Wall clock time and date at job start Mon Mar 30 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47267 * 2 1 4 4 C 1.53000 * 109.47267 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47005 * 180.02562 * 4 3 2 6 6 O 1.21290 * 120.00067 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00181 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00556 * 180.02562 * 7 5 4 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.09003 * 109.46827 * 299.99387 * 1 2 3 26 26 H 1.08995 * 109.47370 * 59.99381 * 1 2 3 27 27 H 1.09006 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46827 * 240.00613 * 2 1 3 29 29 H 1.08995 * 109.47370 * 120.00619 * 2 1 3 30 30 H 1.09003 * 109.46697 * 60.00533 * 3 2 1 31 31 H 1.09000 * 109.47045 * 300.00834 * 3 2 1 32 32 H 1.09003 * 109.46827 * 60.00613 * 4 3 2 33 33 H 1.08995 * 109.47370 * 300.00619 * 4 3 2 34 34 H 0.97002 * 120.00072 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 36 36 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 37 37 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 38 38 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 39 39 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 40 40 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 41 41 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 42 42 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2841 3.7852 0.0013 7 7 5.3973 3.1096 -0.0009 8 6 5.8857 4.4908 0.0002 9 1 5.2126 5.1147 -0.5879 10 6 7.2877 4.5366 -0.6106 11 6 7.2161 4.1402 -2.0628 12 1 6.2656 3.8819 -2.5059 13 6 8.3632 4.1134 -2.8275 14 7 9.5205 4.4283 -2.2881 15 14 8.2733 3.6295 -4.6294 16 1 6.8656 3.3240 -4.9903 17 1 8.7666 4.7512 -5.4684 18 1 9.1161 2.4293 -4.8624 19 6 5.9377 5.0041 1.4162 20 6 6.3659 4.1754 2.4363 21 6 6.4178 4.6476 3.7345 22 6 6.0327 5.9456 4.0139 23 6 5.5995 6.7725 2.9944 24 6 5.5518 6.3017 1.6956 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9338 0.9285 0.8890 34 1 6.0277 2.3724 -0.0016 35 1 7.9394 3.8448 -0.0769 36 1 7.6867 5.5476 -0.5293 37 1 10.3275 4.4091 -2.8259 38 1 6.6628 3.1601 2.2188 39 1 6.7567 4.0016 4.5310 40 1 6.0707 6.3136 5.0285 41 1 5.2991 7.7867 3.2125 42 1 5.2134 6.9478 0.8991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153202029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:31 Heat of formation + Delta-G solvation = -64.016594 kcal Electronic energy + Delta-G solvation = -20993.467462 eV Core-core repulsion = 17936.217725 eV Total energy + Delta-G solvation = -3057.249736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06129 -39.75481 -36.95015 -36.07731 -34.71915 -32.77075 -31.72321 -31.08748 -30.46181 -26.93136 -25.33271 -23.79244 -23.36330 -22.15062 -21.42531 -21.04313 -18.70709 -17.86585 -17.66260 -17.03408 -16.76875 -16.41733 -16.12144 -15.40077 -15.37237 -14.75498 -14.51712 -14.47197 -14.19257 -14.16724 -13.68740 -13.60141 -13.45097 -13.19133 -12.92967 -12.63942 -12.48373 -12.19136 -12.13476 -12.03673 -11.88127 -11.83098 -11.59511 -11.42888 -11.31708 -10.78767 -10.56589 -9.94296 -9.75919 -9.52017 -8.21301 -6.31620 0.50991 0.55382 1.37891 1.40654 1.52148 1.79942 2.39318 2.42004 2.97650 3.13093 3.86139 3.97804 4.01330 4.03403 4.09447 4.20686 4.31793 4.37756 4.48360 4.50202 4.65173 4.67445 4.74816 4.78458 4.84129 4.97105 5.02609 5.12409 5.13483 5.19746 5.28683 5.31496 5.41245 5.42743 5.52275 5.60751 5.62378 5.63944 5.77218 5.92149 6.15482 6.20053 6.76440 6.81240 7.37264 7.43060 8.89707 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.009227 B = 0.006625 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.783270 B = 4225.495771 C = 6753.697551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.132 4.132 5 C 0.502 3.498 6 O -0.594 6.594 7 N -0.699 5.699 8 C 0.198 3.802 9 H 0.053 0.947 10 C 0.038 3.962 11 C -0.529 4.529 12 H 0.053 0.947 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.958 3.042 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.097 4.097 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.136 4.136 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.409 0.591 35 H 0.013 0.987 36 H 0.001 0.999 37 H 0.264 0.736 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.143 0.857 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 -7.278 10.363 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.172 4.172 5 C 0.291 3.709 6 O -0.476 6.476 7 N -0.348 5.348 8 C 0.093 3.907 9 H 0.071 0.929 10 C 0.000 4.000 11 C -0.567 4.567 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.783 3.217 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.154 4.154 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.245 0.755 35 H 0.031 0.969 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.161 0.839 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.707 -6.620 10.308 16.270 hybrid contribution 0.667 0.015 -1.328 1.486 sum -10.041 -6.605 8.980 15.003 Atomic orbital electron populations 1.21776 0.95555 1.02154 1.01592 1.21520 0.96237 0.94894 1.02992 1.21311 0.92893 0.97799 1.01781 1.21738 0.97809 0.91389 1.06226 1.21501 0.81863 0.92979 0.74568 1.90627 1.56282 1.48389 1.52278 1.45939 1.07084 1.08369 1.73441 1.19687 0.96672 0.83069 0.91261 0.92897 1.19131 0.89846 0.96128 0.94855 1.21421 0.93532 1.45799 0.95928 0.92910 1.25789 0.95054 0.95198 1.02746 1.70081 0.99093 1.49503 1.37939 0.85508 0.78254 0.78016 0.79901 1.19341 1.20859 1.19906 1.20461 0.98476 0.95063 0.95867 1.21083 0.99903 0.99892 0.93075 1.21457 0.99663 0.96757 0.96280 1.21477 0.99206 0.93960 1.00122 1.21382 0.99821 1.00897 0.92086 1.21172 1.00846 0.95516 0.97910 0.92987 0.93325 0.91411 0.91176 0.90644 0.92826 0.93412 0.87360 0.86454 0.75519 0.96866 0.98095 0.92700 0.85918 0.83425 0.83054 0.83925 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.91 71.98 0.71 -1.81 16 2 C -0.12 -2.07 5.93 30.59 0.18 -1.89 16 3 C -0.10 -2.41 4.50 30.59 0.14 -2.27 16 4 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 5 C 0.50 17.89 7.79 87.66 0.68 18.57 16 6 O -0.59 -26.13 15.65 -3.06 -0.05 -26.17 16 7 N -0.70 -25.76 4.02 -446.09 -1.79 -27.56 16 8 C 0.20 8.62 2.12 44.24 0.09 8.72 16 9 H 0.05 2.60 7.44 -2.38 -0.02 2.58 16 10 C 0.04 1.92 4.50 29.85 0.13 2.05 16 11 C -0.53 -28.88 8.84 25.60 0.23 -28.66 16 12 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 13 C 0.01 0.60 5.46 84.66 0.46 1.06 16 14 N -0.93 -54.15 13.29 21.45 0.28 -53.86 16 15 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 C -0.10 -3.80 4.91 -19.87 -0.10 -3.90 16 20 C -0.12 -4.06 9.33 22.27 0.21 -3.85 16 21 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 22 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 23 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 24 C -0.14 -4.99 9.67 22.27 0.22 -4.77 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 31 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 32 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.12 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.41 13.44 8.60 -92.71 -0.80 12.65 16 35 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 38 H 0.12 3.80 7.71 -2.91 -0.02 3.78 16 39 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 41 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 42 H 0.11 4.06 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -69.18 354.09 4.45 -64.73 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.18 Total: 26.96 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 3.80 Total: -29.53 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -1.51 Total: -81.42 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -69.18 4.45 -64.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153202029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.710 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds