Wall clock time and date at job start Mon Mar 30 2020 02:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46927 * 2 1 4 4 C 1.38243 * 120.00313 * 90.00014 * 3 2 1 5 5 C 1.38232 * 120.00161 * 180.02562 * 4 3 2 6 6 C 1.38230 * 120.00018 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00132 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47113 * 89.99962 * 7 6 5 9 9 O 1.21279 * 120.00235 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99900 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99912 * 359.97438 * 10 8 7 12 12 C 1.46495 * 120.00002 * 179.97438 * 10 8 7 13 13 H 1.09002 * 109.47308 * 359.97438 * 12 10 8 14 14 C 1.53001 * 109.47398 * 119.99746 * 12 10 8 15 15 C 1.50702 * 109.47171 * 239.99670 * 12 10 8 16 16 H 1.08001 * 120.00089 * 325.05166 * 15 12 10 17 17 C 1.37880 * 119.99796 * 145.04858 * 15 12 10 18 18 N 1.31514 * 119.99543 * 176.46253 * 17 15 12 19 19 Si 1.86794 * 120.00028 * 356.46680 * 17 15 12 20 20 H 1.48499 * 109.47255 * 274.92138 * 19 17 15 21 21 H 1.48497 * 109.47373 * 34.92801 * 19 17 15 22 22 H 1.48507 * 109.46963 * 154.92420 * 19 17 15 23 23 C 1.38243 * 119.99952 * 0.25268 * 6 5 4 24 24 C 1.38232 * 119.99988 * 270.01183 * 3 2 1 25 25 H 1.08996 * 109.47291 * 300.00644 * 1 2 3 26 26 H 1.09004 * 109.46404 * 60.00572 * 1 2 3 27 27 H 1.09003 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47291 * 239.99356 * 2 1 3 29 29 H 1.09004 * 109.46404 * 119.99428 * 2 1 3 30 30 H 1.08000 * 119.99567 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.99613 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.46634 * 329.99675 * 7 6 5 33 33 H 1.09002 * 109.47344 * 210.00087 * 7 6 5 34 34 H 1.09003 * 109.47307 * 270.00158 * 11 10 8 35 35 H 1.09006 * 109.47299 * 30.00251 * 11 10 8 36 36 H 1.09005 * 109.47170 * 150.00291 * 11 10 8 37 37 H 1.09004 * 109.47201 * 65.54154 * 14 12 10 38 38 H 1.08997 * 109.47748 * 185.54369 * 14 12 10 39 39 H 1.09001 * 109.47150 * 305.54548 * 14 12 10 40 40 H 0.97005 * 119.99553 * 179.97438 * 18 17 15 41 41 H 1.08005 * 119.99879 * 179.72332 * 23 6 5 42 42 H 1.08001 * 120.00210 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7230 3.3760 1.1971 6 6 2.9533 4.0276 0.0000 7 6 3.4545 5.4488 -0.0001 8 6 4.9615 5.4500 0.0006 9 8 5.5687 4.4003 0.0015 10 7 5.6344 6.6178 0.0011 11 6 4.9008 7.8859 0.0006 12 6 7.0993 6.6190 0.0023 13 1 7.4636 5.5917 0.0030 14 6 7.6098 7.3407 -1.2465 15 6 7.6001 7.3299 1.2332 16 1 7.0563 8.1758 1.6271 17 6 8.7525 6.9003 1.8564 18 7 9.2277 7.5623 2.8887 19 14 9.6388 5.3781 1.2346 20 1 9.0303 4.1678 1.8429 21 1 9.5174 5.3037 -0.2435 22 1 11.0737 5.4528 1.6102 23 6 2.7184 3.3775 -1.1972 24 6 2.2625 2.0725 -1.1971 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0824 1.5635 2.1325 31 1 2.9025 3.8852 2.1325 32 1 3.0903 5.9625 0.8897 33 1 3.0911 5.9622 -0.8903 34 1 4.7197 8.2005 -1.0272 35 1 3.9481 7.7548 0.5137 36 1 5.4889 8.6461 0.5149 37 1 7.3289 8.3928 -1.1986 38 1 8.6954 7.2564 -1.2967 39 1 7.1688 6.8870 -2.1341 40 1 10.0382 7.2598 3.3274 41 1 2.8942 3.8881 -2.1325 42 1 2.0819 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163836668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:48 Heat of formation + Delta-G solvation = -26.079286 kcal Electronic energy + Delta-G solvation = -21084.461183 eV Core-core repulsion = 18028.856531 eV Total energy + Delta-G solvation = -3055.604651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77820 -38.67589 -35.48996 -34.48959 -32.73202 -31.38003 -30.77927 -30.06130 -27.01936 -26.11151 -25.23793 -23.40007 -22.60389 -21.23682 -20.24281 -18.25189 -17.23619 -16.31692 -15.99453 -15.72049 -15.36237 -14.92448 -14.61113 -13.99711 -13.76286 -13.69518 -13.23746 -13.09459 -12.71312 -12.60462 -12.40745 -12.39637 -12.05367 -11.82556 -11.70696 -11.58246 -11.32555 -11.21023 -11.04975 -10.77604 -10.74626 -10.69835 -10.40913 -9.78447 -9.29474 -9.03859 -8.74374 -8.61773 -8.32108 -7.64520 -6.16966 -4.19126 1.46715 1.58255 3.31625 3.35535 3.39380 3.46748 3.73249 4.09119 4.39168 4.70797 4.80720 4.95837 5.07015 5.12308 5.17856 5.24294 5.33782 5.42267 5.44428 5.56907 5.66566 5.69072 5.75001 5.78538 5.89514 5.97346 6.01077 6.19017 6.22431 6.28590 6.35710 6.40692 6.54819 6.59783 6.71540 6.79063 6.94190 7.08271 7.16830 7.49967 7.65409 8.16134 8.51490 8.84034 8.99162 9.45994 10.94937 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.004237 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.238719 B = 6606.159531 C = 7069.130136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.058 4.058 7 C -0.103 4.103 8 C 0.505 3.495 9 O -0.549 6.549 10 N -0.591 5.591 11 C 0.082 3.918 12 C 0.223 3.777 13 H 0.063 0.937 14 C -0.146 4.146 15 C -0.525 4.525 16 H 0.078 0.922 17 C 0.079 3.921 18 N -0.893 5.893 19 Si 0.875 3.125 20 H -0.271 1.271 21 H -0.264 1.264 22 H -0.288 1.288 23 C -0.104 4.104 24 C -0.119 4.119 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.025 0.975 40 H 0.266 0.734 41 H 0.118 0.882 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.866 -7.867 -7.094 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.059 4.059 7 C -0.143 4.143 8 C 0.292 3.708 9 O -0.427 6.427 10 N -0.323 5.323 11 C -0.062 4.062 12 C 0.122 3.878 13 H 0.081 0.919 14 C -0.205 4.205 15 C -0.563 4.563 16 H 0.096 0.904 17 C -0.124 4.124 18 N -0.530 5.530 19 Si 0.702 3.298 20 H -0.196 1.196 21 H -0.188 1.188 22 H -0.214 1.214 23 C -0.122 4.122 24 C -0.137 4.137 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.136 0.864 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.365 -8.384 -6.951 19.658 hybrid contribution 0.633 -0.523 -0.134 0.833 sum -15.732 -8.908 -7.085 19.417 Atomic orbital electron populations 1.21745 0.94960 1.01388 1.02156 1.20513 0.95935 0.92988 1.02663 1.19807 0.99987 0.95987 0.93311 1.20923 1.00469 0.94775 0.97332 1.20989 0.98507 0.94880 0.97598 1.19367 0.97947 0.95128 0.93450 1.20752 0.94267 0.94826 1.04500 1.20334 0.88940 0.84200 0.77309 1.90659 1.70045 1.31207 1.50815 1.48317 1.08459 1.04695 1.70788 1.21639 0.96413 0.87852 1.00292 1.19277 0.75711 0.98213 0.94585 0.91890 1.22214 1.00687 1.00441 0.97151 1.21132 1.09484 1.15868 1.09834 0.90380 1.24953 0.96815 0.96462 0.94205 1.69890 1.22333 1.39534 1.21208 0.86893 0.78549 0.84171 0.80210 1.19638 1.18840 1.21387 1.20930 0.99059 0.94868 0.97362 1.20892 1.00732 0.94765 0.97270 0.92595 0.92635 0.92656 0.91254 0.91209 0.86411 0.86188 0.88357 0.88650 0.93877 0.92461 0.90009 0.93169 0.92697 0.95567 0.92397 0.86424 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.81 6.06 -27.88 -0.17 -0.98 16 3 C -0.09 -1.14 5.13 -104.62 -0.54 -1.68 16 4 C -0.12 -1.56 9.70 -39.58 -0.38 -1.94 16 5 C -0.10 -1.51 9.70 -39.59 -0.38 -1.89 16 6 C -0.06 -0.89 4.37 -104.62 -0.46 -1.35 16 7 C -0.10 -1.53 4.38 -29.04 -0.13 -1.66 16 8 C 0.51 10.31 7.67 -10.99 -0.08 10.22 16 9 O -0.55 -13.55 15.36 5.56 0.09 -13.46 16 10 N -0.59 -12.26 2.75 -175.26 -0.48 -12.74 16 11 C 0.08 1.31 9.40 59.85 0.56 1.87 16 12 C 0.22 5.41 2.27 -69.08 -0.16 5.26 16 13 H 0.06 1.70 4.11 -51.93 -0.21 1.49 16 14 C -0.15 -3.11 9.09 37.16 0.34 -2.77 16 15 C -0.53 -14.47 8.72 -34.44 -0.30 -14.78 16 16 H 0.08 2.26 6.82 -52.49 -0.36 1.90 16 17 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 18 N -0.89 -26.95 13.96 55.43 0.77 -26.17 16 19 Si 0.87 22.53 26.91 -169.99 -4.57 17.96 16 20 H -0.27 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.26 -6.57 6.73 56.52 0.38 -6.19 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C -0.10 -1.47 9.70 -39.58 -0.38 -1.86 16 24 C -0.12 -1.53 9.70 -39.59 -0.38 -1.91 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.10 1.28 7.34 -51.93 -0.38 0.90 16 33 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 36 H 0.08 1.44 6.56 -51.93 -0.34 1.10 16 37 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 38 H 0.05 1.18 7.97 -51.93 -0.41 0.77 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -33.40 343.79 -7.88 -41.29 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.67 Total: 0.03 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.20 Total: -12.08 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.29 Total: -38.92 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.57 Total: 17.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.40 -7.88 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163836668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.208 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds