Wall clock time and date at job start Mon Mar 30 2020 02:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.46927 * 2 1 4 4 C 1.38243 * 120.00313 * 90.00014 * 3 2 1 5 5 C 1.38232 * 120.00161 * 180.02562 * 4 3 2 6 6 C 1.38230 * 120.00018 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00132 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47113 * 89.99962 * 7 6 5 9 9 O 1.21279 * 120.00235 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99900 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99912 * 359.97438 * 10 8 7 12 12 C 1.46495 * 120.00002 * 179.97438 * 10 8 7 13 13 H 1.09002 * 109.47308 * 359.97438 * 12 10 8 14 14 C 1.53001 * 109.47398 * 119.99746 * 12 10 8 15 15 C 1.50702 * 109.47171 * 239.99670 * 12 10 8 16 16 H 1.08001 * 120.00089 * 325.05166 * 15 12 10 17 17 C 1.37880 * 119.99796 * 145.04858 * 15 12 10 18 18 N 1.31514 * 119.99543 * 176.46253 * 17 15 12 19 19 Si 1.86794 * 120.00028 * 356.46680 * 17 15 12 20 20 H 1.48499 * 109.47255 * 274.92138 * 19 17 15 21 21 H 1.48497 * 109.47373 * 34.92801 * 19 17 15 22 22 H 1.48507 * 109.46963 * 154.92420 * 19 17 15 23 23 C 1.38243 * 119.99952 * 0.25268 * 6 5 4 24 24 C 1.38232 * 119.99988 * 270.01183 * 3 2 1 25 25 H 1.08996 * 109.47291 * 300.00644 * 1 2 3 26 26 H 1.09004 * 109.46404 * 60.00572 * 1 2 3 27 27 H 1.09003 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47291 * 239.99356 * 2 1 3 29 29 H 1.09004 * 109.46404 * 119.99428 * 2 1 3 30 30 H 1.08000 * 119.99567 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.99613 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.46634 * 329.99675 * 7 6 5 33 33 H 1.09002 * 109.47344 * 210.00087 * 7 6 5 34 34 H 1.09003 * 109.47307 * 270.00158 * 11 10 8 35 35 H 1.09006 * 109.47299 * 30.00251 * 11 10 8 36 36 H 1.09005 * 109.47170 * 150.00291 * 11 10 8 37 37 H 1.09004 * 109.47201 * 65.54154 * 14 12 10 38 38 H 1.08997 * 109.47748 * 185.54369 * 14 12 10 39 39 H 1.09001 * 109.47150 * 305.54548 * 14 12 10 40 40 H 0.97005 * 119.99553 * 179.97438 * 18 17 15 41 41 H 1.08005 * 119.99879 * 179.72332 * 23 6 5 42 42 H 1.08001 * 120.00210 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7230 3.3760 1.1971 6 6 2.9533 4.0276 0.0000 7 6 3.4545 5.4488 -0.0001 8 6 4.9615 5.4500 0.0006 9 8 5.5687 4.4003 0.0015 10 7 5.6344 6.6178 0.0011 11 6 4.9008 7.8859 0.0006 12 6 7.0993 6.6190 0.0023 13 1 7.4636 5.5917 0.0030 14 6 7.6098 7.3407 -1.2465 15 6 7.6001 7.3299 1.2332 16 1 7.0563 8.1758 1.6271 17 6 8.7525 6.9003 1.8564 18 7 9.2277 7.5623 2.8887 19 14 9.6388 5.3781 1.2346 20 1 9.0303 4.1678 1.8429 21 1 9.5174 5.3037 -0.2435 22 1 11.0737 5.4528 1.6102 23 6 2.7184 3.3775 -1.1972 24 6 2.2625 2.0725 -1.1971 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.0824 1.5635 2.1325 31 1 2.9025 3.8852 2.1325 32 1 3.0903 5.9625 0.8897 33 1 3.0911 5.9622 -0.8903 34 1 4.7197 8.2005 -1.0272 35 1 3.9481 7.7548 0.5137 36 1 5.4889 8.6461 0.5149 37 1 7.3289 8.3928 -1.1986 38 1 8.6954 7.2564 -1.2967 39 1 7.1688 6.8870 -2.1341 40 1 10.0382 7.2598 3.3274 41 1 2.8942 3.8881 -2.1325 42 1 2.0819 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163836668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:47 Heat of formation + Delta-G solvation = -45.274184 kcal Electronic energy + Delta-G solvation = -21085.293536 eV Core-core repulsion = 18028.856531 eV Total energy + Delta-G solvation = -3056.437005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09150 -39.95753 -37.17266 -35.49868 -34.71525 -32.80411 -31.78835 -31.47569 -28.10196 -27.53750 -27.25223 -24.37260 -23.61914 -22.72370 -21.39249 -19.84863 -19.24430 -17.87534 -17.30105 -16.90715 -16.76488 -16.17051 -15.92494 -15.73090 -14.78326 -14.61924 -14.56772 -14.36007 -14.24451 -14.20627 -13.88768 -13.69817 -13.36549 -13.14334 -12.92477 -12.88830 -12.81108 -12.64765 -12.48413 -12.27832 -12.03821 -11.83490 -11.67078 -11.63662 -11.28174 -10.82443 -10.67430 -9.77317 -9.37650 -9.31266 -8.39159 -6.42310 0.42937 0.55107 1.24074 1.30641 1.38771 1.81591 2.25034 2.34113 2.89316 3.06083 3.73400 3.90328 3.92780 4.02195 4.16446 4.21376 4.42944 4.49459 4.50677 4.53609 4.61143 4.62610 4.69312 4.73471 4.76194 4.78015 4.86451 5.03168 5.06898 5.09564 5.14682 5.20256 5.25031 5.34190 5.40171 5.53586 5.54056 5.72852 5.74777 5.84139 6.14223 6.18158 6.63475 6.79912 7.23300 7.43215 8.76222 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.004237 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.238719 B = 6606.159531 C = 7069.130136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.123 4.123 6 C -0.082 4.082 7 C -0.089 4.089 8 C 0.497 3.503 9 O -0.600 6.600 10 N -0.600 5.600 11 C 0.077 3.923 12 C 0.221 3.779 13 H 0.035 0.965 14 C -0.138 4.138 15 C -0.518 4.518 16 H 0.057 0.943 17 C 0.029 3.971 18 N -0.934 5.934 19 Si 0.924 3.076 20 H -0.288 1.288 21 H -0.252 1.252 22 H -0.276 1.276 23 C -0.115 4.115 24 C -0.126 4.126 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.268 0.732 41 H 0.131 0.869 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.732 -8.530 -8.854 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.141 4.141 6 C -0.083 4.083 7 C -0.128 4.128 8 C 0.287 3.713 9 O -0.482 6.482 10 N -0.331 5.331 11 C -0.065 4.065 12 C 0.119 3.881 13 H 0.053 0.947 14 C -0.197 4.197 15 C -0.557 4.557 16 H 0.075 0.925 17 C -0.170 4.170 18 N -0.574 5.574 19 Si 0.750 3.250 20 H -0.214 1.214 21 H -0.176 1.176 22 H -0.201 1.201 23 C -0.133 4.133 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.148 0.852 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.149 0.851 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.259 -9.014 -8.730 22.155 hybrid contribution 1.108 -0.325 0.418 1.228 sum -17.152 -9.338 -8.312 21.225 Atomic orbital electron populations 1.21714 0.93682 1.02439 1.02012 1.20579 0.96958 0.91185 1.03344 1.20194 0.98908 0.97288 0.92922 1.21193 1.00398 0.94524 0.98564 1.21182 0.99390 0.95806 0.97705 1.19525 0.99110 0.95636 0.93995 1.20727 0.89591 0.95558 1.06968 1.21284 0.91208 0.83063 0.75772 1.90628 1.71593 1.32968 1.52994 1.48295 1.07317 1.06732 1.70715 1.21893 0.96834 0.85127 1.02616 1.19056 0.78284 0.96379 0.94402 0.94661 1.22063 1.00218 1.01030 0.96342 1.21402 1.08717 1.14946 1.10625 0.92535 1.25595 0.97977 0.98767 0.94675 1.69983 1.23304 1.41254 1.22855 0.86106 0.78028 0.80556 0.80318 1.21447 1.17563 1.20110 1.21199 0.99004 0.95561 0.97557 1.21235 1.00154 0.94583 0.98428 0.92940 0.92595 0.91024 0.90348 0.90794 0.84947 0.86412 0.86465 0.85244 0.90592 0.89174 0.92064 0.91777 0.93462 0.93415 0.92273 0.85149 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 71.98 0.71 -1.25 16 2 C -0.08 -1.43 6.06 29.85 0.18 -1.24 16 3 C -0.09 -2.18 5.13 -19.87 -0.10 -2.28 16 4 C -0.13 -3.32 9.70 22.27 0.22 -3.11 16 5 C -0.12 -3.58 9.70 22.27 0.22 -3.37 16 6 C -0.08 -2.40 4.37 -19.87 -0.09 -2.48 16 7 C -0.09 -2.43 4.38 29.10 0.13 -2.30 16 8 C 0.50 19.72 7.67 87.66 0.67 20.39 16 9 O -0.60 -29.74 15.36 -3.03 -0.05 -29.78 16 10 N -0.60 -24.06 2.75 -826.79 -2.28 -26.34 16 11 C 0.08 2.28 9.40 127.77 1.20 3.48 16 12 C 0.22 10.65 2.27 44.25 0.10 10.76 16 13 H 0.04 1.91 4.11 -2.39 -0.01 1.90 16 14 C -0.14 -5.64 9.09 71.98 0.65 -4.98 16 15 C -0.52 -28.93 8.72 25.60 0.22 -28.71 16 16 H 0.06 3.34 6.82 -2.91 -0.02 3.32 16 17 C 0.03 1.72 5.47 84.66 0.46 2.18 16 18 N -0.93 -57.66 13.96 21.45 0.30 -57.36 16 19 Si 0.92 47.26 26.91 68.60 1.85 49.11 16 20 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 21 H -0.25 -12.23 6.73 99.48 0.67 -11.56 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 C -0.12 -3.05 9.70 22.27 0.22 -2.84 16 24 C -0.13 -3.00 9.70 22.27 0.22 -2.79 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 29 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.12 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.12 2.73 7.34 -2.39 -0.02 2.71 16 33 H 0.13 2.61 8.05 -2.39 -0.02 2.59 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 2.04 6.44 -2.38 -0.02 2.03 16 36 H 0.06 2.07 6.56 -2.38 -0.02 2.06 16 37 H 0.06 2.40 7.86 -2.38 -0.02 2.39 16 38 H 0.05 1.97 7.97 -2.39 -0.02 1.95 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 41 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -74.15 343.79 5.78 -68.37 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.95 Total: 14.55 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.01 Total: -18.55 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -1.98 Total: -83.70 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.05 Total: -29.78 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.85 Total: 49.11 kcal Total: -74.15 5.78 -68.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163836668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.095 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds