Wall clock time and date at job start Mon Mar 30 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47267 * 2 1 4 4 C 1.53000 * 109.47267 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47005 * 180.02562 * 4 3 2 6 6 O 1.21290 * 120.00067 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00181 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00556 * 180.02562 * 7 5 4 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.09003 * 109.46827 * 299.99387 * 1 2 3 26 26 H 1.08995 * 109.47370 * 59.99381 * 1 2 3 27 27 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46827 * 240.00613 * 2 1 3 29 29 H 1.08995 * 109.47370 * 120.00619 * 2 1 3 30 30 H 1.09003 * 109.46697 * 60.00533 * 3 2 1 31 31 H 1.09000 * 109.47045 * 300.00834 * 3 2 1 32 32 H 1.09003 * 109.46827 * 60.00613 * 4 3 2 33 33 H 1.08995 * 109.47370 * 300.00619 * 4 3 2 34 34 H 0.97002 * 120.00072 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 36 36 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 37 37 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 38 38 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 39 39 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 40 40 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 41 41 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 42 42 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2841 3.7852 0.0013 7 7 5.3973 3.1096 -0.0009 8 6 5.8857 4.4908 0.0002 9 1 5.2126 5.1147 -0.5879 10 6 7.2877 4.5366 -0.6106 11 6 7.2161 4.1402 -2.0628 12 1 6.2656 3.8819 -2.5059 13 6 8.3632 4.1134 -2.8275 14 7 9.5205 4.4283 -2.2881 15 14 8.2733 3.6295 -4.6294 16 1 6.8656 3.3240 -4.9903 17 1 8.7666 4.7512 -5.4684 18 1 9.1161 2.4293 -4.8624 19 6 5.9377 5.0041 1.4162 20 6 6.3659 4.1754 2.4363 21 6 6.4178 4.6476 3.7345 22 6 6.0327 5.9456 4.0139 23 6 5.5995 6.7725 2.9944 24 6 5.5518 6.3017 1.6956 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9338 0.9285 0.8890 34 1 6.0277 2.3724 -0.0016 35 1 7.9394 3.8448 -0.0769 36 1 7.6867 5.5476 -0.5293 37 1 10.3275 4.4091 -2.8259 38 1 6.6628 3.1601 2.2188 39 1 6.7567 4.0016 4.5310 40 1 6.0707 6.3136 5.0285 41 1 5.2991 7.7867 3.2125 42 1 5.2134 6.9478 0.8991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153202029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:31 Heat of formation + Delta-G solvation = -47.444461 kcal Electronic energy + Delta-G solvation = -20992.748840 eV Core-core repulsion = 17936.217725 eV Total energy + Delta-G solvation = -3056.531115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62707 -38.44131 -35.59620 -34.85873 -32.72906 -31.37952 -30.48645 -30.02887 -28.71984 -25.31549 -24.10168 -22.28241 -21.94509 -21.18216 -20.05766 -19.60167 -16.95973 -16.35232 -16.15715 -15.81423 -15.41345 -14.83773 -14.53072 -14.23620 -14.09771 -13.68324 -13.25269 -13.09835 -12.93046 -12.56769 -12.35662 -12.23315 -12.10959 -11.61111 -11.27289 -11.15201 -11.12456 -11.00708 -10.87229 -10.73583 -10.58089 -10.54401 -10.45122 -9.77545 -9.34688 -9.21590 -8.53658 -8.46118 -8.37074 -8.16563 -6.09705 -4.12992 1.79513 1.81475 3.19951 3.25524 3.34194 3.38496 3.80114 4.25736 4.39519 4.90884 4.95483 4.99492 5.26159 5.27040 5.28516 5.33169 5.36943 5.40843 5.54765 5.57706 5.73857 5.82752 5.87490 5.91723 5.92340 5.95629 6.08911 6.20846 6.29628 6.37556 6.42503 6.45884 6.60095 6.85780 6.86582 6.96487 7.13441 7.41867 7.49861 7.63898 7.87338 8.18828 8.26579 8.84182 8.93251 9.52095 11.00905 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.009227 B = 0.006625 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.783270 B = 4225.495771 C = 6753.697551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.142 4.142 5 C 0.508 3.492 6 O -0.553 6.553 7 N -0.702 5.702 8 C 0.183 3.817 9 H 0.085 0.915 10 C 0.023 3.977 11 C -0.519 4.519 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.070 4.070 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.400 0.600 35 H 0.024 0.976 36 H 0.033 0.967 37 H 0.261 0.739 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 -5.622 9.096 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.182 4.182 5 C 0.294 3.706 6 O -0.432 6.432 7 N -0.351 5.351 8 C 0.079 3.921 9 H 0.104 0.896 10 C -0.014 4.014 11 C -0.557 4.557 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.071 4.071 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.235 0.765 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.346 -4.939 9.038 14.598 hybrid contribution 0.560 -0.567 -1.004 1.282 sum -9.786 -5.506 8.034 13.807 Atomic orbital electron populations 1.21760 0.95975 1.01234 1.01952 1.21557 0.95871 0.96995 1.01863 1.21340 0.93222 0.96078 1.03434 1.21687 0.97676 0.94789 1.04047 1.20617 0.82708 0.91261 0.75981 1.90649 1.55471 1.46555 1.50500 1.46009 1.06384 1.09275 1.73456 1.20224 0.99850 0.81855 0.90193 0.89649 1.19392 0.87873 0.98607 0.95522 1.21179 0.93766 1.46066 0.94716 0.92351 1.24993 0.95451 0.95276 0.98452 1.69973 0.98407 1.48474 1.36237 0.86544 0.78119 0.78170 0.85237 1.19735 1.20982 1.21018 1.20565 0.95920 0.93996 0.96615 1.20905 0.99662 0.99691 0.92413 1.21042 1.00848 0.95930 0.96515 1.20992 1.01262 0.94468 0.98667 1.21040 1.00583 0.99366 0.93091 1.21021 0.99536 0.95657 0.96517 0.92777 0.92698 0.93010 0.92023 0.92147 0.91459 0.91312 0.89062 0.89456 0.76524 0.95759 0.94841 0.92931 0.86581 0.86756 0.86858 0.86626 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.13 -1.23 5.93 -26.73 -0.16 -1.39 16 3 C -0.10 -1.28 4.50 -26.73 -0.12 -1.40 16 4 C -0.14 -1.83 5.70 -27.88 -0.16 -1.99 16 5 C 0.51 8.93 7.79 -10.99 -0.09 8.85 16 6 O -0.55 -11.70 15.65 5.55 0.09 -11.61 16 7 N -0.70 -12.65 4.02 -54.93 -0.22 -12.87 16 8 C 0.18 3.77 2.12 -69.08 -0.15 3.62 16 9 H 0.09 1.94 7.44 -51.92 -0.39 1.55 16 10 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 11 C -0.52 -13.76 8.84 -34.44 -0.30 -14.06 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 15 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.07 -1.31 4.91 -104.63 -0.51 -1.83 16 20 C -0.11 -1.84 9.33 -39.58 -0.37 -2.21 16 21 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 22 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 24 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.40 6.55 8.60 -40.82 -0.35 6.20 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.12 1.83 7.71 -52.49 -0.40 1.42 16 39 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -30.92 354.09 -9.39 -40.31 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.02 Total: 6.37 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -3.29 Total: -18.66 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.52 Total: -37.73 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.92 -9.39 -40.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153202029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.139 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds