Wall clock time and date at job start Mon Mar 30 2020 02:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38232 * 119.99949 * 89.99779 * 3 2 1 5 5 C 1.38236 * 119.99591 * 179.97438 * 4 3 2 6 6 C 1.38228 * 120.00386 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00027 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46783 * 90.00389 * 7 6 5 9 9 O 1.21279 * 119.99993 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99848 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99715 * 0.02562 * 10 8 7 12 12 C 1.46496 * 119.99770 * 179.97438 * 10 8 7 13 13 H 1.09000 * 109.47080 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47161 * 240.00343 * 12 10 8 15 15 C 1.50696 * 109.46880 * 120.00257 * 12 10 8 16 16 H 1.08000 * 120.00131 * 5.37959 * 15 12 10 17 17 C 1.37882 * 119.99857 * 185.37666 * 15 12 10 18 18 N 1.31514 * 120.00102 * 184.90288 * 17 15 12 19 19 Si 1.86795 * 119.99950 * 5.17502 * 17 15 12 20 20 H 1.48493 * 109.47270 * 269.72359 * 19 17 15 21 21 H 1.48500 * 109.47231 * 29.72467 * 19 17 15 22 22 H 1.48512 * 109.47100 * 149.72403 * 19 17 15 23 23 C 1.38239 * 119.99729 * 0.25801 * 6 5 4 24 24 C 1.38231 * 120.00046 * 359.48656 * 23 6 5 25 25 H 1.08993 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46899 * 300.00607 * 1 2 3 27 27 H 1.09005 * 109.46931 * 59.99971 * 1 2 3 28 28 H 1.08994 * 109.47110 * 239.99616 * 2 1 3 29 29 H 1.08998 * 109.46521 * 119.99954 * 2 1 3 30 30 H 1.08004 * 120.00283 * 0.02562 * 4 3 2 31 31 H 1.08008 * 119.99592 * 180.02562 * 5 4 3 32 32 H 1.08994 * 109.47397 * 330.00184 * 7 6 5 33 33 H 1.09005 * 109.47196 * 210.00260 * 7 6 5 34 34 H 1.09001 * 109.46676 * 269.98994 * 11 10 8 35 35 H 1.08990 * 109.47417 * 29.99379 * 11 10 8 36 36 H 1.08996 * 109.46736 * 149.99995 * 11 10 8 37 37 H 1.08998 * 109.47541 * 54.90089 * 14 12 10 38 38 H 1.08997 * 109.47518 * 174.90733 * 14 12 10 39 39 H 1.09004 * 109.47390 * 294.90389 * 14 12 10 40 40 H 0.97000 * 119.99814 * 355.27029 * 18 17 15 41 41 H 1.08002 * 119.99785 * 179.72685 * 23 6 5 42 42 H 1.08004 * 120.00063 * 180.25274 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7241 3.3756 1.1970 6 6 2.9545 4.0272 0.0000 7 6 3.4569 5.4480 0.0000 8 6 4.9639 5.4479 -0.0001 9 8 5.5702 4.3975 -0.0006 10 7 5.6379 6.6151 -0.0006 11 6 4.9054 7.8838 -0.0006 12 6 7.1028 6.6149 -0.0001 13 1 7.4661 5.5872 0.0003 14 6 7.6125 7.3369 1.2489 15 6 7.6056 7.3245 -1.2308 16 1 6.9079 7.8099 -1.8972 17 6 8.9564 7.3542 -1.5060 18 7 9.4045 8.0537 -2.5255 19 14 10.1490 6.3948 -0.4353 20 1 10.6159 7.2564 0.6803 21 1 9.4655 5.1975 0.1167 22 1 11.3136 5.9675 -1.2518 23 6 2.7186 3.3774 -1.1972 24 6 2.2623 2.0726 -1.1972 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0831 1.5632 2.1325 31 1 2.9045 3.8846 2.1324 32 1 3.0936 5.9618 0.8899 33 1 3.0935 5.9618 -0.8901 34 1 4.7235 8.1983 -1.0283 35 1 3.9532 7.7536 0.5135 36 1 5.4947 8.6435 0.5128 37 1 7.1762 6.8791 2.1367 38 1 8.6986 7.2585 1.2962 39 1 7.3257 8.3876 1.2037 40 1 8.7803 8.4926 -3.1244 41 1 2.8944 3.8880 -2.1325 42 1 2.0818 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163836765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:51 Heat of formation + Delta-G solvation = -45.397571 kcal Electronic energy + Delta-G solvation = -21031.010548 eV Core-core repulsion = 17974.568193 eV Total energy + Delta-G solvation = -3056.442355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14120 -39.99064 -37.28456 -35.51948 -34.86104 -32.78085 -31.80427 -31.49048 -28.13916 -27.65363 -26.75589 -24.39201 -23.63545 -22.76146 -21.41100 -19.97764 -19.58356 -18.07809 -17.28450 -16.93862 -16.69606 -16.14369 -16.02303 -15.53704 -14.86441 -14.71878 -14.59766 -14.50566 -14.34744 -14.15293 -13.79490 -13.70695 -13.46790 -13.28268 -13.07459 -12.86876 -12.82418 -12.50051 -12.40706 -12.05501 -11.89094 -11.71091 -11.65797 -11.64431 -11.02340 -10.72982 -10.69364 -9.78823 -9.52621 -9.39576 -8.72148 -6.45556 0.41031 0.53620 1.36458 1.49764 1.65735 1.75491 2.29896 2.39213 2.89225 3.03741 3.69596 3.86992 3.89724 3.99119 4.14380 4.19421 4.36097 4.45719 4.48856 4.50778 4.56667 4.59559 4.61883 4.66299 4.72867 4.75260 4.78778 4.93172 5.05977 5.07922 5.09744 5.17938 5.23763 5.36751 5.40100 5.52348 5.68645 5.70566 5.73727 5.78434 5.98560 6.14947 6.51737 6.72448 7.27144 7.40349 8.60520 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028578 B = 0.003870 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.543095 B = 7233.656693 C = 7477.118777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.125 4.125 5 C -0.115 4.115 6 C -0.083 4.083 7 C -0.089 4.089 8 C 0.498 3.502 9 O -0.595 6.595 10 N -0.600 5.600 11 C 0.084 3.916 12 C 0.227 3.773 13 H 0.030 0.970 14 C -0.151 4.151 15 C -0.596 4.596 16 H 0.031 0.969 17 C -0.017 4.017 18 N -0.940 5.940 19 Si 1.083 2.917 20 H -0.249 1.249 21 H -0.271 1.271 22 H -0.290 1.290 23 C -0.123 4.123 24 C -0.128 4.128 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.254 0.746 41 H 0.117 0.883 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.369 -9.508 9.263 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.143 4.143 5 C -0.133 4.133 6 C -0.083 4.083 7 C -0.128 4.128 8 C 0.288 3.712 9 O -0.476 6.476 10 N -0.331 5.331 11 C -0.059 4.059 12 C 0.123 3.877 13 H 0.048 0.952 14 C -0.209 4.209 15 C -0.635 4.635 16 H 0.049 0.951 17 C -0.215 4.215 18 N -0.577 5.577 19 Si 0.907 3.093 20 H -0.174 1.174 21 H -0.196 1.196 22 H -0.216 1.216 23 C -0.141 4.141 24 C -0.146 4.146 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.135 0.865 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.461 -10.310 9.500 22.392 hybrid contribution -1.161 0.854 -1.105 1.816 sum -18.622 -9.456 8.394 22.509 Atomic orbital electron populations 1.21716 0.93711 1.02454 1.01995 1.20581 0.96925 0.91149 1.03410 1.20202 0.98806 0.97306 0.92903 1.21244 1.00049 0.94562 0.98474 1.21196 0.98940 0.95606 0.97529 1.19497 0.99273 0.95503 0.94073 1.20722 0.89440 0.95758 1.06894 1.21290 0.91230 0.82967 0.75756 1.90632 1.71604 1.32755 1.52624 1.48051 1.07244 1.06747 1.71037 1.21816 0.97257 0.85176 1.01623 1.19068 0.78006 0.96386 0.94223 0.95179 1.22247 1.00201 1.01346 0.97076 1.22451 0.94348 1.37141 1.09517 0.95073 1.26945 0.99484 0.96046 0.99055 1.70937 1.37872 1.32134 1.16714 0.83510 0.74274 0.76418 0.75122 1.17386 1.19633 1.21627 1.21169 0.99476 0.95824 0.97614 1.21192 1.00376 0.94443 0.98608 0.91007 0.92611 0.92960 0.90734 0.90290 0.84181 0.85113 0.85076 0.86789 0.93962 0.87725 0.90957 0.92561 0.93302 0.91767 0.93704 0.86527 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.90 71.98 0.71 -1.19 16 2 C -0.08 -1.38 6.06 29.85 0.18 -1.20 16 3 C -0.09 -2.11 5.13 -19.87 -0.10 -2.21 16 4 C -0.13 -2.92 9.70 22.27 0.22 -2.70 16 5 C -0.11 -2.99 9.70 22.27 0.22 -2.77 16 6 C -0.08 -2.39 4.37 -19.87 -0.09 -2.48 16 7 C -0.09 -2.42 4.38 29.10 0.13 -2.29 16 8 C 0.50 19.77 7.67 87.66 0.67 20.45 16 9 O -0.59 -29.35 15.36 -3.03 -0.05 -29.40 16 10 N -0.60 -24.46 2.75 -826.82 -2.28 -26.73 16 11 C 0.08 2.55 9.43 127.77 1.20 3.76 16 12 C 0.23 11.09 2.21 44.24 0.10 11.19 16 13 H 0.03 1.68 5.40 -2.39 -0.01 1.66 16 14 C -0.15 -6.23 8.65 71.98 0.62 -5.61 16 15 C -0.60 -33.95 8.77 25.60 0.22 -33.73 16 16 H 0.03 1.91 7.74 -2.91 -0.02 1.88 16 17 C -0.02 -0.99 5.43 84.66 0.46 -0.53 16 18 N -0.94 -59.19 13.70 21.45 0.29 -58.89 16 19 Si 1.08 52.43 25.28 68.60 1.73 54.17 16 20 H -0.25 -10.68 6.82 99.48 0.68 -10.00 16 21 H -0.27 -12.86 6.35 99.48 0.63 -12.23 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 C -0.12 -3.53 9.70 22.27 0.22 -3.31 16 24 C -0.13 -3.24 9.70 22.27 0.22 -3.02 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 29 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 30 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 31 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.13 2.60 7.35 -2.39 -0.02 2.58 16 33 H 0.11 2.70 8.05 -2.38 -0.02 2.68 16 34 H 0.04 1.35 8.09 -2.39 -0.02 1.33 16 35 H 0.10 2.14 6.44 -2.39 -0.02 2.13 16 36 H 0.07 2.21 6.53 -2.39 -0.02 2.19 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.05 2.04 4.41 -2.39 -0.01 2.03 16 39 H 0.06 2.49 6.88 -2.38 -0.02 2.47 16 40 H 0.25 16.10 8.72 -92.71 -0.81 15.29 16 41 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -75.46 338.77 5.53 -69.93 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.85 Total: 16.58 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 4.98 Total: -25.66 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.98 Total: -85.62 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.05 Total: -29.40 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 1.73 Total: 54.17 kcal Total: -75.46 5.53 -69.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163836765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.532 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds