Wall clock time and date at job start Mon Mar 30 2020 02:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 120.00441 * 2 1 4 4 C 1.50708 * 109.46998 * 270.00186 * 3 2 1 5 5 H 1.08005 * 119.99799 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99915 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00008 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99989 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47219 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47318 * 119.99790 * 8 6 4 11 11 H 1.48501 * 109.47232 * 240.00096 * 8 6 4 12 12 C 1.34777 * 119.99944 * 179.97438 * 2 1 3 13 13 O 1.21549 * 120.00076 * 183.53730 * 12 2 1 14 14 C 1.47847 * 119.99687 * 3.53208 * 12 2 1 15 15 C 1.39590 * 120.14793 * 284.44058 * 14 12 2 16 16 C 1.37933 * 119.85683 * 180.02562 * 15 14 12 17 17 C 1.38383 * 120.14520 * 359.97438 * 16 15 14 18 18 C 1.38342 * 120.28851 * 359.72278 * 17 16 15 19 19 C 1.37976 * 120.14679 * 0.55764 * 18 17 16 20 20 C 1.50703 * 120.07551 * 179.71688 * 19 18 17 21 21 C 1.52999 * 109.46906 * 7.05032 * 20 19 18 22 22 C 1.53001 * 109.46762 * 127.04937 * 20 19 18 23 23 C 1.53005 * 109.47007 * 247.04815 * 20 19 18 24 24 H 1.09001 * 109.47004 * 274.85845 * 1 2 3 25 25 H 1.09003 * 109.46522 * 34.85155 * 1 2 3 26 26 H 1.09000 * 109.47342 * 154.85047 * 1 2 3 27 27 H 1.09001 * 109.46662 * 29.99409 * 3 2 1 28 28 H 1.08996 * 109.47663 * 150.00044 * 3 2 1 29 29 H 0.97002 * 119.99556 * 179.97438 * 7 6 4 30 30 H 1.08008 * 120.07115 * 0.02562 * 15 14 12 31 31 H 1.07995 * 119.93259 * 179.97438 * 16 15 14 32 32 H 1.07996 * 119.85835 * 180.02562 * 17 16 15 33 33 H 1.08001 * 119.92514 * 180.27646 * 18 17 16 34 34 H 1.08994 * 109.46829 * 59.99711 * 21 20 19 35 35 H 1.09000 * 109.46773 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.47325 * 299.99666 * 21 20 19 37 37 H 1.09001 * 109.47313 * 65.93265 * 22 20 19 38 38 H 1.09000 * 109.46720 * 185.92443 * 22 20 19 39 39 H 1.08996 * 109.47199 * 305.93015 * 22 20 19 40 40 H 1.09004 * 109.47143 * 62.43222 * 23 20 19 41 41 H 1.09000 * 109.46530 * 182.42589 * 23 20 19 42 42 H 1.08993 * 109.47128 * 302.42789 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2418 6 6 3.1261 2.8779 -1.6728 7 7 3.5527 3.6184 -0.6732 8 14 3.4381 3.4167 -3.4340 9 1 2.8620 2.4156 -4.3674 10 1 2.8001 4.7370 -3.6681 11 1 4.9007 3.5255 -3.6667 12 6 2.1389 -1.1672 0.0005 13 8 3.3526 -1.1682 0.0655 14 6 1.4017 -2.4464 -0.0778 15 6 0.7293 -2.9378 1.0425 16 6 0.0438 -4.1321 0.9628 17 6 0.0213 -4.8426 -0.2244 18 6 0.6804 -4.3581 -1.3401 19 6 1.3746 -3.1676 -1.2723 20 6 2.0972 -2.6445 -2.4869 21 6 1.7612 -3.5193 -3.6963 22 6 1.6578 -1.2048 -2.7610 23 6 3.6063 -2.6783 -2.2364 24 1 -0.3633 0.0870 1.0240 25 1 -0.3632 0.8434 -0.5873 26 1 -0.3634 -0.9302 -0.4367 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5138 29 1 4.0296 4.4443 -0.8506 30 1 0.7458 -2.3840 1.9696 31 1 -0.4764 -4.5136 1.8289 32 1 -0.5172 -5.7770 -0.2817 33 1 0.6552 -4.9152 -2.2650 34 1 0.6862 -3.4952 -3.8746 35 1 2.2836 -3.1407 -4.5749 36 1 2.0742 -4.5450 -3.5010 37 1 1.9907 -0.5619 -1.9461 38 1 2.0989 -0.8624 -3.6971 39 1 0.5712 -1.1644 -2.8350 40 1 3.9262 -3.7091 -2.0838 41 1 4.1269 -2.2600 -3.0978 42 1 3.8405 -2.0900 -1.3493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167007142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:46 Heat of formation + Delta-G solvation = -19.735608 kcal Electronic energy + Delta-G solvation = -22696.828344 eV Core-core repulsion = 19641.498775 eV Total energy + Delta-G solvation = -3055.329569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86535 -39.43869 -37.20645 -36.64889 -34.70215 -32.30236 -30.98048 -29.64867 -28.29431 -28.12408 -27.39926 -25.57726 -23.72908 -23.42257 -20.72347 -19.99571 -18.67223 -18.27149 -17.37371 -16.98827 -16.66363 -16.16793 -15.52732 -15.34898 -15.04077 -15.02210 -14.68237 -14.33117 -14.11076 -13.75823 -13.58774 -13.45819 -13.16953 -13.10846 -12.98724 -12.86187 -12.76499 -12.57693 -12.54870 -12.38486 -11.97352 -11.81664 -11.72518 -11.52426 -11.06249 -10.63162 -10.55157 -9.78501 -9.59098 -9.35471 -8.20247 -6.32809 0.25057 0.48073 1.35149 1.37500 1.48513 1.72784 2.30282 2.44461 2.83597 3.10252 3.59150 3.72775 3.87564 4.11913 4.15306 4.27216 4.35529 4.39379 4.56156 4.59329 4.66202 4.76207 4.77109 4.86824 4.89316 4.91582 4.95486 5.03147 5.12253 5.12663 5.17940 5.23849 5.29566 5.44378 5.53282 5.55574 5.61209 5.63741 5.78923 5.88321 6.07061 6.08318 6.68050 6.78080 7.29559 7.44097 8.87604 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.006626 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.670638 B = 4224.466471 C = 4927.642080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.599 5.599 3 C 0.258 3.742 4 C -0.540 4.540 5 H 0.077 0.923 6 C 0.009 3.991 7 N -0.930 5.930 8 Si 0.958 3.042 9 H -0.264 1.264 10 H -0.272 1.272 11 H -0.284 1.284 12 C 0.555 3.445 13 O -0.577 6.577 14 C -0.132 4.132 15 C -0.100 4.100 16 C -0.120 4.120 17 C -0.098 4.098 18 C -0.123 4.123 19 C -0.047 4.047 20 C -0.032 4.032 21 C -0.133 4.133 22 C -0.173 4.173 23 C -0.173 4.173 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.023 0.977 28 H 0.000 1.000 29 H 0.265 0.735 30 H 0.124 0.876 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.532 -17.453 -1.652 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C 0.137 3.863 4 C -0.579 4.579 5 H 0.095 0.905 6 C -0.190 4.190 7 N -0.570 5.570 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.197 1.197 11 H -0.211 1.211 12 C 0.345 3.655 13 O -0.459 6.459 14 C -0.135 4.135 15 C -0.119 4.119 16 C -0.137 4.137 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.048 4.048 20 C -0.032 4.032 21 C -0.190 4.190 22 C -0.230 4.230 23 C -0.229 4.229 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.041 0.959 28 H 0.018 0.982 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.175 0.825 32 H 0.179 0.821 33 H 0.171 0.829 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.852 -17.242 -1.569 20.433 hybrid contribution 0.843 1.221 -0.590 1.597 sum -10.009 -16.021 -2.159 19.013 Atomic orbital electron populations 1.21848 0.78408 1.03355 1.02373 1.48127 1.08026 1.06162 1.70638 1.18823 0.91027 0.79857 0.96594 1.22006 1.36098 1.06414 0.93339 0.90511 1.25795 0.95241 0.96632 1.01320 1.70071 1.39308 1.14838 1.32808 0.85508 0.77778 0.78517 0.79954 1.18792 1.19678 1.21050 1.18750 0.86832 0.84629 0.75279 1.90555 1.15889 1.87639 1.51843 1.19762 1.01744 0.95319 0.96672 1.21271 0.96345 0.97656 0.96638 1.21383 0.99056 0.93715 0.99582 1.21686 0.97665 1.00366 0.91862 1.21396 0.97356 0.94607 1.00725 1.19933 0.96962 0.95095 0.92797 1.19535 0.94458 0.95528 0.93656 1.21920 1.02236 0.99317 0.95563 1.22535 1.00949 0.96475 1.03049 1.22462 0.94781 1.02199 1.03498 0.91334 0.91272 0.90094 0.95889 0.98225 0.92646 0.85774 0.82524 0.82112 0.82896 0.91001 0.92621 0.90713 0.90023 0.93792 0.92348 0.92328 0.93695 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.71 10.09 127.77 1.29 4.00 16 2 N -0.60 -26.18 1.96 -854.55 -1.68 -27.86 16 3 C 0.26 13.98 5.21 85.63 0.45 14.42 16 4 C -0.54 -30.57 8.82 25.60 0.23 -30.35 16 5 H 0.08 4.20 5.18 -2.91 -0.02 4.19 16 6 C 0.01 0.50 5.46 84.65 0.46 0.97 16 7 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 8 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 9 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 12 C 0.55 24.29 3.84 86.79 0.33 24.62 16 13 O -0.58 -30.60 13.34 -3.87 -0.05 -30.65 16 14 C -0.13 -4.45 3.68 -20.09 -0.07 -4.52 16 15 C -0.10 -2.67 9.24 22.52 0.21 -2.47 16 16 C -0.12 -2.25 10.03 22.23 0.22 -2.03 16 17 C -0.10 -1.66 10.04 22.33 0.22 -1.44 16 18 C -0.12 -2.63 9.00 22.23 0.20 -2.43 16 19 C -0.05 -1.40 4.77 -19.61 -0.09 -1.50 16 20 C -0.03 -1.02 0.75 -52.93 -0.04 -1.06 16 21 C -0.13 -3.10 7.16 71.98 0.52 -2.59 16 22 C -0.17 -6.50 7.08 71.98 0.51 -5.99 16 23 C -0.17 -6.41 8.32 71.98 0.60 -5.81 16 24 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 2.31 8.11 -2.39 -0.02 2.29 16 26 H 0.08 2.33 6.50 -2.39 -0.02 2.32 16 27 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 28 H 0.00 -0.02 7.37 -2.39 -0.02 -0.04 16 29 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 30 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.15 2.46 5.91 -2.91 -0.02 2.44 16 34 H 0.07 1.43 7.84 -2.39 -0.02 1.41 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.43 7.19 -2.39 -0.02 1.42 16 37 H 0.08 3.65 1.73 -2.39 0.00 3.64 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 3.48 3.85 -11.86 -0.05 3.43 16 Total: -1.00 -72.28 326.01 6.58 -65.70 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.97 Total: 18.08 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 5.03 Total: -16.16 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.39 Total: -84.09 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.28 6.58 -65.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167007142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.966 kcal (2) G-P(sol) polarization free energy of solvation -72.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds