Wall clock time and date at job start Mon Mar 30 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00441 * 2 1 4 4 C 1.50708 * 109.46998 * 270.00186 * 3 2 1 5 5 H 1.08005 * 119.99799 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99915 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00008 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99989 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47219 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47318 * 119.99790 * 8 6 4 11 11 H 1.48501 * 109.47232 * 240.00096 * 8 6 4 12 12 C 1.34777 * 119.99944 * 179.97438 * 2 1 3 13 13 O 1.21549 * 120.00076 * 183.53730 * 12 2 1 14 14 C 1.47847 * 119.99687 * 3.53208 * 12 2 1 15 15 C 1.39590 * 120.14793 * 284.44058 * 14 12 2 16 16 C 1.37933 * 119.85683 * 180.02562 * 15 14 12 17 17 C 1.38383 * 120.14520 * 359.97438 * 16 15 14 18 18 C 1.38342 * 120.28851 * 359.72278 * 17 16 15 19 19 C 1.37976 * 120.14679 * 0.55764 * 18 17 16 20 20 C 1.50703 * 120.07551 * 179.71688 * 19 18 17 21 21 C 1.52999 * 109.46906 * 7.05032 * 20 19 18 22 22 C 1.53001 * 109.46762 * 127.04937 * 20 19 18 23 23 C 1.53005 * 109.47007 * 247.04815 * 20 19 18 24 24 H 1.09001 * 109.47004 * 274.85845 * 1 2 3 25 25 H 1.09003 * 109.46522 * 34.85155 * 1 2 3 26 26 H 1.09000 * 109.47342 * 154.85047 * 1 2 3 27 27 H 1.09001 * 109.46662 * 29.99409 * 3 2 1 28 28 H 1.08996 * 109.47663 * 150.00044 * 3 2 1 29 29 H 0.97002 * 119.99556 * 179.97438 * 7 6 4 30 30 H 1.08008 * 120.07115 * 0.02562 * 15 14 12 31 31 H 1.07995 * 119.93259 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.85835 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.92514 * 180.27646 * 18 17 16 34 34 H 1.08994 * 109.46829 * 59.99711 * 21 20 19 35 35 H 1.09000 * 109.46773 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.47325 * 299.99666 * 21 20 19 37 37 H 1.09001 * 109.47313 * 65.93265 * 22 20 19 38 38 H 1.09000 * 109.46720 * 185.92443 * 22 20 19 39 39 H 1.08996 * 109.47199 * 305.93015 * 22 20 19 40 40 H 1.09004 * 109.47143 * 62.43222 * 23 20 19 41 41 H 1.09000 * 109.46530 * 182.42589 * 23 20 19 42 42 H 1.08993 * 109.47128 * 302.42789 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2418 6 6 3.1261 2.8779 -1.6728 7 7 3.5527 3.6184 -0.6732 8 14 3.4381 3.4167 -3.4340 9 1 2.8620 2.4156 -4.3674 10 1 2.8001 4.7370 -3.6681 11 1 4.9007 3.5255 -3.6667 12 6 2.1389 -1.1672 0.0005 13 8 3.3526 -1.1682 0.0655 14 6 1.4017 -2.4464 -0.0778 15 6 0.7293 -2.9378 1.0425 16 6 0.0438 -4.1321 0.9628 17 6 0.0213 -4.8426 -0.2244 18 6 0.6804 -4.3581 -1.3401 19 6 1.3746 -3.1676 -1.2723 20 6 2.0972 -2.6445 -2.4869 21 6 1.7612 -3.5193 -3.6963 22 6 1.6578 -1.2048 -2.7610 23 6 3.6063 -2.6783 -2.2364 24 1 -0.3633 0.0870 1.0240 25 1 -0.3632 0.8434 -0.5873 26 1 -0.3634 -0.9302 -0.4367 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5138 29 1 4.0296 4.4443 -0.8506 30 1 0.7458 -2.3840 1.9696 31 1 -0.4764 -4.5136 1.8289 32 1 -0.5172 -5.7770 -0.2817 33 1 0.6552 -4.9152 -2.2650 34 1 0.6862 -3.4952 -3.8746 35 1 2.2836 -3.1407 -4.5749 36 1 2.0742 -4.5450 -3.5010 37 1 1.9907 -0.5619 -1.9461 38 1 2.0989 -0.8624 -3.6971 39 1 0.5712 -1.1644 -2.8350 40 1 3.9262 -3.7091 -2.0838 41 1 4.1269 -2.2600 -3.0978 42 1 3.8405 -2.0900 -1.3493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167007142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:47 Heat of formation + Delta-G solvation = -2.775559 kcal Electronic energy + Delta-G solvation = -22696.092901 eV Core-core repulsion = 19641.498775 eV Total energy + Delta-G solvation = -3054.594126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52310 -38.04221 -36.02977 -34.89600 -32.65925 -31.09164 -29.87557 -27.79703 -27.11336 -26.69614 -25.85924 -23.89156 -22.55117 -21.99539 -19.37936 -18.63782 -16.95599 -16.59289 -15.74882 -15.58311 -15.28052 -14.43263 -14.32067 -14.06170 -13.79371 -13.72620 -13.30718 -12.83225 -12.49798 -12.26518 -12.14979 -11.96175 -11.80971 -11.72675 -11.63740 -11.33672 -11.31722 -11.21754 -10.78850 -10.62522 -10.53169 -10.40828 -10.07573 -9.97315 -9.42069 -8.93244 -8.73422 -8.51025 -8.43594 -7.60296 -6.06059 -4.10765 1.32185 1.49611 3.26929 3.28494 3.36844 3.40454 3.75452 4.02950 4.43175 4.78525 4.90828 5.03284 5.08432 5.26871 5.30172 5.33213 5.47624 5.61409 5.64176 5.72026 5.87837 5.95424 5.99306 6.02087 6.11402 6.17443 6.24196 6.29928 6.33289 6.44879 6.50918 6.52279 6.66972 6.73175 6.98321 7.04675 7.07028 7.11098 7.43186 7.56011 7.91664 8.19761 8.33421 8.86137 9.02983 9.54872 11.02165 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.006626 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.670638 B = 4224.466471 C = 4927.642080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.595 5.595 3 C 0.242 3.758 4 C -0.534 4.534 5 H 0.072 0.928 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.893 3.107 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.555 3.445 13 O -0.526 6.526 14 C -0.107 4.107 15 C -0.091 4.091 16 C -0.131 4.131 17 C -0.112 4.112 18 C -0.127 4.127 19 C -0.030 4.030 20 C -0.032 4.032 21 C -0.140 4.140 22 C -0.172 4.172 23 C -0.173 4.173 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.262 0.738 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.867 -14.342 -0.516 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.326 5.326 3 C 0.123 3.877 4 C -0.572 4.572 5 H 0.090 0.910 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.343 3.657 13 O -0.405 6.405 14 C -0.110 4.110 15 C -0.110 4.110 16 C -0.149 4.149 17 C -0.131 4.131 18 C -0.145 4.145 19 C -0.030 4.030 20 C -0.032 4.032 21 C -0.197 4.197 22 C -0.229 4.229 23 C -0.229 4.229 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.140 -14.116 -0.434 16.300 hybrid contribution 0.034 0.331 -1.032 1.085 sum -8.105 -13.784 -1.467 16.058 Atomic orbital electron populations 1.21676 0.81221 1.02504 1.00783 1.48202 1.06368 1.07498 1.70526 1.19372 0.92663 0.77841 0.97820 1.21679 1.36553 1.06494 0.92511 0.90977 1.24919 0.95373 0.96404 0.97213 1.69948 1.38332 1.14291 1.30632 0.86514 0.78136 0.78444 0.84825 1.19660 1.20991 1.20878 1.18073 0.87242 0.83419 0.76967 1.90579 1.13363 1.86717 1.49839 1.20021 0.99675 0.96773 0.94545 1.21137 0.96034 0.96289 0.97541 1.20987 1.00541 0.95341 0.98013 1.21189 0.99265 0.99535 0.93070 1.21098 0.98486 0.95982 0.98936 1.19920 0.95619 0.93690 0.93805 1.19582 0.96005 0.96272 0.91375 1.21975 1.01090 0.99140 0.97537 1.22608 1.00365 0.94976 1.04971 1.22539 0.92668 1.02121 1.05586 0.93595 0.90829 0.92117 0.94833 0.93601 0.92795 0.85842 0.86001 0.86219 0.85441 0.92734 0.92428 0.92748 0.86950 0.92688 0.93558 0.93865 0.93010 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.09 59.85 0.60 1.96 16 2 N -0.59 -12.45 1.96 -184.07 -0.36 -12.81 16 3 C 0.24 6.15 5.21 -5.19 -0.03 6.12 16 4 C -0.53 -14.46 8.82 -34.44 -0.30 -14.77 16 5 H 0.07 1.90 5.18 -52.48 -0.27 1.63 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 8 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.56 11.64 3.84 -12.33 -0.05 11.60 16 13 O -0.53 -12.96 13.34 5.32 0.07 -12.89 16 14 C -0.11 -1.84 3.68 -104.97 -0.39 -2.23 16 15 C -0.09 -1.31 9.24 -39.19 -0.36 -1.67 16 16 C -0.13 -1.54 10.03 -39.64 -0.40 -1.94 16 17 C -0.11 -1.28 10.04 -39.49 -0.40 -1.68 16 18 C -0.13 -1.65 9.00 -39.64 -0.36 -2.01 16 19 C -0.03 -0.47 4.77 -104.22 -0.50 -0.97 16 20 C -0.03 -0.53 0.75 -155.66 -0.12 -0.65 16 21 C -0.14 -1.84 7.16 37.16 0.27 -1.58 16 22 C -0.17 -3.22 7.08 37.16 0.26 -2.96 16 23 C -0.17 -3.14 8.32 37.16 0.31 -2.83 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 26 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16 27 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.05 1.32 7.37 -51.93 -0.38 0.93 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.40 5.91 -52.49 -0.31 1.09 16 34 H 0.05 0.65 7.84 -51.93 -0.41 0.24 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.63 7.19 -51.93 -0.37 0.26 16 37 H 0.11 2.43 1.73 -51.93 -0.09 2.34 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.11 2.43 3.85 -52.53 -0.20 2.23 16 LS Contribution 326.01 15.07 4.91 4.91 Total: -1.00 -30.72 326.01 -7.36 -38.08 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.15 Total: 3.51 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.55 Total: -11.93 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.37 Total: -38.14 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.89 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.72 -7.36 -38.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167007142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.308 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds