Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46844 * 2 1 4 4 C 1.53009 * 109.47408 * 305.00887 * 3 2 1 5 5 C 1.52999 * 109.46729 * 294.38857 * 4 3 2 6 6 C 1.52998 * 109.47442 * 65.00860 * 3 2 1 7 7 C 1.50706 * 109.46910 * 65.00080 * 6 3 2 8 8 O 1.21277 * 119.99803 * 356.84291 * 7 6 3 9 9 N 1.34771 * 119.99881 * 176.84205 * 7 6 3 10 10 C 1.37145 * 120.00365 * 4.32289 * 9 7 6 11 11 H 1.07998 * 119.99746 * 57.40464 * 10 9 7 12 12 C 1.38892 * 119.99637 * 237.41286 * 10 9 7 13 13 N 1.31420 * 120.00286 * 6.11811 * 12 10 9 14 14 Si 1.86797 * 119.99652 * 186.12319 * 12 10 9 15 15 H 1.48497 * 109.47253 * 89.99462 * 14 12 10 16 16 H 1.48501 * 109.47051 * 209.99678 * 14 12 10 17 17 H 1.48498 * 109.47178 * 329.99605 * 14 12 10 18 18 C 1.39794 * 119.99917 * 184.31608 * 9 7 6 19 19 C 1.38956 * 120.07578 * 174.00480 * 18 9 7 20 20 C 1.38088 * 119.91998 * 179.97438 * 19 18 9 21 21 C 1.38307 * 120.07458 * 0.02562 * 20 19 18 22 22 C 1.38304 * 120.16150 * 359.97438 * 21 20 19 23 23 C 1.38092 * 120.07630 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47179 * 185.08675 * 1 2 3 25 25 H 1.09006 * 109.47092 * 305.08313 * 1 2 3 26 26 H 1.09004 * 109.47567 * 65.08578 * 1 2 3 27 27 H 1.08999 * 109.47011 * 240.00213 * 2 1 3 28 28 H 1.08993 * 109.46963 * 119.99787 * 2 1 3 29 29 H 1.08998 * 109.47147 * 185.01271 * 3 2 1 30 30 H 1.08999 * 109.46647 * 54.38686 * 4 3 2 31 31 H 1.08995 * 109.46999 * 174.38806 * 4 3 2 32 32 H 1.09002 * 109.47123 * 65.22747 * 5 4 3 33 33 H 1.09007 * 109.46597 * 185.21813 * 5 4 3 34 34 H 1.08993 * 109.47443 * 305.22101 * 5 4 3 35 35 H 1.08993 * 109.47190 * 305.00197 * 6 3 2 36 36 H 1.09005 * 109.47225 * 184.99840 * 6 3 2 37 37 H 0.96998 * 119.99768 * 185.00086 * 13 12 10 38 38 H 1.08001 * 120.04366 * 359.70818 * 19 18 9 39 39 H 1.07998 * 119.96137 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.92058 * 179.97438 * 21 20 19 41 41 H 1.07995 * 119.96613 * 180.02562 * 22 21 20 42 42 H 1.07996 * 120.04002 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4297 2.1993 -1.1815 5 6 1.9463 1.6013 -2.4917 6 6 1.6354 2.1265 1.3074 7 6 2.3346 1.4565 2.4621 8 8 3.0377 0.4881 2.2658 9 7 2.1785 1.9336 3.7129 10 6 1.3147 2.9726 3.9477 11 1 0.2742 2.8823 3.6731 12 6 1.7783 4.1409 4.5386 13 7 3.0636 4.2988 4.7628 14 14 0.5748 5.4878 5.0149 15 1 0.1066 5.2640 6.4062 16 1 1.2488 6.8081 4.9258 17 1 -0.5877 5.4621 4.0913 18 6 2.8970 1.3692 4.7709 19 6 2.8333 1.9374 6.0374 20 6 3.5439 1.3770 7.0803 21 6 4.3187 0.2517 6.8654 22 6 4.3844 -0.3166 5.6062 23 6 3.6764 0.2386 4.5586 24 1 -0.3633 -1.0236 0.0911 25 1 -0.3633 0.5907 0.8410 26 1 -0.3634 0.4329 -0.9320 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.1262 1.4439 -0.0898 30 1 0.3436 2.1132 -1.1461 31 1 1.7129 3.2502 -1.1252 32 1 1.5847 0.5779 -2.5915 33 1 1.5857 2.1973 -3.3301 34 1 3.0362 1.6028 -2.4869 35 1 0.5565 2.0469 1.4403 36 1 1.9204 3.1780 1.2707 37 1 3.3800 5.0815 5.2404 38 1 2.2322 2.8189 6.2049 39 1 3.4952 1.8184 8.0648 40 1 4.8738 -0.1844 7.6828 41 1 4.9901 -1.1955 5.4420 42 1 3.7285 -0.2054 3.5755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177358584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = -23.187081 kcal Electronic energy + Delta-G solvation = -22099.113321 eV Core-core repulsion = 19043.634086 eV Total energy + Delta-G solvation = -3055.479236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56481 -39.37232 -37.77925 -36.73441 -33.79458 -32.06771 -31.51309 -31.28037 -29.77240 -27.07241 -25.88260 -24.30530 -23.36210 -22.76280 -21.15620 -20.01541 -19.17340 -17.87470 -17.42692 -16.91941 -16.65105 -16.25361 -15.96589 -15.30893 -15.19399 -14.77899 -14.57595 -14.31461 -13.99767 -13.74793 -13.58853 -13.49036 -13.22381 -13.01436 -12.80063 -12.75906 -12.67617 -12.44852 -12.18541 -12.09776 -11.87658 -11.71164 -11.29469 -11.23378 -11.17747 -10.87831 -10.54098 -9.78196 -9.51477 -8.68597 -8.09611 -6.44829 0.72079 0.82885 1.42454 1.44785 1.55668 2.04812 2.26673 2.85420 2.94871 3.37718 3.97443 3.98445 4.04258 4.29462 4.32564 4.43565 4.48851 4.49902 4.59731 4.64626 4.73289 4.85445 4.88633 4.97694 4.99798 5.04384 5.09152 5.12759 5.20116 5.21155 5.36777 5.37708 5.40759 5.43255 5.48349 5.61225 5.75812 5.82040 5.91792 5.93811 6.10575 6.25519 6.65872 7.01812 7.48964 7.86447 8.66435 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.007141 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.434365 B = 3920.123211 C = 5347.765740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.117 4.117 5 C -0.147 4.147 6 C -0.104 4.104 7 C 0.482 3.518 8 O -0.578 6.578 9 N -0.403 5.403 10 C -0.376 4.376 11 H 0.097 0.903 12 C 0.019 3.981 13 N -0.880 5.880 14 Si 0.979 3.021 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.251 1.251 18 C 0.151 3.849 19 C -0.127 4.127 20 C -0.127 4.127 21 C -0.167 4.167 22 C -0.121 4.121 23 C -0.218 4.218 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.273 0.727 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 -2.657 -5.695 7.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.155 4.155 5 C -0.204 4.204 6 C -0.144 4.144 7 C 0.276 3.724 8 O -0.464 6.464 9 N -0.111 5.111 10 C -0.503 4.503 11 H 0.115 0.885 12 C -0.186 4.186 13 N -0.513 5.513 14 Si 0.801 3.199 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.175 1.175 18 C 0.055 3.945 19 C -0.148 4.148 20 C -0.146 4.146 21 C -0.186 4.186 22 C -0.140 4.140 23 C -0.238 4.238 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.827 -2.904 -5.861 7.579 hybrid contribution -0.072 0.992 0.722 1.229 sum -3.899 -1.912 -5.140 6.729 Atomic orbital electron populations 1.21859 0.95304 1.01446 1.02022 1.21587 0.96397 0.95937 1.01912 1.20926 0.99282 0.95542 0.92773 1.21609 1.01253 0.98925 0.93691 1.21754 1.00731 1.01347 0.96545 1.21462 1.01298 0.99931 0.91676 1.21716 0.81620 0.84133 0.84980 1.90111 1.42408 1.29453 1.84449 1.41329 1.36433 1.29404 1.03918 1.19582 0.91796 0.91982 1.46906 0.88517 1.26392 0.97168 0.99521 0.95563 1.70149 1.14715 1.29581 1.36843 0.85137 0.78530 0.76860 0.79326 1.19558 1.20822 1.17479 1.18728 0.94328 0.92314 0.89177 1.21077 1.02105 0.99671 0.91923 1.21150 0.97990 0.96945 0.98476 1.21194 1.02072 0.97777 0.97533 1.21238 0.99442 1.00344 0.92934 1.22848 1.00197 0.97564 1.03192 0.92750 0.93795 0.90805 0.91416 0.93016 0.93316 0.90420 0.92350 0.92119 0.91501 0.93543 0.88491 0.90206 0.91730 0.86582 0.85125 0.84160 0.84799 0.82072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.13 71.98 0.66 -3.24 16 2 C -0.12 -3.74 5.14 30.59 0.16 -3.59 16 3 C -0.07 -2.15 1.81 -10.79 -0.02 -2.17 16 4 C -0.12 -2.93 5.09 30.60 0.16 -2.78 16 5 C -0.15 -3.08 9.55 71.98 0.69 -2.40 16 6 C -0.10 -4.02 3.86 29.85 0.12 -3.91 16 7 C 0.48 23.11 7.31 87.66 0.64 23.75 16 8 O -0.58 -28.84 10.27 -3.02 -0.03 -28.87 16 9 N -0.40 -20.82 2.61 -458.90 -1.20 -22.02 16 10 C -0.38 -18.70 7.59 84.02 0.64 -18.06 16 11 H 0.10 4.54 7.84 -2.91 -0.02 4.52 16 12 C 0.02 0.95 3.64 84.91 0.31 1.26 16 13 N -0.88 -46.68 11.26 21.65 0.24 -46.44 16 14 Si 0.98 38.04 29.56 68.60 2.03 40.06 16 15 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 16 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 17 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 18 C 0.15 7.90 6.06 38.22 0.23 8.13 16 19 C -0.13 -6.27 7.87 22.41 0.18 -6.10 16 20 C -0.13 -5.31 10.04 22.25 0.22 -5.08 16 21 C -0.17 -6.37 10.04 22.30 0.22 -6.14 16 22 C -0.12 -4.98 10.04 22.25 0.22 -4.76 16 23 C -0.22 -10.70 9.05 22.41 0.20 -10.49 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.25 6.25 -2.38 -0.01 1.23 16 26 H 0.07 1.59 6.53 -2.39 -0.02 1.57 16 27 H 0.07 1.86 6.95 -2.39 -0.02 1.84 16 28 H 0.05 1.97 5.76 -2.39 -0.01 1.96 16 29 H 0.05 1.78 8.00 -2.39 -0.02 1.76 16 30 H 0.08 1.75 6.14 -2.39 -0.01 1.74 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.20 6.96 -2.39 -0.02 1.19 16 33 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 3.48 6.22 -2.39 -0.01 3.46 16 36 H 0.08 3.21 8.08 -2.38 -0.02 3.19 16 37 H 0.27 13.73 8.32 -92.71 -0.77 12.96 16 38 H 0.12 6.00 5.14 -2.91 -0.01 5.99 16 39 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 40 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 42 H 0.16 8.27 4.52 -63.29 -0.29 7.98 16 Total: -1.00 -59.97 324.68 6.40 -53.57 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 0.73 Total: 39.28 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 4.62 Total: -35.59 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -0.96 Total: -68.45 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.03 Total: -28.87 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.06 kcal Total: -59.97 6.40 -53.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177358584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.387 kcal (2) G-P(sol) polarization free energy of solvation -59.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds