Wall clock time and date at job start Mon Mar 30 2020 02:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38232 * 119.99949 * 89.99779 * 3 2 1 5 5 C 1.38236 * 119.99591 * 179.97438 * 4 3 2 6 6 C 1.38228 * 120.00386 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00027 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46783 * 90.00389 * 7 6 5 9 9 O 1.21279 * 119.99993 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99848 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99715 * 0.02562 * 10 8 7 12 12 C 1.46496 * 119.99770 * 179.97438 * 10 8 7 13 13 H 1.09000 * 109.47080 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47161 * 240.00343 * 12 10 8 15 15 C 1.50696 * 109.46880 * 120.00257 * 12 10 8 16 16 H 1.08000 * 120.00131 * 5.37959 * 15 12 10 17 17 C 1.37882 * 119.99857 * 185.37666 * 15 12 10 18 18 N 1.31514 * 120.00102 * 184.90288 * 17 15 12 19 19 Si 1.86795 * 119.99950 * 5.17502 * 17 15 12 20 20 H 1.48493 * 109.47270 * 269.72359 * 19 17 15 21 21 H 1.48500 * 109.47231 * 29.72467 * 19 17 15 22 22 H 1.48512 * 109.47100 * 149.72403 * 19 17 15 23 23 C 1.38239 * 119.99729 * 0.25801 * 6 5 4 24 24 C 1.38231 * 120.00046 * 359.48656 * 23 6 5 25 25 H 1.08993 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46899 * 300.00607 * 1 2 3 27 27 H 1.09005 * 109.46931 * 59.99971 * 1 2 3 28 28 H 1.08994 * 109.47110 * 239.99616 * 2 1 3 29 29 H 1.08998 * 109.46521 * 119.99954 * 2 1 3 30 30 H 1.08004 * 120.00283 * 0.02562 * 4 3 2 31 31 H 1.08008 * 119.99592 * 180.02562 * 5 4 3 32 32 H 1.08994 * 109.47397 * 330.00184 * 7 6 5 33 33 H 1.09005 * 109.47196 * 210.00260 * 7 6 5 34 34 H 1.09001 * 109.46676 * 269.98994 * 11 10 8 35 35 H 1.08990 * 109.47417 * 29.99379 * 11 10 8 36 36 H 1.08996 * 109.46736 * 149.99995 * 11 10 8 37 37 H 1.08998 * 109.47541 * 54.90089 * 14 12 10 38 38 H 1.08997 * 109.47518 * 174.90733 * 14 12 10 39 39 H 1.09004 * 109.47390 * 294.90389 * 14 12 10 40 40 H 0.97000 * 119.99814 * 355.27029 * 18 17 15 41 41 H 1.08002 * 119.99785 * 179.72685 * 23 6 5 42 42 H 1.08004 * 120.00063 * 180.25274 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3756 1.1970 6 6 2.9545 4.0272 0.0000 7 6 3.4569 5.4480 0.0000 8 6 4.9639 5.4479 -0.0001 9 8 5.5702 4.3975 -0.0006 10 7 5.6379 6.6151 -0.0006 11 6 4.9054 7.8838 -0.0006 12 6 7.1028 6.6149 -0.0001 13 1 7.4661 5.5872 0.0003 14 6 7.6125 7.3369 1.2489 15 6 7.6056 7.3245 -1.2308 16 1 6.9079 7.8099 -1.8972 17 6 8.9564 7.3542 -1.5060 18 7 9.4045 8.0537 -2.5255 19 14 10.1490 6.3948 -0.4353 20 1 10.6159 7.2564 0.6803 21 1 9.4655 5.1975 0.1167 22 1 11.3136 5.9675 -1.2518 23 6 2.7186 3.3774 -1.1972 24 6 2.2623 2.0726 -1.1972 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0831 1.5632 2.1325 31 1 2.9045 3.8846 2.1324 32 1 3.0936 5.9618 0.8899 33 1 3.0935 5.9618 -0.8901 34 1 4.7235 8.1983 -1.0283 35 1 3.9532 7.7536 0.5135 36 1 5.4947 8.6435 0.5128 37 1 7.1762 6.8791 2.1367 38 1 8.6986 7.2585 1.2962 39 1 7.3257 8.3876 1.2037 40 1 8.7803 8.4926 -3.1244 41 1 2.8944 3.8880 -2.1325 42 1 2.0818 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163836765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:52 Heat of formation + Delta-G solvation = -25.320274 kcal Electronic energy + Delta-G solvation = -21030.139931 eV Core-core repulsion = 17974.568193 eV Total energy + Delta-G solvation = -3055.571738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82289 -38.72318 -35.57522 -34.52493 -32.86721 -31.37672 -30.81270 -30.03039 -27.06266 -26.21237 -24.72259 -23.41547 -22.63776 -21.25562 -20.26467 -18.28703 -17.53982 -16.49747 -16.11620 -15.79011 -15.30537 -14.91965 -14.74046 -13.85027 -13.79201 -13.67218 -13.28948 -13.11641 -12.83898 -12.76331 -12.67013 -12.22099 -11.94955 -11.81919 -11.71055 -11.65005 -11.44276 -11.32589 -11.17310 -10.80296 -10.77658 -10.53159 -10.03545 -9.71672 -9.15098 -8.86927 -8.77625 -8.49573 -8.36107 -7.77446 -6.45765 -4.15032 1.43303 1.54947 3.29510 3.35465 3.48225 3.60703 3.68937 4.05156 4.45299 4.67988 4.78105 4.91561 5.03462 5.09284 5.17934 5.22119 5.30433 5.38394 5.41694 5.52585 5.61574 5.67211 5.69195 5.73181 5.86545 5.95141 5.99017 6.16011 6.18981 6.19616 6.30110 6.35556 6.51187 6.54087 6.68530 6.75190 6.88980 7.10912 7.18193 7.43326 7.84813 8.27908 8.36480 8.78081 8.97548 9.55318 10.91617 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028578 B = 0.003870 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.543095 B = 7233.656693 C = 7477.118777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.090 4.090 4 C -0.118 4.118 5 C -0.104 4.104 6 C -0.059 4.059 7 C -0.103 4.103 8 C 0.506 3.494 9 O -0.545 6.545 10 N -0.590 5.590 11 C 0.088 3.912 12 C 0.227 3.773 13 H 0.062 0.938 14 C -0.159 4.159 15 C -0.601 4.601 16 H 0.060 0.940 17 C 0.032 3.968 18 N -0.910 5.910 19 Si 1.049 2.951 20 H -0.282 1.282 21 H -0.275 1.275 22 H -0.288 1.288 23 C -0.102 4.102 24 C -0.117 4.117 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.030 0.970 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.267 0.733 41 H 0.119 0.881 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.739 -8.802 7.116 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.136 4.136 5 C -0.122 4.122 6 C -0.059 4.059 7 C -0.143 4.143 8 C 0.292 3.708 9 O -0.423 6.423 10 N -0.322 5.322 11 C -0.056 4.056 12 C 0.126 3.874 13 H 0.079 0.921 14 C -0.217 4.217 15 C -0.639 4.639 16 H 0.078 0.922 17 C -0.173 4.173 18 N -0.544 5.544 19 Si 0.879 3.121 20 H -0.209 1.209 21 H -0.200 1.200 22 H -0.214 1.214 23 C -0.120 4.120 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.137 0.863 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.785 -9.643 7.343 19.902 hybrid contribution -1.558 0.685 -0.373 1.743 sum -17.343 -8.958 6.970 20.727 Atomic orbital electron populations 1.21745 0.94953 1.01414 1.02152 1.20515 0.95938 0.92954 1.02701 1.19814 0.99909 0.96005 0.93296 1.20899 1.00650 0.94766 0.97303 1.20928 0.98992 0.94905 0.97353 1.19348 0.98054 0.95056 0.93488 1.20745 0.94161 0.94929 1.04470 1.20304 0.88948 0.84115 0.77392 1.90666 1.70054 1.31039 1.50534 1.47961 1.08424 1.04724 1.71061 1.21568 0.95534 0.87208 1.01304 1.19377 0.75153 0.98481 0.94429 0.92053 1.22406 1.00452 1.00958 0.97865 1.22261 0.94803 1.38171 1.08712 0.92155 1.25699 0.97196 0.95838 0.98572 1.70828 1.38048 1.30078 1.15449 0.83942 0.75984 0.76849 0.75354 1.20936 1.20043 1.21405 1.20980 0.98593 0.94885 0.97531 1.20921 1.00474 0.94723 0.97356 0.92628 0.92638 0.92601 0.91179 0.91220 0.86446 0.86411 0.88590 0.88499 0.93191 0.92670 0.90933 0.95069 0.92881 0.92850 0.92308 0.86265 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 37.16 0.37 -0.78 16 2 C -0.08 -0.79 6.06 -27.88 -0.17 -0.95 16 3 C -0.09 -1.10 5.13 -104.62 -0.54 -1.64 16 4 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 5 C -0.10 -1.44 9.70 -39.59 -0.38 -1.82 16 6 C -0.06 -0.89 4.37 -104.62 -0.46 -1.34 16 7 C -0.10 -1.51 4.38 -29.03 -0.13 -1.64 16 8 C 0.51 10.25 7.67 -10.98 -0.08 10.16 16 9 O -0.54 -13.32 15.36 5.56 0.09 -13.23 16 10 N -0.59 -12.32 2.75 -175.27 -0.48 -12.80 16 11 C 0.09 1.43 9.43 59.85 0.56 2.00 16 12 C 0.23 5.59 2.21 -69.09 -0.15 5.44 16 13 H 0.06 1.69 5.40 -51.93 -0.28 1.40 16 14 C -0.16 -3.44 8.65 37.16 0.32 -3.11 16 15 C -0.60 -16.81 8.77 -34.44 -0.30 -17.11 16 16 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 17 C 0.03 0.92 5.43 -17.82 -0.10 0.83 16 18 N -0.91 -27.95 13.70 55.43 0.76 -27.19 16 19 Si 1.05 26.02 25.28 -169.99 -4.30 21.73 16 20 H -0.28 -6.51 6.82 56.52 0.39 -6.13 16 21 H -0.27 -6.65 6.35 56.52 0.36 -6.29 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C -0.10 -1.48 9.70 -39.58 -0.38 -1.86 16 24 C -0.12 -1.52 9.70 -39.59 -0.38 -1.90 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.10 1.14 7.35 -51.93 -0.38 0.76 16 33 H 0.10 1.25 8.05 -51.93 -0.42 0.84 16 34 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.05 0.68 6.44 -51.93 -0.33 0.34 16 36 H 0.07 1.19 6.53 -51.93 -0.34 0.85 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 1.17 4.41 -51.93 -0.23 0.94 16 39 H 0.05 1.09 6.88 -51.93 -0.36 0.73 16 40 H 0.27 8.14 8.72 -40.82 -0.36 7.78 16 41 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -33.66 338.77 -7.64 -41.30 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.60 Total: 0.73 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -2.21 Total: -15.63 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.28 Total: -40.00 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -4.30 Total: 21.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.66 -7.64 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163836765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.979 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds