Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47568 * 2 1 4 4 C 1.53004 * 109.46746 * 304.87307 * 3 2 1 5 5 C 1.53003 * 109.46997 * 295.12751 * 4 3 2 6 6 C 1.52998 * 109.47102 * 64.86769 * 3 2 1 7 7 C 1.50708 * 109.46774 * 65.00567 * 6 3 2 8 8 O 1.21278 * 119.99781 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99993 * 179.97438 * 7 6 3 10 10 C 1.39229 * 120.00333 * 185.31481 * 9 7 6 11 11 C 1.39483 * 119.83377 * 324.30174 * 10 9 7 12 12 C 1.36373 * 120.17191 * 180.29040 * 11 10 9 13 13 C 1.40871 * 119.82498 * 359.48612 * 12 11 10 14 14 C 1.41157 * 120.16359 * 180.24933 * 13 12 11 15 15 H 1.08002 * 119.99638 * 212.98439 * 14 13 12 16 16 C 1.39901 * 120.00239 * 32.98203 * 14 13 12 17 17 N 1.30876 * 119.99585 * 6.73675 * 16 14 13 18 18 Si 1.86797 * 120.00356 * 186.74231 * 16 14 13 19 19 H 1.48504 * 109.46830 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47222 * 119.99837 * 18 16 14 21 21 H 1.48497 * 109.46958 * 240.00165 * 18 16 14 22 22 C 1.40871 * 119.67176 * 0.51039 * 13 12 11 23 23 C 1.36372 * 119.83063 * 359.73686 * 22 13 12 24 24 H 1.09000 * 109.47026 * 185.33520 * 1 2 3 25 25 H 1.08999 * 109.46667 * 305.33761 * 1 2 3 26 26 H 1.09003 * 109.46621 * 65.33529 * 1 2 3 27 27 H 1.09002 * 109.47168 * 239.99220 * 2 1 3 28 28 H 1.09005 * 109.46938 * 119.99839 * 2 1 3 29 29 H 1.08998 * 109.47223 * 184.87394 * 3 2 1 30 30 H 1.08998 * 109.47332 * 55.12897 * 4 3 2 31 31 H 1.09003 * 109.46903 * 175.12800 * 4 3 2 32 32 H 1.09000 * 109.46421 * 185.19837 * 5 4 3 33 33 H 1.08996 * 109.47116 * 305.19854 * 5 4 3 34 34 H 1.08996 * 109.46849 * 65.20297 * 5 4 3 35 35 H 1.08993 * 109.47574 * 305.00834 * 6 3 2 36 36 H 1.09001 * 109.47204 * 184.99680 * 6 3 2 37 37 H 0.97000 * 119.99785 * 5.31909 * 9 7 6 38 38 H 1.07999 * 119.91502 * 0.02562 * 11 10 9 39 39 H 1.08003 * 120.08895 * 179.69603 * 12 11 10 40 40 H 0.97002 * 119.99577 * 179.97438 * 17 16 14 41 41 H 1.08000 * 120.08285 * 179.71798 * 22 13 12 42 42 H 1.07993 * 119.91831 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4325 2.1982 -1.1835 5 6 1.9376 1.5872 -2.4922 6 6 1.6326 2.1275 1.3059 7 6 2.3292 1.4583 2.4628 8 8 3.0774 0.5252 2.2624 9 7 2.1206 1.8970 3.7200 10 6 2.8464 1.3534 4.7764 11 6 3.1814 -0.0006 4.7641 12 6 3.8871 -0.5415 5.7982 13 6 4.2872 0.2734 6.8754 14 6 5.0224 -0.2779 7.9468 15 1 4.8894 0.1066 8.9473 16 6 5.9233 -1.3224 7.7129 17 7 6.1832 -1.7000 6.4870 18 14 6.7551 -2.1780 9.1500 19 1 6.2949 -1.5676 10.4231 20 1 6.4046 -3.6210 9.1371 21 1 8.2275 -2.0252 9.0321 22 6 3.9452 1.6399 6.8807 23 6 3.2348 2.1654 5.8420 24 1 -0.3633 -1.0232 0.0956 25 1 -0.3632 0.5944 0.8383 26 1 -0.3633 0.4289 -0.9340 27 1 1.8934 -0.5140 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.1266 1.4436 -0.0873 30 1 0.3459 2.1233 -1.1432 31 1 1.7266 3.2466 -1.1347 32 1 1.5792 2.1816 -3.3326 33 1 3.0275 1.5782 -2.4921 34 1 1.5657 0.5668 -2.5841 35 1 0.5534 2.0481 1.4365 36 1 1.9179 3.1789 1.2691 37 1 1.4646 2.5914 3.8888 38 1 2.8774 -0.6231 3.9356 39 1 4.1415 -1.5911 5.7896 40 1 6.8081 -2.4240 6.3248 41 1 4.2446 2.2697 7.7053 42 1 2.9722 3.2129 5.8444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164482548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = -58.617747 kcal Electronic energy + Delta-G solvation = -20963.414938 eV Core-core repulsion = 17906.399313 eV Total energy + Delta-G solvation = -3057.015625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32751 -39.36472 -37.87595 -36.08064 -34.67663 -32.07091 -31.62044 -31.28685 -30.26851 -27.09740 -25.61724 -24.32158 -23.24060 -22.71733 -21.06536 -19.90615 -19.21767 -18.29451 -17.67990 -17.01671 -16.90093 -16.22207 -15.78570 -15.39056 -15.18377 -14.90594 -14.51947 -14.26287 -13.92962 -13.72994 -13.61510 -13.50906 -13.36528 -12.91254 -12.80410 -12.78625 -12.61606 -12.33352 -12.23422 -11.92986 -11.74051 -11.66779 -11.39084 -11.33051 -11.21439 -11.13468 -10.57863 -10.35812 -9.45657 -8.76433 -8.54677 -6.30824 0.83055 1.12548 1.37713 1.43928 1.53632 1.87924 2.22398 2.44491 2.81059 3.69903 3.80863 3.87869 3.98598 4.25872 4.41949 4.44760 4.46175 4.49247 4.59795 4.65136 4.70984 4.81063 4.98424 4.99888 5.01795 5.11774 5.12825 5.17079 5.19110 5.31634 5.35191 5.37741 5.41239 5.45129 5.55619 5.69926 5.71286 5.88046 6.09797 6.12937 6.36008 6.69712 6.80406 6.95156 7.01884 7.51800 8.41807 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031917 B = 0.003556 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.051319 B = 7872.117054 C = 8333.592249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.070 4.070 4 C -0.114 4.114 5 C -0.154 4.154 6 C -0.125 4.125 7 C 0.492 3.508 8 O -0.572 6.572 9 N -0.649 5.649 10 C 0.019 3.981 11 C -0.106 4.106 12 C -0.168 4.168 13 C 0.070 3.930 14 C -0.498 4.498 15 H 0.080 0.920 16 C 0.024 3.976 17 N -0.845 5.845 18 Si 0.989 3.011 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.269 1.269 22 C -0.214 4.214 23 C -0.106 4.106 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.418 0.582 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.283 0.717 41 H 0.111 0.889 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.245 8.515 -12.038 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.089 4.089 4 C -0.151 4.151 5 C -0.211 4.211 6 C -0.165 4.165 7 C 0.281 3.719 8 O -0.451 6.451 9 N -0.295 5.295 10 C -0.074 4.074 11 C -0.127 4.127 12 C -0.189 4.189 13 C 0.068 3.932 14 C -0.529 4.529 15 H 0.098 0.902 16 C -0.188 4.188 17 N -0.473 5.473 18 Si 0.809 3.191 19 H -0.177 1.177 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.234 4.234 23 C -0.126 4.126 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.256 0.744 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.129 0.871 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.595 7.732 -12.354 18.019 hybrid contribution 0.654 -0.637 0.725 1.166 sum -9.941 7.096 -11.629 16.864 Atomic orbital electron populations 1.21869 0.94656 1.01475 1.02623 1.21618 0.96885 0.96739 1.01300 1.20916 0.99542 0.94927 0.93540 1.21604 1.01447 0.99277 0.92805 1.21799 1.00690 1.01153 0.97469 1.21850 1.02485 1.01409 0.90726 1.21713 0.81780 0.83708 0.84678 1.90677 1.39309 1.29996 1.85101 1.43010 1.40398 1.41027 1.05058 1.17357 1.06123 0.91982 0.91979 1.20627 1.00288 0.94420 0.97332 1.20921 1.01841 0.99300 0.96788 1.18027 0.90234 0.91787 0.93179 1.19798 1.20981 1.16452 0.95679 0.90205 1.26834 0.96561 0.96027 0.99344 1.69935 1.29677 1.24880 1.22817 0.85063 0.77875 0.78057 0.78069 1.17662 1.19288 1.19349 1.20936 1.07179 0.94542 1.00766 1.20459 0.99430 0.98591 0.94144 0.93619 0.92262 0.90634 0.92418 0.93931 0.93308 0.89917 0.90882 0.91475 0.93844 0.92873 0.86144 0.86345 0.74431 0.88541 0.88950 0.90698 0.87070 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.12 71.98 0.66 -2.17 16 2 C -0.13 -3.20 5.13 30.59 0.16 -3.04 16 3 C -0.07 -1.55 1.81 -10.79 -0.02 -1.57 16 4 C -0.11 -1.71 5.08 30.60 0.16 -1.55 16 5 C -0.15 -2.36 9.54 71.98 0.69 -1.68 16 6 C -0.13 -2.56 5.05 29.85 0.15 -2.41 16 7 C 0.49 16.27 7.35 87.66 0.64 16.91 16 8 O -0.57 -25.21 11.40 -3.02 -0.03 -25.24 16 9 N -0.65 -21.16 5.30 -303.11 -1.61 -22.76 16 10 C 0.02 0.84 6.30 38.57 0.24 1.09 16 11 C -0.11 -5.55 8.62 22.13 0.19 -5.36 16 12 C -0.17 -9.65 8.57 22.48 0.19 -9.45 16 13 C 0.07 3.93 5.52 -21.27 -0.12 3.82 16 14 C -0.50 -27.81 9.03 23.39 0.21 -27.60 16 15 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 16 C 0.02 1.29 5.30 85.24 0.45 1.74 16 17 N -0.85 -48.05 10.92 21.82 0.24 -47.81 16 18 Si 0.99 40.35 29.57 68.60 2.03 42.38 16 19 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 22 C -0.21 -10.42 9.74 22.48 0.22 -10.20 16 23 C -0.11 -4.48 9.90 22.13 0.22 -4.26 16 24 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 1.04 6.23 -2.39 -0.01 1.02 16 26 H 0.07 1.09 6.56 -2.39 -0.02 1.08 16 27 H 0.06 1.40 6.93 -2.39 -0.02 1.39 16 28 H 0.04 1.43 5.88 -2.38 -0.01 1.42 16 29 H 0.05 1.36 7.96 -2.39 -0.02 1.34 16 30 H 0.08 0.99 6.19 -2.39 -0.01 0.98 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.85 6.94 -2.39 -0.02 0.83 16 35 H 0.12 1.81 6.24 -2.39 -0.01 1.80 16 36 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.42 9.52 8.82 -92.71 -0.82 8.71 16 38 H 0.10 5.15 6.22 -2.91 -0.02 5.13 16 39 H 0.09 5.66 6.40 -2.91 -0.02 5.65 16 40 H 0.28 14.69 8.30 -92.71 -0.77 13.92 16 41 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -71.04 331.88 4.87 -66.17 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.20 Total: 33.01 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 4.04 Total: -45.74 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.37 Total: -70.58 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.03 Total: -25.24 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -71.04 4.87 -66.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164482548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.548 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds