.67 22.27 0.22 -4.75 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.34 8.10 -2.39 -0.02 1.33 16 31 H 0.05 1.41 8.10 -2.38 -0.02 1.39 16 32 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.41 13.70 8.57 -92.71 -0.79 12.91 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.12 3.83 7.73 -2.91 -0.02 3.80 16 39 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.11 4.06 8.04 -2.91 -0.02 4.03 16 Total: -1.00 -68.82 354.10 4.42 -64.40 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.19 Total: 27.21 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 3.79 Total: -29.45 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -1.54 Total: -81.37 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -68.82 4.42 -64.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153201922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.552 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds