Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46844 * 2 1 4 4 C 1.53009 * 109.47408 * 305.00887 * 3 2 1 5 5 C 1.52999 * 109.46729 * 294.38857 * 4 3 2 6 6 C 1.52998 * 109.47442 * 65.00860 * 3 2 1 7 7 C 1.50706 * 109.46910 * 65.00080 * 6 3 2 8 8 O 1.21277 * 119.99803 * 356.84291 * 7 6 3 9 9 N 1.34771 * 119.99881 * 176.84205 * 7 6 3 10 10 C 1.37145 * 120.00365 * 4.32289 * 9 7 6 11 11 H 1.07998 * 119.99746 * 57.40464 * 10 9 7 12 12 C 1.38892 * 119.99637 * 237.41286 * 10 9 7 13 13 N 1.31420 * 120.00286 * 6.11811 * 12 10 9 14 14 Si 1.86797 * 119.99652 * 186.12319 * 12 10 9 15 15 H 1.48497 * 109.47253 * 89.99462 * 14 12 10 16 16 H 1.48501 * 109.47051 * 209.99678 * 14 12 10 17 17 H 1.48498 * 109.47178 * 329.99605 * 14 12 10 18 18 C 1.39794 * 119.99917 * 184.31608 * 9 7 6 19 19 C 1.38956 * 120.07578 * 174.00480 * 18 9 7 20 20 C 1.38088 * 119.91998 * 179.97438 * 19 18 9 21 21 C 1.38307 * 120.07458 * 0.02562 * 20 19 18 22 22 C 1.38304 * 120.16150 * 359.97438 * 21 20 19 23 23 C 1.38092 * 120.07630 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47179 * 185.08675 * 1 2 3 25 25 H 1.09006 * 109.47092 * 305.08313 * 1 2 3 26 26 H 1.09004 * 109.47567 * 65.08578 * 1 2 3 27 27 H 1.08999 * 109.47011 * 240.00213 * 2 1 3 28 28 H 1.08993 * 109.46963 * 119.99787 * 2 1 3 29 29 H 1.08998 * 109.47147 * 185.01271 * 3 2 1 30 30 H 1.08999 * 109.46647 * 54.38686 * 4 3 2 31 31 H 1.08995 * 109.46999 * 174.38806 * 4 3 2 32 32 H 1.09002 * 109.47123 * 65.22747 * 5 4 3 33 33 H 1.09007 * 109.46597 * 185.21813 * 5 4 3 34 34 H 1.08993 * 109.47443 * 305.22101 * 5 4 3 35 35 H 1.08993 * 109.47190 * 305.00197 * 6 3 2 36 36 H 1.09005 * 109.47225 * 184.99840 * 6 3 2 37 37 H 0.96998 * 119.99768 * 185.00086 * 13 12 10 38 38 H 1.08001 * 120.04366 * 359.70818 * 19 18 9 39 39 H 1.07998 * 119.96137 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.92058 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.96613 * 180.02562 * 22 21 20 42 42 H 1.07996 * 120.04002 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4297 2.1993 -1.1815 5 6 1.9463 1.6013 -2.4917 6 6 1.6354 2.1265 1.3074 7 6 2.3346 1.4565 2.4621 8 8 3.0377 0.4881 2.2658 9 7 2.1785 1.9336 3.7129 10 6 1.3147 2.9726 3.9477 11 1 0.2742 2.8823 3.6731 12 6 1.7783 4.1409 4.5386 13 7 3.0636 4.2988 4.7628 14 14 0.5748 5.4878 5.0149 15 1 0.1066 5.2640 6.4062 16 1 1.2488 6.8081 4.9258 17 1 -0.5877 5.4621 4.0913 18 6 2.8970 1.3692 4.7709 19 6 2.8333 1.9374 6.0374 20 6 3.5439 1.3770 7.0803 21 6 4.3187 0.2517 6.8654 22 6 4.3844 -0.3166 5.6062 23 6 3.6764 0.2386 4.5586 24 1 -0.3633 -1.0236 0.0911 25 1 -0.3633 0.5907 0.8410 26 1 -0.3634 0.4329 -0.9320 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.1262 1.4439 -0.0898 30 1 0.3436 2.1132 -1.1461 31 1 1.7129 3.2502 -1.1252 32 1 1.5847 0.5779 -2.5915 33 1 1.5857 2.1973 -3.3301 34 1 3.0362 1.6028 -2.4869 35 1 0.5565 2.0469 1.4403 36 1 1.9204 3.1780 1.2707 37 1 3.3800 5.0815 5.2404 38 1 2.2322 2.8189 6.2049 39 1 3.4952 1.8184 8.0648 40 1 4.8738 -0.1844 7.6828 41 1 4.9901 -1.1955 5.4420 42 1 3.7285 -0.2054 3.5755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177358584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = -11.461361 kcal Electronic energy + Delta-G solvation = -22098.604856 eV Core-core repulsion = 19043.634086 eV Total energy + Delta-G solvation = -3054.970770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.81956 -37.79074 -36.31708 -34.94274 -31.94189 -30.93733 -29.98685 -29.55311 -28.19922 -25.25824 -24.48781 -23.16849 -21.64800 -21.06488 -19.42504 -18.60445 -17.48178 -16.15062 -15.69251 -15.34412 -15.14302 -14.74893 -14.39697 -13.83107 -13.54661 -13.26387 -12.94573 -12.85796 -12.58860 -12.31360 -12.13927 -11.94009 -11.71108 -11.54670 -11.27422 -11.23620 -11.08705 -11.04055 -10.82114 -10.69045 -10.48246 -10.06389 -9.96392 -9.93416 -9.90992 -9.13258 -8.73209 -8.01480 -7.75306 -6.85188 -6.27357 -4.54959 2.46590 2.60355 3.03385 3.11613 3.13569 3.79653 3.97709 4.53176 4.76411 5.15602 5.21327 5.26026 5.30647 5.55749 5.63553 5.72369 5.81657 5.90077 6.00006 6.01155 6.07610 6.13863 6.20711 6.23653 6.25464 6.30846 6.35072 6.47337 6.59920 6.71349 6.75771 6.78583 6.84776 6.97339 7.03457 7.20888 7.26083 7.55298 7.66237 7.74551 7.83918 8.09487 8.47568 8.86643 9.30191 9.68036 10.49044 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.007141 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.434365 B = 3920.123211 C = 5347.765740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.072 4.072 4 C -0.123 4.123 5 C -0.149 4.149 6 C -0.114 4.114 7 C 0.497 3.503 8 O -0.564 6.564 9 N -0.387 5.387 10 C -0.365 4.365 11 H 0.092 0.908 12 C 0.055 3.945 13 N -0.843 5.843 14 Si 0.914 3.086 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.183 3.817 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.175 4.175 22 C -0.122 4.122 23 C -0.193 4.193 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.274 0.726 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -2.587 -5.541 7.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.207 4.207 6 C -0.154 4.154 7 C 0.290 3.710 8 O -0.449 6.449 9 N -0.094 5.094 10 C -0.493 4.493 11 H 0.109 0.891 12 C -0.155 4.155 13 N -0.475 5.475 14 Si 0.739 3.261 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.189 1.189 18 C 0.086 3.914 19 C -0.126 4.126 20 C -0.144 4.144 21 C -0.194 4.194 22 C -0.141 4.141 23 C -0.213 4.213 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.150 0.850 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.990 -2.819 -5.697 7.025 hybrid contribution -0.401 1.064 0.627 1.299 sum -3.392 -1.755 -5.070 6.347 Atomic orbital electron populations 1.21901 0.97030 1.00825 1.01390 1.21675 0.94925 0.96736 1.02882 1.20963 1.00431 0.94786 0.92901 1.21648 1.00694 0.99378 0.94327 1.21775 1.01082 1.00755 0.97053 1.21460 1.01167 1.00838 0.91924 1.20972 0.81479 0.84120 0.84425 1.90125 1.41779 1.28862 1.84143 1.41041 1.36091 1.29004 1.03291 1.19297 0.91499 0.91740 1.46717 0.89082 1.25645 0.95864 0.97815 0.96133 1.70026 1.12759 1.28939 1.35805 0.86128 0.80376 0.80085 0.79499 1.19822 1.20571 1.18904 1.18343 0.93242 0.91347 0.88425 1.21053 1.00803 0.99470 0.91225 1.20770 0.98933 0.96742 0.97997 1.20772 1.03042 0.98764 0.96834 1.20862 1.00233 0.99754 0.93232 1.22801 0.98834 0.97121 1.02538 0.93631 0.92534 0.93114 0.93004 0.89548 0.91039 0.91734 0.92276 0.92743 0.93434 0.92917 0.89619 0.89179 0.91563 0.85038 0.87902 0.88308 0.87851 0.80842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.13 37.16 0.34 -1.79 16 2 C -0.12 -1.95 5.14 -26.73 -0.14 -2.08 16 3 C -0.07 -1.16 1.81 -90.62 -0.16 -1.32 16 4 C -0.12 -1.63 5.09 -26.73 -0.14 -1.77 16 5 C -0.15 -1.74 9.55 37.16 0.35 -1.38 16 6 C -0.11 -2.15 3.86 -27.88 -0.11 -2.26 16 7 C 0.50 11.42 7.31 -10.98 -0.08 11.34 16 8 O -0.56 -13.37 10.27 5.56 0.06 -13.31 16 9 N -0.39 -9.62 2.61 -58.98 -0.15 -9.78 16 10 C -0.36 -8.87 7.59 -14.93 -0.11 -8.98 16 11 H 0.09 2.11 7.84 -52.49 -0.41 1.70 16 12 C 0.05 1.32 3.64 -17.49 -0.06 1.26 16 13 N -0.84 -21.80 11.26 55.49 0.62 -21.18 16 14 Si 0.91 18.51 29.56 -169.99 -5.02 13.48 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 18 C 0.18 4.64 6.06 -83.69 -0.51 4.13 16 19 C -0.10 -2.55 7.87 -39.37 -0.31 -2.86 16 20 C -0.13 -2.70 10.04 -39.61 -0.40 -3.09 16 21 C -0.17 -3.55 10.04 -39.53 -0.40 -3.94 16 22 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 23 C -0.19 -4.63 9.05 -39.37 -0.36 -4.98 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.83 6.25 -51.93 -0.32 0.50 16 26 H 0.05 0.62 6.53 -51.93 -0.34 0.28 16 27 H 0.05 0.74 6.95 -51.93 -0.36 0.37 16 28 H 0.09 1.60 5.76 -51.93 -0.30 1.30 16 29 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 30 H 0.06 0.81 6.14 -51.93 -0.32 0.49 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.61 6.96 -51.93 -0.36 0.25 16 33 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.52 6.22 -51.93 -0.32 1.20 16 36 H 0.09 1.76 8.08 -51.93 -0.42 1.34 16 37 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 38 H 0.13 3.31 5.14 -52.49 -0.27 3.04 16 39 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 42 H 0.18 4.26 4.52 -56.30 -0.25 4.00 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -26.86 324.68 -8.27 -35.13 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.19 Total: 11.48 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.47 Total: -20.71 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.47 Total: -30.96 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.06 Total: -13.31 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.86 -8.27 -35.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177358584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.668 kcal (2) G-P(sol) polarization free energy of solvation -26.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds