Wall clock time and date at job start Mon Mar 30 2020 01:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38170 * 120.02476 * 2 1 4 4 C 1.38242 * 120.05221 * 179.97438 * 3 2 1 5 5 C 1.38288 * 120.11412 * 0.27609 * 4 3 2 6 6 C 1.38119 * 120.05447 * 359.44600 * 5 4 3 7 7 C 1.50697 * 120.02805 * 180.27994 * 6 5 4 8 8 N 1.46910 * 109.47165 * 260.27457 * 7 6 5 9 9 C 1.46890 * 110.99904 * 190.00103 * 8 7 6 10 10 C 1.50699 * 109.47375 * 75.54066 * 9 8 7 11 11 H 1.07998 * 119.99940 * 356.73668 * 10 9 8 12 12 C 1.37878 * 120.00196 * 176.73841 * 10 9 8 13 13 N 1.31516 * 120.00221 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99966 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47574 * 90.00027 * 14 12 10 16 16 H 1.48508 * 109.47022 * 210.00043 * 14 12 10 17 17 H 1.48504 * 109.47168 * 329.99668 * 14 12 10 18 18 C 1.46898 * 110.99845 * 66.04403 * 8 7 6 19 19 C 1.53000 * 109.47178 * 195.60721 * 18 8 7 20 20 C 1.52994 * 117.50180 * 244.15227 * 19 18 8 21 21 C 1.52993 * 117.50159 * 175.48818 * 19 18 8 22 22 C 1.38708 * 120.03090 * 179.97438 * 2 1 3 23 23 O 1.35901 * 120.05318 * 359.97438 * 22 2 1 24 24 H 1.09006 * 109.47614 * 90.00319 * 1 2 3 25 25 H 1.09006 * 109.47212 * 209.99682 * 1 2 3 26 26 H 1.09004 * 109.47288 * 329.99744 * 1 2 3 27 27 H 1.07995 * 119.97508 * 359.95561 * 3 2 1 28 28 H 1.08007 * 119.93942 * 179.97438 * 4 3 2 29 29 H 1.08006 * 119.96871 * 179.72728 * 5 4 3 30 30 H 1.09002 * 109.47377 * 20.26980 * 7 6 5 31 31 H 1.08997 * 109.47516 * 140.27752 * 7 6 5 32 32 H 1.09001 * 109.46873 * 195.53949 * 9 8 7 33 33 H 1.09006 * 109.47534 * 315.53805 * 9 8 7 34 34 H 0.97001 * 120.00577 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.47073 * 315.61057 * 18 8 7 36 36 H 1.08997 * 109.46663 * 75.60974 * 18 8 7 37 37 H 1.09003 * 115.54775 * 29.82303 * 19 18 8 38 38 H 1.08999 * 117.49511 * 359.97438 * 20 19 18 39 39 H 1.09001 * 117.50178 * 145.01675 * 20 19 18 40 40 H 1.09003 * 117.50444 * 214.98217 * 21 19 18 41 41 H 1.09005 * 117.50017 * 0.02562 * 21 19 18 42 42 H 0.96701 * 113.99789 * 90.00342 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1970 0.0005 5 6 4.2751 0.0011 -0.0047 6 6 3.5887 -1.1974 0.0011 7 6 4.3460 -2.5003 0.0018 8 7 4.3848 -3.0449 -1.3621 9 6 4.9032 -4.4193 -1.3656 10 6 3.8397 -5.3586 -0.8578 11 1 2.8940 -4.9677 -0.5126 12 6 4.0741 -6.7171 -0.8340 13 7 3.1462 -7.5369 -0.3904 14 14 5.7101 -7.3933 -1.4303 15 1 6.6624 -7.4603 -0.2928 16 1 5.5091 -8.7547 -1.9885 17 1 6.2594 -6.5025 -2.4840 18 6 5.1741 -2.1822 -2.2512 19 6 4.8810 -2.5468 -3.7079 20 6 6.0340 -3.1097 -4.5411 21 6 5.5287 -1.6874 -4.7954 22 6 2.2011 -1.2009 0.0005 23 8 1.5234 -2.3788 0.0016 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6583 2.1316 -0.0007 28 1 4.1193 2.1331 0.0001 29 1 5.3552 0.0043 -0.0087 30 1 5.3634 -2.3290 0.3535 31 1 3.8478 -3.2099 0.6623 32 1 5.1811 -4.7002 -2.3814 33 1 5.7791 -4.4789 -0.7195 34 1 3.3112 -8.4926 -0.3732 35 1 4.9075 -1.1398 -2.0768 36 1 6.2354 -2.3248 -2.0475 37 1 3.8819 -2.9366 -3.9030 38 1 7.0016 -3.2200 -4.0516 39 1 5.7936 -3.8697 -5.2846 40 1 4.9560 -1.5121 -5.7062 41 1 6.1641 -0.8624 -4.4731 42 1 1.3269 -2.7203 -0.8815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180057365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:51 Heat of formation + Delta-G solvation = 7.033024 kcal Electronic energy + Delta-G solvation = -21725.720475 eV Core-core repulsion = 18671.551681 eV Total energy + Delta-G solvation = -3054.168794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82021 -37.80423 -36.13388 -35.61058 -32.87645 -32.12765 -30.19005 -28.13718 -26.65251 -26.54309 -23.80206 -22.13802 -21.61267 -21.13889 -20.25040 -19.60649 -17.75915 -16.79535 -15.85695 -15.68350 -15.25997 -14.99361 -14.58659 -14.21704 -13.89870 -13.55674 -13.35903 -13.03353 -12.92850 -12.48164 -12.28194 -12.21473 -11.91313 -11.64576 -11.49787 -11.38498 -11.29199 -10.97444 -10.73953 -10.66074 -10.45043 -10.02630 -9.87491 -9.77657 -9.45985 -9.26744 -8.53522 -8.40991 -8.19546 -7.41619 -6.00296 -3.96548 1.51337 1.54526 3.29824 3.37744 3.39657 3.81648 4.10038 4.45441 4.69164 4.75352 5.00059 5.01416 5.10041 5.19897 5.22510 5.31548 5.39467 5.49447 5.63365 5.73048 5.75459 5.80532 5.82364 5.84379 5.95696 6.07359 6.09980 6.15638 6.21621 6.31944 6.34029 6.55798 6.60885 6.64081 6.69291 6.83965 6.90610 7.01007 7.11107 7.67124 7.91655 8.03784 8.23092 8.70347 9.12137 9.62000 11.12768 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.006326 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.535961 B = 4424.904753 C = 5573.902792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.115 4.115 4 C -0.134 4.134 5 C -0.112 4.112 6 C -0.089 4.089 7 C 0.101 3.899 8 N -0.516 5.516 9 C 0.161 3.839 10 C -0.503 4.503 11 H 0.085 0.915 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.869 3.131 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.266 1.266 18 C 0.079 3.921 19 C -0.129 4.129 20 C -0.184 4.184 21 C -0.186 4.186 22 C 0.136 3.864 23 O -0.485 6.485 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.027 0.973 31 H 0.102 0.898 32 H 0.035 0.965 33 H -0.019 1.019 34 H 0.262 0.738 35 H 0.070 0.930 36 H 0.022 0.978 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 16.559 -3.386 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.133 4.133 4 C -0.152 4.152 5 C -0.130 4.130 6 C -0.090 4.090 7 C -0.027 4.027 8 N -0.240 5.240 9 C 0.035 3.965 10 C -0.541 4.541 11 H 0.103 0.897 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.696 3.304 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.049 4.049 19 C -0.147 4.147 20 C -0.221 4.221 21 C -0.224 4.224 22 C 0.091 3.909 23 O -0.297 6.297 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.045 0.955 31 H 0.120 0.880 32 H 0.053 0.947 33 H -0.001 1.001 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.456 16.366 -2.924 16.632 hybrid contribution 1.826 -0.579 -0.550 1.993 sum 2.282 15.787 -3.474 16.325 Atomic orbital electron populations 1.20649 0.91069 1.02839 1.02038 1.20231 0.96516 0.92733 1.02640 1.20805 0.94094 0.96820 1.01614 1.20981 0.94198 0.97639 1.02370 1.20942 0.99476 0.91757 1.00851 1.20365 0.93553 0.95579 0.99519 1.20918 0.96725 0.92729 0.92296 1.61934 1.52486 1.02933 1.06618 1.20250 0.94638 0.84933 0.96682 1.21075 1.01899 0.89939 1.41209 0.89663 1.24875 0.96200 0.97008 0.95193 1.69894 1.33454 1.03226 1.47402 0.86963 0.85158 0.78620 0.79611 1.20518 1.21290 1.19099 1.21707 0.94764 0.97376 0.91088 1.22272 0.98217 1.02555 0.91702 1.23001 0.98999 0.96198 1.03928 1.22931 1.04570 0.94212 1.00663 1.18118 0.89221 0.85205 0.98383 1.84713 1.75666 1.35245 1.34030 0.91605 0.90768 0.92055 0.86403 0.86484 0.86466 0.95491 0.87980 0.94685 1.00090 0.92816 0.91138 0.95943 0.86911 0.89401 0.89140 0.89225 0.89436 0.74485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.79 36.00 0.35 -0.92 16 2 C -0.12 -1.70 5.89 -104.48 -0.62 -2.31 16 3 C -0.11 -1.43 9.70 -39.60 -0.38 -1.82 16 4 C -0.13 -1.66 10.04 -39.56 -0.40 -2.05 16 5 C -0.11 -1.57 8.30 -39.61 -0.33 -1.90 16 6 C -0.09 -1.47 4.65 -104.48 -0.49 -1.96 16 7 C 0.10 1.91 4.58 -4.97 -0.02 1.89 16 8 N -0.52 -10.26 4.38 -237.52 -1.04 -11.30 16 9 C 0.16 3.79 3.67 -4.98 -0.02 3.78 16 10 C -0.50 -13.89 9.14 -34.44 -0.31 -14.21 16 11 H 0.09 2.55 7.93 -52.49 -0.42 2.14 16 12 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 13 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 14 Si 0.87 21.44 27.53 -169.99 -4.68 16.76 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.31 6.45 56.52 0.36 -5.95 16 18 C 0.08 1.34 5.10 -3.83 -0.02 1.32 16 19 C -0.13 -2.07 4.96 -90.63 -0.45 -2.52 16 20 C -0.18 -2.75 9.97 -26.70 -0.27 -3.01 16 21 C -0.19 -2.44 10.25 -26.70 -0.27 -2.71 16 22 C 0.14 2.25 6.65 -39.22 -0.26 1.99 16 23 O -0.49 -8.62 11.78 -19.43 -0.23 -8.84 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 26 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.12 1.48 8.04 -52.48 -0.42 1.06 16 30 H 0.03 0.49 7.99 -51.93 -0.41 0.07 16 31 H 0.10 2.25 7.05 -51.93 -0.37 1.88 16 32 H 0.04 0.84 5.76 -51.93 -0.30 0.54 16 33 H -0.02 -0.45 7.60 -51.93 -0.39 -0.84 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 35 H 0.07 1.11 5.86 -51.93 -0.30 0.81 16 36 H 0.02 0.38 7.79 -51.93 -0.40 -0.02 16 37 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 38 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.40 6.34 9.06 45.56 0.41 6.75 16 LS Contribution 342.37 15.07 5.16 5.16 Total: -1.00 -30.30 342.37 -9.57 -39.87 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.97 Total: 7.59 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -3.58 Total: -22.58 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.27 Total: -37.95 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.23 Total: -8.84 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.68 Total: 16.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.30 -9.57 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180057365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.901 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds