Wall clock time and date at job start Mon Mar 30 2020 02:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99928 * 2 1 4 4 C 1.52994 * 109.47119 * 125.00034 * 3 2 1 5 5 C 1.53001 * 109.47372 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47584 * 179.97438 * 5 4 3 7 7 C 1.39664 * 120.00039 * 179.97438 * 6 5 4 8 8 C 1.38973 * 120.04703 * 359.97438 * 7 6 5 9 9 C 1.38116 * 120.03003 * 180.02562 * 8 7 6 10 10 C 1.38216 * 120.13578 * 359.74695 * 9 8 7 11 11 C 1.38779 * 120.08401 * 0.51068 * 10 9 8 12 12 O 1.35897 * 120.00949 * 179.76812 * 11 10 9 13 13 C 1.42898 * 117.00481 * 359.71829 * 12 11 10 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.38609 * 119.96517 * 359.48769 * 11 10 9 24 24 H 1.07997 * 120.00312 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99651 * 179.97438 * 1 2 3 26 26 H 1.07998 * 120.00606 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47149 * 4.99911 * 3 2 1 28 28 H 1.08997 * 109.47381 * 244.99991 * 3 2 1 29 29 H 1.08997 * 109.47173 * 60.00111 * 4 3 2 30 30 H 1.09008 * 109.47399 * 300.00007 * 4 3 2 31 31 H 1.09006 * 109.47286 * 59.99638 * 5 4 3 32 32 H 1.09008 * 109.46600 * 300.00173 * 5 4 3 33 33 H 0.97000 * 119.99514 * 359.97438 * 6 5 4 34 34 H 1.07996 * 119.98339 * 0.02562 * 8 7 6 35 35 H 1.08007 * 119.92769 * 179.97438 * 9 8 7 36 36 H 1.07991 * 119.95689 * 180.26971 * 10 9 8 37 37 H 1.09002 * 109.47259 * 300.00417 * 13 12 11 38 38 H 1.09001 * 109.47074 * 60.00439 * 13 12 11 39 39 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 42 42 H 1.08006 * 120.06150 * 180.23058 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6584 1.1820 6 7 4.7294 2.6855 2.3137 7 6 5.5426 3.8015 2.5228 8 6 5.4710 4.8867 1.6576 9 6 6.2757 5.9900 1.8644 10 6 7.1501 6.0203 2.9344 11 6 7.2298 4.9374 3.7986 12 8 8.0934 4.9669 4.8474 13 6 8.8931 6.1417 4.9965 14 6 9.7965 5.9916 6.2222 15 6 10.6394 7.2308 6.3799 16 1 10.5404 8.0443 5.6765 17 6 11.5363 7.3265 7.4227 18 7 11.6565 6.3360 8.2795 19 14 12.5816 8.8622 7.6177 20 1 12.2589 9.8218 6.5313 21 1 12.2978 9.4905 8.9330 22 1 14.0186 8.4955 7.5441 23 6 6.4239 3.8282 3.5947 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6213 1.4027 -0.9313 29 1 3.7400 0.5066 1.0920 30 1 2.4772 1.2356 2.1131 31 1 3.0944 3.4847 1.2718 32 1 4.3573 2.7563 0.2505 33 1 4.7802 1.9283 2.9179 34 1 4.7857 4.8672 0.8231 35 1 6.2189 6.8322 1.1906 36 1 7.7749 6.8862 3.0958 37 1 9.5080 6.2781 4.1069 38 1 8.2449 7.0084 5.1265 39 1 9.1819 5.8550 7.1120 40 1 10.4447 5.1250 6.0919 41 1 12.2872 6.4034 9.0134 42 1 6.4820 2.9861 4.2685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157159178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:21 Heat of formation + Delta-G solvation = -16.359964 kcal Electronic energy + Delta-G solvation = -19473.925341 eV Core-core repulsion = 16418.742151 eV Total energy + Delta-G solvation = -3055.183190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73197 -37.99234 -36.61329 -34.79968 -33.32065 -31.80315 -30.74091 -29.31929 -28.36577 -25.81569 -24.80811 -22.87716 -22.11118 -21.17063 -20.41044 -20.09501 -17.92982 -16.36601 -16.30208 -16.08605 -15.57175 -15.34242 -15.22813 -15.07470 -14.61516 -14.20767 -13.85122 -13.48446 -13.31567 -12.72912 -12.63946 -12.31468 -12.25103 -12.12485 -11.60473 -11.48316 -11.30100 -11.17849 -11.12676 -10.88864 -10.70255 -10.41325 -9.96796 -9.78292 -9.69050 -9.61196 -9.24895 -8.42819 -7.91269 -7.30592 -6.07841 -4.12076 1.74638 1.83848 1.90487 3.25707 3.28431 3.35634 3.39619 4.03853 4.15361 4.31592 4.44855 4.50696 4.74842 4.84503 4.93997 5.12459 5.17003 5.26064 5.28657 5.37497 5.41985 5.47499 5.57978 5.63656 5.72087 5.77815 5.81279 6.11317 6.12486 6.15053 6.19365 6.32439 6.43862 6.65617 6.70116 6.78426 6.92285 7.40890 7.55385 7.68323 7.69582 7.86683 8.14985 8.27937 8.93888 9.52087 11.03821 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.057138 B = 0.002204 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.927042 B =12703.059566 C =13117.063223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.092 4.092 4 C -0.127 4.127 5 C 0.128 3.872 6 N -0.751 5.751 7 C 0.246 3.754 8 C -0.244 4.244 9 C -0.037 4.037 10 C -0.264 4.264 11 C 0.187 3.813 12 O -0.316 6.316 13 C 0.066 3.934 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.238 4.238 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.398 0.602 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.262 0.738 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.482 -9.576 -17.024 27.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.172 4.172 3 C -0.129 4.129 4 C -0.165 4.165 5 C 0.003 3.997 6 N -0.381 5.381 7 C 0.143 3.857 8 C -0.267 4.267 9 C -0.056 4.056 10 C -0.285 4.285 11 C 0.139 3.861 12 O -0.229 6.229 13 C -0.008 4.008 14 C -0.013 4.013 15 C -0.563 4.563 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.262 4.262 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.233 0.767 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.453 -9.733 -16.873 27.529 hybrid contribution 0.649 0.665 0.317 0.982 sum -18.804 -9.068 -16.556 26.645 Atomic orbital electron populations 1.23884 0.96001 1.01920 1.01360 1.22950 0.96045 0.98472 0.99715 1.20675 0.98064 0.95677 0.98511 1.21713 0.98210 0.97367 0.99183 1.21286 0.91505 0.97401 0.89509 1.44557 1.43215 1.18355 1.32018 1.17359 0.88968 0.86930 0.92447 1.20384 1.07412 0.95412 1.03487 1.20621 0.93040 0.96558 0.95381 1.21150 1.06902 1.00484 0.99948 1.18822 0.88138 0.92710 0.86397 1.86144 1.49733 1.43406 1.43627 1.23311 0.91928 0.84060 1.01476 1.19136 0.93304 0.98173 0.90697 1.21026 1.21397 1.01877 1.12010 0.92279 1.24997 0.97036 0.96631 0.95593 1.69993 1.36244 1.31401 1.15170 0.86429 0.80043 0.82824 0.78080 1.19631 1.20870 1.20863 1.19670 1.03512 1.00393 1.02599 0.88549 0.88532 0.87366 0.91173 0.90626 0.91120 0.91163 0.92396 0.92347 0.76729 0.86728 0.86366 0.85578 0.93092 0.93089 0.95424 0.95416 0.92806 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 14.32 29.01 0.42 -0.66 16 2 C -0.15 -0.88 9.52 -36.03 -0.34 -1.22 16 3 C -0.09 -0.50 5.66 -27.88 -0.16 -0.66 16 4 C -0.13 -0.77 5.31 -26.73 -0.14 -0.91 16 5 C 0.13 1.00 4.91 -4.04 -0.02 0.98 16 6 N -0.75 -7.79 5.73 -58.65 -0.34 -8.12 16 7 C 0.25 3.37 6.65 -83.81 -0.56 2.81 16 8 C -0.24 -3.23 9.31 -39.35 -0.37 -3.59 16 9 C -0.04 -0.52 10.03 -39.63 -0.40 -0.92 16 10 C -0.26 -4.41 9.04 -39.39 -0.36 -4.76 16 11 C 0.19 3.46 6.68 -39.24 -0.26 3.20 16 12 O -0.32 -6.79 10.13 -19.42 -0.20 -6.99 16 13 C 0.07 1.47 4.68 37.16 0.17 1.64 16 14 C 0.02 0.64 5.34 -27.89 -0.15 0.49 16 15 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 19 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.24 -3.84 9.83 -39.24 -0.39 -4.23 16 24 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 25 H 0.10 0.46 8.06 -52.49 -0.42 0.03 16 26 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 27 H 0.07 0.37 7.79 -51.93 -0.40 -0.04 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.06 0.46 7.95 -51.93 -0.41 0.05 16 32 H 0.06 0.46 7.95 -51.92 -0.41 0.05 16 33 H 0.40 3.64 8.48 -40.82 -0.35 3.29 16 34 H 0.11 1.25 6.73 -52.49 -0.35 0.90 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 36 H 0.13 2.08 6.29 -52.49 -0.33 1.75 16 37 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 38 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -31.01 353.20 -9.27 -40.28 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.81 Total: 0.44 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -2.96 Total: -21.39 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.40 Total: -34.12 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.20 Total: -6.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.01 -9.27 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157159178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.919 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds