Wall clock time and date at job start Mon Mar 30 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38170 * 120.02476 * 2 1 4 4 C 1.38242 * 120.05221 * 179.97438 * 3 2 1 5 5 C 1.38288 * 120.11412 * 0.27609 * 4 3 2 6 6 C 1.38119 * 120.05447 * 359.44600 * 5 4 3 7 7 C 1.50697 * 120.02805 * 180.27994 * 6 5 4 8 8 N 1.46910 * 109.47165 * 260.27457 * 7 6 5 9 9 C 1.46890 * 110.99904 * 190.00103 * 8 7 6 10 10 C 1.50699 * 109.47375 * 75.54066 * 9 8 7 11 11 H 1.07998 * 119.99940 * 356.73668 * 10 9 8 12 12 C 1.37878 * 120.00196 * 176.73841 * 10 9 8 13 13 N 1.31516 * 120.00221 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99966 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47574 * 90.00027 * 14 12 10 16 16 H 1.48508 * 109.47022 * 210.00043 * 14 12 10 17 17 H 1.48504 * 109.47168 * 329.99668 * 14 12 10 18 18 C 1.46898 * 110.99845 * 66.04403 * 8 7 6 19 19 C 1.53000 * 109.47178 * 195.60721 * 18 8 7 20 20 C 1.52994 * 117.50180 * 244.15227 * 19 18 8 21 21 C 1.52993 * 117.50159 * 175.48818 * 19 18 8 22 22 C 1.38708 * 120.03090 * 179.97438 * 2 1 3 23 23 O 1.35901 * 120.05318 * 359.97438 * 22 2 1 24 24 H 1.09006 * 109.47614 * 90.00319 * 1 2 3 25 25 H 1.09006 * 109.47212 * 209.99682 * 1 2 3 26 26 H 1.09004 * 109.47288 * 329.99744 * 1 2 3 27 27 H 1.07995 * 119.97508 * 359.95561 * 3 2 1 28 28 H 1.08007 * 119.93942 * 179.97438 * 4 3 2 29 29 H 1.08006 * 119.96871 * 179.72728 * 5 4 3 30 30 H 1.09002 * 109.47377 * 20.26980 * 7 6 5 31 31 H 1.08997 * 109.47516 * 140.27752 * 7 6 5 32 32 H 1.09001 * 109.46873 * 195.53949 * 9 8 7 33 33 H 1.09006 * 109.47534 * 315.53805 * 9 8 7 34 34 H 0.97001 * 120.00577 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.47073 * 315.61057 * 18 8 7 36 36 H 1.08997 * 109.46663 * 75.60974 * 18 8 7 37 37 H 1.09003 * 115.54775 * 29.82303 * 19 18 8 38 38 H 1.08999 * 117.49511 * 359.97438 * 20 19 18 39 39 H 1.09001 * 117.50178 * 145.01675 * 20 19 18 40 40 H 1.09003 * 117.50444 * 214.98217 * 21 19 18 41 41 H 1.09005 * 117.50017 * 0.02562 * 21 19 18 42 42 H 0.96701 * 113.99789 * 90.00342 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1970 0.0005 5 6 4.2751 0.0011 -0.0047 6 6 3.5887 -1.1974 0.0011 7 6 4.3460 -2.5003 0.0018 8 7 4.3848 -3.0449 -1.3621 9 6 4.9032 -4.4193 -1.3656 10 6 3.8397 -5.3586 -0.8578 11 1 2.8940 -4.9677 -0.5126 12 6 4.0741 -6.7171 -0.8340 13 7 3.1462 -7.5369 -0.3904 14 14 5.7101 -7.3933 -1.4303 15 1 6.6624 -7.4603 -0.2928 16 1 5.5091 -8.7547 -1.9885 17 1 6.2594 -6.5025 -2.4840 18 6 5.1741 -2.1822 -2.2512 19 6 4.8810 -2.5468 -3.7079 20 6 6.0340 -3.1097 -4.5411 21 6 5.5287 -1.6874 -4.7954 22 6 2.2011 -1.2009 0.0005 23 8 1.5234 -2.3788 0.0016 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6583 2.1316 -0.0007 28 1 4.1193 2.1331 0.0001 29 1 5.3552 0.0043 -0.0087 30 1 5.3634 -2.3290 0.3535 31 1 3.8478 -3.2099 0.6623 32 1 5.1811 -4.7002 -2.3814 33 1 5.7791 -4.4789 -0.7195 34 1 3.3112 -8.4926 -0.3732 35 1 4.9075 -1.1398 -2.0768 36 1 6.2354 -2.3248 -2.0475 37 1 3.8819 -2.9366 -3.9030 38 1 7.0016 -3.2200 -4.0516 39 1 5.7936 -3.8697 -5.2846 40 1 4.9560 -1.5121 -5.7062 41 1 6.1641 -0.8624 -4.4731 42 1 1.3269 -2.7203 -0.8815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180057365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:50 Heat of formation + Delta-G solvation = -12.369081 kcal Electronic energy + Delta-G solvation = -21726.561813 eV Core-core repulsion = 18671.551681 eV Total energy + Delta-G solvation = -3055.010132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01535 -39.14517 -37.38141 -36.99037 -34.72627 -33.59020 -31.43765 -29.96089 -27.95467 -27.65140 -25.46453 -23.24637 -22.95174 -22.56523 -21.47274 -21.03667 -19.09588 -18.82250 -17.19772 -16.91017 -16.52989 -16.45214 -16.14585 -15.54839 -15.27863 -15.08487 -14.69021 -14.33702 -14.27643 -14.07161 -13.53772 -13.48108 -13.45474 -12.96155 -12.81945 -12.63996 -12.48223 -12.44712 -12.32517 -12.11886 -11.92597 -11.77462 -11.47426 -11.12384 -11.11491 -10.77644 -10.68850 -9.54083 -9.32974 -9.01793 -8.23549 -6.24726 0.41758 0.42749 1.32875 1.34475 1.44914 2.35684 2.69306 2.94041 3.09072 3.30582 3.56315 3.80529 3.90311 4.00655 4.06731 4.14572 4.24011 4.36990 4.48270 4.50632 4.59970 4.66891 4.70093 4.78552 4.81424 4.83360 4.89147 4.95588 4.98554 5.04936 5.09133 5.16060 5.27458 5.35406 5.39736 5.56589 5.58641 5.61552 5.74013 6.03375 6.05736 6.39056 6.69632 6.83527 6.95001 7.37772 8.93026 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.006326 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.535961 B = 4424.904753 C = 5573.902792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.123 4.123 5 C -0.114 4.114 6 C -0.110 4.110 7 C 0.110 3.890 8 N -0.524 5.524 9 C 0.175 3.825 10 C -0.503 4.503 11 H 0.044 0.956 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.938 3.062 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.247 1.247 18 C 0.086 3.914 19 C -0.156 4.156 20 C -0.193 4.193 21 C -0.152 4.152 22 C 0.103 3.897 23 O -0.507 6.507 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.036 0.964 33 H -0.023 1.023 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.025 0.975 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.731 19.846 -4.745 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.127 4.127 4 C -0.141 4.141 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.018 4.018 8 N -0.248 5.248 9 C 0.048 3.952 10 C -0.541 4.541 11 H 0.062 0.938 12 C -0.189 4.189 13 N -0.590 5.590 14 Si 0.762 3.238 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.171 1.171 18 C -0.042 4.042 19 C -0.175 4.175 20 C -0.230 4.230 21 C -0.190 4.190 22 C 0.058 3.942 23 O -0.318 6.318 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.171 0.829 28 H 0.172 0.828 29 H 0.151 0.849 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.054 0.946 33 H -0.005 1.005 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.043 0.957 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.250 19.688 -4.287 20.275 hybrid contribution 1.170 -1.481 -0.085 1.889 sum 3.420 18.208 -4.372 19.035 Atomic orbital electron populations 1.20669 0.89705 1.03133 1.02819 1.20509 0.97729 0.92398 1.02072 1.21246 0.94494 0.97303 0.99633 1.21398 0.94348 0.98255 1.00064 1.21127 1.00342 0.91330 1.00431 1.20226 0.93574 0.95196 1.02072 1.20689 0.96861 0.93211 0.90991 1.61809 1.53276 1.01893 1.07785 1.19944 0.92862 0.86510 0.95926 1.21291 1.01453 0.90960 1.40426 0.93775 1.25764 1.00224 0.97379 0.95521 1.70056 1.36013 1.03617 1.49353 0.85857 0.80236 0.78085 0.79639 1.19796 1.20856 1.17110 1.21717 0.94259 0.97345 0.90863 1.22179 0.97755 1.05583 0.92001 1.23078 0.98327 0.97889 1.03677 1.23017 1.02971 0.93506 0.99462 1.18472 0.89605 0.85516 1.00567 1.84705 1.76133 1.36682 1.34266 0.90539 0.92602 0.89580 0.82933 0.82779 0.84924 0.94838 0.92560 0.94573 1.00516 0.92731 0.89639 0.95659 0.89110 0.89258 0.89082 0.87570 0.87567 0.74725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 9.79 71.23 0.70 -1.68 16 2 C -0.13 -3.40 5.89 -19.77 -0.12 -3.52 16 3 C -0.11 -2.31 9.70 22.25 0.22 -2.10 16 4 C -0.12 -2.54 10.04 22.28 0.22 -2.32 16 5 C -0.11 -2.94 8.30 22.25 0.18 -2.76 16 6 C -0.11 -3.66 4.65 -19.77 -0.09 -3.75 16 7 C 0.11 4.36 4.58 85.55 0.39 4.75 16 8 N -0.52 -21.44 4.38 -905.38 -3.96 -25.41 16 9 C 0.17 8.43 3.67 85.56 0.31 8.74 16 10 C -0.50 -29.28 9.14 25.60 0.23 -29.04 16 11 H 0.04 2.87 7.93 -2.91 -0.02 2.84 16 12 C 0.01 0.46 5.47 84.65 0.46 0.93 16 13 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 14 Si 0.94 44.90 27.53 68.60 1.89 46.79 16 15 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 17 H -0.25 -11.00 6.45 99.48 0.64 -10.36 16 18 C 0.09 2.83 5.10 86.30 0.44 3.27 16 19 C -0.16 -4.85 4.96 -10.80 -0.05 -4.91 16 20 C -0.19 -5.34 9.97 30.62 0.31 -5.04 16 21 C -0.15 -3.49 10.25 30.62 0.31 -3.18 16 22 C 0.10 3.51 6.65 22.51 0.15 3.66 16 23 O -0.51 -19.68 11.78 -92.43 -1.09 -20.77 16 24 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.05 1.44 7.53 -2.38 -0.02 1.42 16 26 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 27 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 28 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.13 2.97 8.04 -2.91 -0.02 2.94 16 30 H 0.03 1.24 7.99 -2.39 -0.02 1.22 16 31 H 0.06 2.70 7.05 -2.39 -0.02 2.69 16 32 H 0.04 1.74 5.76 -2.39 -0.01 1.73 16 33 H -0.02 -1.11 7.60 -2.38 -0.02 -1.13 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.09 2.54 5.86 -2.39 -0.01 2.53 16 36 H 0.03 0.82 7.79 -2.39 -0.02 0.80 16 37 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.09 2.44 8.03 -2.39 -0.02 2.42 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 40 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.40 14.28 9.06 -74.06 -0.67 13.61 16 Total: -1.00 -69.38 342.37 1.08 -68.30 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.27 Total: 28.11 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 3.67 Total: -36.94 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -3.66 Total: -85.49 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.09 Total: -20.77 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.89 Total: 46.79 kcal Total: -69.38 1.08 -68.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180057365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.930 kcal (2) G-P(sol) polarization free energy of solvation -69.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds