Wall clock time and date at job start Mon Mar 30 2020 02:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46885 * 2 1 4 4 C 1.37976 * 120.07640 * 262.39268 * 3 2 1 5 5 C 1.38329 * 120.14677 * 179.70271 * 4 3 2 6 6 C 1.38388 * 120.29291 * 0.29901 * 5 4 3 7 7 C 1.37929 * 120.14269 * 359.97438 * 6 5 4 8 8 C 1.39556 * 120.07324 * 82.65066 * 3 2 1 9 9 C 1.47851 * 120.14539 * 0.04313 * 8 3 2 10 10 O 1.21551 * 119.99931 * 51.75467 * 9 8 3 11 11 N 1.34774 * 120.00118 * 231.76351 * 9 8 3 12 12 C 1.46496 * 120.00219 * 185.24330 * 11 9 8 13 13 C 1.50695 * 109.47455 * 89.99333 * 12 11 9 14 14 H 1.07999 * 120.00149 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00283 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99743 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00120 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47055 * 90.00646 * 17 15 13 19 19 H 1.48504 * 109.46820 * 210.00213 * 17 15 13 20 20 H 1.48498 * 109.47368 * 329.99930 * 17 15 13 21 21 C 1.46502 * 120.00201 * 5.23398 * 11 9 8 22 22 C 1.52995 * 109.47216 * 122.50503 * 21 11 9 23 23 C 1.52996 * 109.47666 * 242.51020 * 21 11 9 24 24 H 1.08995 * 109.46956 * 60.00006 * 1 2 3 25 25 H 1.09007 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46785 * 299.99720 * 1 2 3 27 27 H 1.09008 * 109.46864 * 240.00189 * 2 1 3 28 28 H 1.08994 * 109.47238 * 120.00459 * 2 1 3 29 29 H 1.08008 * 119.92692 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.85950 * 180.28091 * 5 4 3 31 31 H 1.08002 * 119.92654 * 179.97438 * 6 5 4 32 32 H 1.08007 * 120.07382 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47108 * 209.99577 * 12 11 9 34 34 H 1.09005 * 109.46676 * 329.99046 * 12 11 9 35 35 H 0.97005 * 119.99839 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.46825 * 2.50834 * 21 11 9 37 37 H 1.08993 * 109.47498 * 60.00089 * 22 21 11 38 38 H 1.08998 * 109.47312 * 180.02562 * 22 21 11 39 39 H 1.08998 * 109.47228 * 300.00362 * 22 21 11 40 40 H 1.08999 * 109.47236 * 59.99384 * 23 21 11 41 41 H 1.08998 * 109.47476 * 180.02562 * 23 21 11 42 42 H 1.09005 * 109.46847 * 299.99801 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4118 2.0201 -1.1835 5 6 2.8672 3.3262 -1.1860 6 6 2.9514 4.0385 -0.0024 7 6 2.5805 3.4493 1.1883 8 6 2.1197 2.1316 1.1978 9 6 1.7211 1.4937 2.4706 10 8 2.1813 0.4115 2.7783 11 7 0.8474 2.1119 3.2896 12 6 0.5400 1.5366 4.6014 13 6 1.5001 2.0824 5.6267 14 1 2.2626 2.7876 5.3310 15 6 1.4049 1.6814 6.9425 16 7 0.4766 0.8222 7.3026 17 14 2.5954 2.3574 8.2134 18 1 2.0327 3.5956 8.8095 19 1 2.8072 1.3463 9.2803 20 1 3.8928 2.6675 7.5608 21 6 0.2051 3.3593 2.8682 22 6 -1.3148 3.1869 2.9013 23 6 0.6110 4.4882 3.8178 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.3490 1.4696 -2.1106 30 1 3.1588 3.7922 -2.1156 31 1 3.3082 5.0578 -0.0112 32 1 2.6462 4.0064 2.1113 33 1 -0.4799 1.7984 4.8830 34 1 0.6368 0.4519 4.5540 35 1 0.4094 0.5403 8.2284 36 1 0.5208 3.6061 1.8545 37 1 -1.6305 2.9401 3.9149 38 1 -1.7927 4.1148 2.5874 39 1 -1.6040 2.3827 2.2247 40 1 1.6938 4.6110 3.7943 41 1 0.1328 5.4162 3.5045 42 1 0.2953 4.2414 4.8315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161904091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:50 Heat of formation + Delta-G solvation = -22.501691 kcal Electronic energy + Delta-G solvation = -22304.828493 eV Core-core repulsion = 19249.378978 eV Total energy + Delta-G solvation = -3055.449515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14612 -38.00566 -36.02132 -33.85438 -32.86051 -31.12804 -30.76088 -29.30175 -27.30654 -26.71611 -24.19544 -23.30097 -22.54760 -21.20180 -20.68349 -18.44053 -16.92620 -16.44979 -15.95632 -15.53172 -15.20217 -14.58454 -14.23726 -13.90244 -13.67293 -13.36500 -13.34499 -13.02725 -12.99797 -12.47664 -12.27179 -12.04571 -11.78998 -11.62625 -11.57343 -11.30236 -11.18345 -10.93465 -10.82295 -10.75950 -10.66647 -10.56755 -10.35719 -10.00334 -9.52933 -8.96028 -8.65652 -8.54729 -8.40646 -7.62840 -6.02954 -4.06445 1.24009 1.46963 3.29870 3.36435 3.38145 3.43172 3.86435 4.01417 4.45592 4.86962 4.90371 5.00555 5.09665 5.30704 5.31864 5.33258 5.47784 5.57144 5.60518 5.62503 5.70898 5.73330 5.96386 6.03853 6.04776 6.12747 6.15932 6.28296 6.30589 6.36936 6.45404 6.49513 6.53789 6.63578 6.75181 6.96630 7.02380 7.15805 7.49155 7.58402 7.94149 8.25803 8.44675 8.91136 9.09452 9.57724 11.05091 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.005870 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.528689 B = 4769.107244 C = 4975.970638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C -0.038 4.038 4 C -0.128 4.128 5 C -0.109 4.109 6 C -0.133 4.133 7 C -0.088 4.088 8 C -0.112 4.112 9 C 0.551 3.449 10 O -0.535 6.535 11 N -0.583 5.583 12 C 0.245 3.755 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.127 3.873 22 C -0.161 4.161 23 C -0.159 4.159 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 6.475 -15.985 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C -0.039 4.039 4 C -0.146 4.146 5 C -0.127 4.127 6 C -0.151 4.151 7 C -0.107 4.107 8 C -0.115 4.115 9 C 0.338 3.662 10 O -0.414 6.414 11 N -0.314 5.314 12 C 0.126 3.874 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.023 3.977 22 C -0.219 4.219 23 C -0.217 4.217 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.538 5.791 -15.615 16.663 hybrid contribution 0.703 0.536 0.821 1.206 sum 0.165 6.327 -14.794 16.091 Atomic orbital electron populations 1.21683 0.94720 1.01764 1.01715 1.20791 0.96329 0.92598 1.04310 1.19922 0.96199 0.96034 0.91714 1.20951 1.00952 0.95384 0.97275 1.21190 0.99030 0.94488 0.97984 1.21034 1.01544 1.00127 0.92420 1.21422 0.96952 0.93528 0.98764 1.20129 1.02491 0.94623 0.94293 1.18163 0.79933 0.85102 0.83029 1.90712 1.54884 1.20825 1.74945 1.48270 1.41366 1.23278 1.18505 1.19282 0.96381 0.95299 0.76457 1.21437 1.15783 1.26120 0.92598 0.92381 1.24919 0.95694 0.95053 0.98415 1.69935 1.33369 1.32218 1.17837 0.86554 0.81509 0.78571 0.81145 1.20673 1.21151 1.19947 1.21139 0.92865 0.85382 0.98344 1.22138 0.95441 1.01123 1.03150 1.22191 1.01115 0.96323 1.02032 0.93093 0.92353 0.92482 0.91363 0.88223 0.85959 0.86159 0.85888 0.85223 0.94620 0.93873 0.92787 0.90144 0.91226 0.92303 0.92970 0.92890 0.93175 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.87 37.16 0.37 -1.58 16 2 C -0.10 -1.54 5.56 -27.88 -0.15 -1.69 16 3 C -0.04 -0.58 5.16 -104.23 -0.54 -1.12 16 4 C -0.13 -1.59 9.66 -39.64 -0.38 -1.97 16 5 C -0.11 -1.23 10.04 -39.49 -0.40 -1.62 16 6 C -0.13 -1.62 10.03 -39.64 -0.40 -2.02 16 7 C -0.09 -1.33 7.55 -39.19 -0.30 -1.63 16 8 C -0.11 -1.96 4.73 -104.97 -0.50 -2.46 16 9 C 0.55 11.93 6.16 -12.33 -0.08 11.85 16 10 O -0.54 -13.67 14.56 5.32 0.08 -13.59 16 11 N -0.58 -12.41 2.39 -168.58 -0.40 -12.81 16 12 C 0.24 6.29 4.70 -5.20 -0.02 6.27 16 13 C -0.52 -14.38 7.84 -34.44 -0.27 -14.65 16 14 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.13 2.16 2.48 -67.93 -0.17 1.99 16 22 C -0.16 -2.47 9.12 37.16 0.34 -2.13 16 23 C -0.16 -2.62 8.34 37.16 0.31 -2.31 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16 27 H 0.07 0.84 8.03 -51.92 -0.42 0.42 16 28 H 0.10 1.82 5.90 -51.93 -0.31 1.51 16 29 H 0.12 1.21 8.05 -52.48 -0.42 0.79 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.13 1.97 6.15 -52.48 -0.32 1.65 16 33 H 0.04 0.93 6.30 -51.93 -0.33 0.60 16 34 H 0.04 1.27 7.36 -51.93 -0.38 0.89 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.24 4.93 -51.93 -0.26 0.99 16 37 H 0.07 1.19 6.58 -51.93 -0.34 0.85 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.89 6.91 -51.93 -0.36 0.53 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -31.58 335.34 -8.22 -39.80 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.39 Total: 1.86 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -2.28 Total: -11.46 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.33 Total: -38.40 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.58 -8.22 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161904091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.302 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds