Wall clock time and date at job start Mon Mar 30 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47015 * 2 1 4 4 C 1.52996 * 109.46779 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47119 * 299.99763 * 3 2 1 6 6 C 1.52996 * 109.47361 * 300.00134 * 5 3 2 7 7 C 1.50701 * 109.46882 * 60.00173 * 3 2 1 8 8 O 1.21287 * 119.99751 * 239.99975 * 7 3 2 9 9 N 1.34774 * 120.00193 * 59.99892 * 7 3 2 10 10 C 1.39239 * 119.99572 * 184.29294 * 9 7 3 11 11 C 1.39478 * 119.83629 * 324.70709 * 10 9 7 12 12 C 1.36378 * 120.17132 * 180.30153 * 11 10 9 13 13 C 1.40873 * 119.82588 * 359.48212 * 12 11 10 14 14 C 1.41146 * 120.16280 * 180.24921 * 13 12 11 15 15 H 1.08000 * 119.99961 * 215.01077 * 14 13 12 16 16 C 1.39909 * 120.00279 * 35.01628 * 14 13 12 17 17 N 1.30870 * 119.99341 * 355.54314 * 16 14 13 18 18 Si 1.86798 * 120.00071 * 175.54082 * 16 14 13 19 19 H 1.48501 * 109.47078 * 90.00233 * 18 16 14 20 20 H 1.48500 * 109.46848 * 210.00201 * 18 16 14 21 21 H 1.48496 * 109.47294 * 329.99800 * 18 16 14 22 22 C 1.40877 * 119.67156 * 0.51692 * 13 12 11 23 23 C 1.36377 * 119.82510 * 359.73364 * 22 13 12 24 24 H 1.09000 * 109.47194 * 299.99662 * 1 2 3 25 25 H 1.09001 * 109.46843 * 60.00370 * 1 2 3 26 26 H 1.08995 * 109.47040 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47318 * 240.00036 * 2 1 3 28 28 H 1.09001 * 109.46843 * 119.99630 * 2 1 3 29 29 H 1.08993 * 109.47442 * 299.99997 * 4 3 2 30 30 H 1.09000 * 109.47011 * 60.00595 * 4 3 2 31 31 H 1.09003 * 109.47103 * 179.97438 * 4 3 2 32 32 H 1.09007 * 109.46933 * 60.00024 * 5 3 2 33 33 H 1.09001 * 109.47429 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.46871 * 60.00111 * 6 5 3 35 35 H 1.09007 * 109.47175 * 180.02562 * 6 5 3 36 36 H 1.08999 * 109.47191 * 300.00107 * 6 5 3 37 37 H 0.96998 * 120.00149 * 4.28691 * 9 7 3 38 38 H 1.07999 * 119.91412 * 0.02562 * 11 10 9 39 39 H 1.07992 * 120.08817 * 179.69924 * 12 11 10 40 40 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 41 41 H 1.07990 * 120.08259 * 179.71129 * 22 13 12 42 42 H 1.07995 * 119.90948 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 6 1.5301 2.1638 -1.2492 6 6 2.0401 1.4425 -2.4984 7 6 1.5377 2.1529 1.2305 8 8 0.8404 3.1390 1.1192 9 7 1.8633 1.6924 2.4546 10 6 1.3271 2.2942 3.5900 11 6 1.1067 3.6714 3.6070 12 6 0.5876 4.2688 4.7177 13 6 0.2637 3.4896 5.8457 14 6 -0.2788 4.0998 6.9971 15 1 -0.0240 3.7253 7.9775 16 6 -1.1466 5.1896 6.8682 17 7 -1.3869 5.6984 5.6867 18 14 -1.9622 5.9182 8.3826 19 1 -1.0993 6.9893 8.9426 20 1 -3.2806 6.4898 8.0081 21 1 -2.1551 4.8548 9.4010 22 6 0.4893 2.0992 5.8210 23 6 1.0138 1.5169 4.7049 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9330 0.9288 0.8908 30 1 3.9337 0.9286 -0.8892 31 1 3.9334 2.4702 0.0002 32 1 0.4400 2.1637 -1.2492 33 1 1.8930 3.1916 -1.2490 34 1 1.6767 0.4149 -2.4984 35 1 1.6771 1.9567 -3.3885 36 1 3.1301 1.4425 -2.4984 37 1 2.4710 0.9418 2.5446 38 1 1.3518 4.2668 2.7400 39 1 0.4220 5.3358 4.7311 40 1 -1.9889 6.4538 5.5973 41 1 0.2478 1.4963 6.6837 42 1 1.1876 0.4512 4.6847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158636819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:39 Heat of formation + Delta-G solvation = -54.729513 kcal Electronic energy + Delta-G solvation = -21503.835972 eV Core-core repulsion = 18446.988953 eV Total energy + Delta-G solvation = -3056.847018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.70342 -39.45759 -37.63390 -36.18028 -34.68653 -32.19159 -31.48525 -31.16322 -30.17718 -27.01456 -25.88169 -24.25249 -23.56097 -23.03617 -21.72617 -19.73202 -19.22851 -18.33498 -17.46178 -17.07537 -16.53560 -16.17299 -15.81384 -15.63450 -14.95387 -14.77764 -14.54342 -14.17530 -13.96866 -13.76984 -13.59540 -13.44102 -13.35294 -12.94799 -12.86215 -12.75301 -12.67621 -12.47298 -12.31699 -12.15824 -11.90023 -11.74984 -11.68586 -11.38530 -11.30454 -11.14392 -10.65928 -10.34456 -9.46503 -8.74352 -8.50342 -6.33712 0.81594 1.11546 1.37705 1.44376 1.53120 1.84993 2.22760 2.37212 2.81382 3.63329 3.67977 3.71528 3.88872 4.16343 4.32046 4.42261 4.46407 4.48361 4.53143 4.67345 4.71981 4.80721 4.94893 4.96442 4.99819 5.05138 5.12168 5.13018 5.17122 5.23163 5.29821 5.30335 5.33736 5.40772 5.44080 5.61000 5.70199 5.87161 6.08356 6.14619 6.34928 6.69866 6.75348 6.95337 7.01767 7.45311 8.42822 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034453 B = 0.003959 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.512177 B = 7071.214789 C = 7322.786730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.106 4.106 3 C -0.069 4.069 4 C -0.141 4.141 5 C -0.103 4.103 6 C -0.146 4.146 7 C 0.506 3.494 8 O -0.581 6.581 9 N -0.644 5.644 10 C 0.023 3.977 11 C -0.110 4.110 12 C -0.168 4.168 13 C 0.065 3.935 14 C -0.498 4.498 15 H 0.080 0.920 16 C 0.022 3.978 17 N -0.849 5.849 18 Si 0.991 3.009 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.255 1.255 22 C -0.208 4.208 23 C -0.109 4.109 24 H 0.017 0.983 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.415 0.585 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.281 0.719 41 H 0.113 0.887 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.095 -12.147 -11.776 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.143 4.143 3 C -0.072 4.072 4 C -0.198 4.198 5 C -0.141 4.141 6 C -0.203 4.203 7 C 0.295 3.705 8 O -0.460 6.460 9 N -0.288 5.288 10 C -0.071 4.071 11 C -0.131 4.131 12 C -0.189 4.189 13 C 0.063 3.937 14 C -0.529 4.529 15 H 0.098 0.902 16 C -0.189 4.189 17 N -0.477 5.477 18 Si 0.812 3.188 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.228 4.228 23 C -0.129 4.129 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.253 0.747 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.484 -11.300 -12.001 18.103 hybrid contribution -0.592 0.800 0.793 1.273 sum 6.892 -10.500 -11.208 16.833 Atomic orbital electron populations 1.21872 0.96849 1.02192 1.00698 1.21675 0.95212 0.92571 1.04847 1.20915 0.98475 0.96936 0.90904 1.21958 0.90563 1.02598 1.04725 1.21376 1.00368 0.98608 0.93771 1.21872 1.02126 1.00914 0.95371 1.21542 0.79216 0.84194 0.85531 1.90684 1.39959 1.28258 1.87103 1.42944 1.46977 1.35220 1.03698 1.17389 1.09459 0.91258 0.88963 1.20646 1.01295 0.94040 0.97083 1.21167 1.02944 0.99868 0.94882 1.18047 0.89896 0.92018 0.93722 1.19773 1.25552 1.13371 0.94190 0.90178 1.26864 0.96345 0.95400 1.00300 1.69923 1.30917 1.20959 1.25913 0.85064 0.77586 0.78779 0.77373 1.18639 1.19786 1.17818 1.20962 1.08686 0.94098 0.99070 1.20442 1.00797 0.98741 0.92918 0.96347 0.92383 0.90613 0.87296 0.90307 0.90884 0.88075 0.93431 0.93183 0.93674 0.90849 0.92389 0.90847 0.74721 0.88870 0.87924 0.90808 0.86901 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 9.31 71.98 0.67 -2.92 16 2 C -0.11 -1.85 4.55 30.60 0.14 -1.72 16 3 C -0.07 -1.59 0.43 -52.93 -0.02 -1.61 16 4 C -0.14 -2.40 8.01 71.98 0.58 -1.82 16 5 C -0.10 -2.47 3.93 30.59 0.12 -2.35 16 6 C -0.15 -2.18 9.21 71.98 0.66 -1.52 16 7 C 0.51 17.82 5.05 87.66 0.44 18.26 16 8 O -0.58 -27.18 13.40 -3.05 -0.04 -27.22 16 9 N -0.64 -21.97 5.08 -303.11 -1.54 -23.51 16 10 C 0.02 1.02 6.31 38.56 0.24 1.27 16 11 C -0.11 -5.87 8.61 22.13 0.19 -5.68 16 12 C -0.17 -9.76 8.61 22.48 0.19 -9.57 16 13 C 0.07 3.69 5.55 -21.27 -0.12 3.57 16 14 C -0.50 -27.88 9.02 23.39 0.21 -27.66 16 15 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 16 C 0.02 1.18 5.42 85.24 0.46 1.64 16 17 N -0.85 -48.47 10.61 21.82 0.23 -48.24 16 18 Si 0.99 40.52 29.56 68.60 2.03 42.55 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.21 -10.15 9.74 22.48 0.22 -9.93 16 23 C -0.11 -4.64 9.90 22.14 0.22 -4.42 16 24 H 0.02 0.55 7.22 -2.39 -0.02 0.53 16 25 H 0.06 1.31 6.43 -2.39 -0.02 1.30 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.11 1.24 6.43 -2.39 -0.02 1.23 16 28 H 0.08 1.20 7.67 -2.39 -0.02 1.18 16 29 H 0.07 1.05 7.47 -2.39 -0.02 1.03 16 30 H 0.10 1.11 6.43 -2.39 -0.02 1.09 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.41 6.39 -2.38 -0.02 1.39 16 33 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.07 0.88 6.43 -2.39 -0.02 0.86 16 35 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.87 6.43 -2.39 -0.02 0.86 16 37 H 0.42 10.37 7.67 -92.71 -0.71 9.66 16 38 H 0.09 5.11 6.22 -2.91 -0.02 5.10 16 39 H 0.10 6.38 6.15 -2.91 -0.02 6.36 16 40 H 0.28 14.75 8.30 -92.71 -0.77 13.98 16 41 H 0.11 5.01 8.06 -2.92 -0.02 4.99 16 42 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -72.36 329.34 5.20 -67.16 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.31 Total: 33.73 kcal Atomic # 6 Polarization: -48.67 SS G_CDS: 4.21 Total: -44.46 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -1.31 Total: -71.75 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.04 Total: -27.22 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -72.36 5.20 -67.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158636819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.430 kcal (2) G-P(sol) polarization free energy of solvation -72.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds