Wall clock time and date at job start Mon Mar 30 2020 02:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.46885 * 2 1 4 4 C 1.37976 * 120.07640 * 262.39268 * 3 2 1 5 5 C 1.38329 * 120.14677 * 179.70271 * 4 3 2 6 6 C 1.38388 * 120.29291 * 0.29901 * 5 4 3 7 7 C 1.37929 * 120.14269 * 359.97438 * 6 5 4 8 8 C 1.39556 * 120.07324 * 82.65066 * 3 2 1 9 9 C 1.47851 * 120.14539 * 0.04313 * 8 3 2 10 10 O 1.21551 * 119.99931 * 51.75467 * 9 8 3 11 11 N 1.34774 * 120.00118 * 231.76351 * 9 8 3 12 12 C 1.46496 * 120.00219 * 185.24330 * 11 9 8 13 13 C 1.50695 * 109.47455 * 89.99333 * 12 11 9 14 14 H 1.07999 * 120.00149 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00283 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99743 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00120 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47055 * 90.00646 * 17 15 13 19 19 H 1.48504 * 109.46820 * 210.00213 * 17 15 13 20 20 H 1.48498 * 109.47368 * 329.99930 * 17 15 13 21 21 C 1.46502 * 120.00201 * 5.23398 * 11 9 8 22 22 C 1.52995 * 109.47216 * 122.50503 * 21 11 9 23 23 C 1.52996 * 109.47666 * 242.51020 * 21 11 9 24 24 H 1.08995 * 109.46956 * 60.00006 * 1 2 3 25 25 H 1.09007 * 109.46862 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46785 * 299.99720 * 1 2 3 27 27 H 1.09008 * 109.46864 * 240.00189 * 2 1 3 28 28 H 1.08994 * 109.47238 * 120.00459 * 2 1 3 29 29 H 1.08008 * 119.92692 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.85950 * 180.28091 * 5 4 3 31 31 H 1.08002 * 119.92654 * 179.97438 * 6 5 4 32 32 H 1.08007 * 120.07382 * 180.02562 * 7 6 5 33 33 H 1.08996 * 109.47108 * 209.99577 * 12 11 9 34 34 H 1.09005 * 109.46676 * 329.99046 * 12 11 9 35 35 H 0.97005 * 119.99839 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.46825 * 2.50834 * 21 11 9 37 37 H 1.08993 * 109.47498 * 60.00089 * 22 21 11 38 38 H 1.08998 * 109.47312 * 180.02562 * 22 21 11 39 39 H 1.08998 * 109.47228 * 300.00362 * 22 21 11 40 40 H 1.08999 * 109.47236 * 59.99384 * 23 21 11 41 41 H 1.08998 * 109.47476 * 180.02562 * 23 21 11 42 42 H 1.09005 * 109.46847 * 299.99801 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4118 2.0201 -1.1835 5 6 2.8672 3.3262 -1.1860 6 6 2.9514 4.0385 -0.0024 7 6 2.5805 3.4493 1.1883 8 6 2.1197 2.1316 1.1978 9 6 1.7211 1.4937 2.4706 10 8 2.1813 0.4115 2.7783 11 7 0.8474 2.1119 3.2896 12 6 0.5400 1.5366 4.6014 13 6 1.5001 2.0824 5.6267 14 1 2.2626 2.7876 5.3310 15 6 1.4049 1.6814 6.9425 16 7 0.4766 0.8222 7.3026 17 14 2.5954 2.3574 8.2134 18 1 2.0327 3.5956 8.8095 19 1 2.8072 1.3463 9.2803 20 1 3.8928 2.6675 7.5608 21 6 0.2051 3.3593 2.8682 22 6 -1.3148 3.1869 2.9013 23 6 0.6110 4.4882 3.8178 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.3490 1.4696 -2.1106 30 1 3.1588 3.7922 -2.1156 31 1 3.3082 5.0578 -0.0112 32 1 2.6462 4.0064 2.1113 33 1 -0.4799 1.7984 4.8830 34 1 0.6368 0.4519 4.5540 35 1 0.4094 0.5403 8.2284 36 1 0.5208 3.6061 1.8545 37 1 -1.6305 2.9401 3.9149 38 1 -1.7927 4.1148 2.5874 39 1 -1.6040 2.3827 2.2247 40 1 1.6938 4.6110 3.7943 41 1 0.1328 5.4162 3.5045 42 1 0.2953 4.2414 4.8315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161904091.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:50 Heat of formation + Delta-G solvation = -40.556942 kcal Electronic energy + Delta-G solvation = -22305.611428 eV Core-core repulsion = 19249.378978 eV Total energy + Delta-G solvation = -3056.232450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53812 -39.35404 -37.65773 -35.00059 -34.94005 -32.48624 -32.26995 -30.40176 -29.22485 -28.05197 -25.74080 -24.59383 -24.07619 -22.58789 -21.89341 -19.90000 -18.61930 -18.39104 -17.23062 -16.85671 -16.74546 -16.29499 -15.62389 -15.32725 -14.99943 -14.73574 -14.56154 -14.39264 -14.17067 -14.16917 -13.80005 -13.41888 -13.28160 -13.10676 -12.93818 -12.78779 -12.69691 -12.52907 -12.38257 -12.25041 -12.11886 -11.97275 -11.74500 -11.68856 -11.52241 -10.62727 -10.58000 -9.77708 -9.63536 -9.42385 -8.21138 -6.33662 0.12055 0.44527 1.34327 1.37380 1.47240 1.88102 2.27106 2.42966 2.83788 3.08370 3.61160 3.81822 3.91431 3.97454 4.14474 4.26750 4.32195 4.38717 4.43414 4.53410 4.57816 4.61938 4.78256 4.81708 4.86528 4.95146 4.99803 5.02687 5.07370 5.11117 5.14936 5.21988 5.31132 5.39546 5.47493 5.50976 5.57437 5.62300 5.68013 5.87660 6.04899 6.08891 6.71108 6.78889 7.27809 7.45029 8.86349 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020321 B = 0.005870 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.528689 B = 4769.107244 C = 4975.970638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.052 4.052 4 C -0.121 4.121 5 C -0.092 4.092 6 C -0.124 4.124 7 C -0.100 4.100 8 C -0.142 4.142 9 C 0.545 3.455 10 O -0.592 6.592 11 N -0.587 5.587 12 C 0.264 3.736 13 C -0.529 4.529 14 H 0.054 0.946 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.963 3.037 18 H -0.262 1.262 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.123 3.877 22 C -0.155 4.155 23 C -0.152 4.152 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.024 0.976 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.155 0.845 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.027 0.973 34 H -0.008 1.008 35 H 0.266 0.734 36 H 0.105 0.895 37 H 0.043 0.957 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.125 9.468 -19.049 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.141 4.141 3 C -0.053 4.053 4 C -0.139 4.139 5 C -0.109 4.109 6 C -0.142 4.142 7 C -0.118 4.118 8 C -0.146 4.146 9 C 0.334 3.666 10 O -0.475 6.475 11 N -0.317 5.317 12 C 0.143 3.857 13 C -0.567 4.567 14 H 0.072 0.928 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.199 1.199 21 C 0.020 3.980 22 C -0.213 4.213 23 C -0.210 4.210 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.173 0.827 30 H 0.182 0.818 31 H 0.175 0.825 32 H 0.139 0.861 33 H 0.045 0.955 34 H 0.010 0.990 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.243 8.829 -18.701 20.682 hybrid contribution 0.453 -0.392 1.652 1.757 sum 0.696 8.437 -17.049 19.035 Atomic orbital electron populations 1.21639 0.94133 1.02116 1.01384 1.20755 0.96926 0.92936 1.03468 1.20060 0.97069 0.95925 0.92223 1.21313 0.99456 0.96161 0.96983 1.21714 0.96292 0.93663 0.99262 1.21408 0.99918 1.01527 0.91314 1.21443 0.97832 0.92497 1.00060 1.19850 1.05982 0.96151 0.92572 1.18977 0.78832 0.84413 0.84362 1.90663 1.56842 1.23444 1.76531 1.48271 1.41746 1.24692 1.16953 1.18690 0.95697 0.92420 0.78884 1.21639 1.15811 1.25923 0.93347 0.92790 1.25810 0.97417 0.95281 1.00595 1.70062 1.35024 1.33414 1.18438 0.85487 0.79007 0.78476 0.78299 1.18708 1.20821 1.19917 1.21469 0.93498 0.83479 0.99554 1.22107 0.94511 1.03064 1.01634 1.22119 1.01074 0.97824 0.99949 0.90302 0.91776 0.95650 0.88386 0.92731 0.82734 0.81834 0.82530 0.86078 0.95472 0.98997 0.92550 0.87735 0.93832 0.88392 0.93131 0.93468 0.89041 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.87 71.98 0.71 -3.04 16 2 C -0.10 -3.12 5.56 29.85 0.17 -2.96 16 3 C -0.05 -1.53 5.16 -19.61 -0.10 -1.63 16 4 C -0.12 -2.50 9.66 22.23 0.21 -2.28 16 5 C -0.09 -1.55 10.04 22.33 0.22 -1.32 16 6 C -0.12 -2.46 10.03 22.23 0.22 -2.24 16 7 C -0.10 -2.86 7.55 22.52 0.17 -2.69 16 8 C -0.14 -5.02 4.73 -20.09 -0.09 -5.11 16 9 C 0.54 25.17 6.16 86.79 0.53 25.70 16 10 O -0.59 -33.11 14.56 -3.87 -0.06 -33.17 16 11 N -0.59 -26.58 2.39 -805.55 -1.92 -28.51 16 12 C 0.26 14.70 4.70 85.63 0.40 15.10 16 13 C -0.53 -30.80 7.84 25.60 0.20 -30.59 16 14 H 0.05 3.11 7.60 -2.91 -0.02 3.09 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 17 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 20 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 21 C 0.12 4.19 2.48 44.99 0.11 4.30 16 22 C -0.16 -4.78 9.12 71.98 0.66 -4.12 16 23 C -0.15 -4.96 8.34 71.98 0.60 -4.36 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.02 0.83 7.68 -2.39 -0.02 0.81 16 27 H 0.10 2.27 8.03 -2.38 -0.02 2.25 16 28 H 0.05 2.15 5.90 -2.39 -0.01 2.14 16 29 H 0.16 2.19 8.05 -2.91 -0.02 2.16 16 30 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.12 3.59 6.15 -2.91 -0.02 3.58 16 33 H 0.03 1.54 6.30 -2.39 -0.02 1.52 16 34 H -0.01 -0.53 7.36 -2.38 -0.02 -0.54 16 35 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 36 H 0.10 3.12 4.93 -2.38 -0.01 3.11 16 37 H 0.04 1.55 6.58 -2.39 -0.02 1.54 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.57 6.91 -2.39 -0.02 1.55 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 1.91 6.92 -2.38 -0.02 1.89 16 Total: -1.00 -76.19 335.34 5.81 -70.38 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.00 Total: 14.77 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.48 Total: -14.34 kcal Atomic # 7 Polarization: -83.74 SS G_CDS: -1.64 Total: -85.38 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.06 Total: -33.17 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -76.19 5.81 -70.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161904091.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.819 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds