Wall clock time and date at job start Mon Mar 30 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38161 * 120.02746 * 2 1 4 4 C 1.38243 * 120.05842 * 180.02562 * 3 2 1 5 5 C 1.38294 * 120.10980 * 359.97438 * 4 3 2 6 6 C 1.38120 * 120.05354 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02722 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47375 * 260.00286 * 7 6 5 9 9 C 1.36935 * 119.99877 * 270.00185 * 8 7 6 10 10 H 1.08004 * 119.99866 * 140.18551 * 9 8 7 11 11 C 1.38807 * 120.00053 * 320.17679 * 9 8 7 12 12 N 1.31619 * 120.00153 * 341.22437 * 11 9 8 13 13 Si 1.86804 * 119.99952 * 161.21872 * 11 9 8 14 14 H 1.48501 * 109.46778 * 60.00376 * 13 11 9 15 15 H 1.48501 * 109.47193 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47101 * 300.00793 * 13 11 9 17 17 C 1.46500 * 119.99956 * 89.99942 * 8 7 6 18 18 C 1.55236 * 110.58473 * 240.07390 * 17 8 7 19 19 C 1.54878 * 102.58848 * 203.33847 * 18 17 8 20 20 C 1.54264 * 104.31746 * 37.92997 * 19 18 17 21 21 C 1.53874 * 106.59638 * 336.32396 * 20 19 18 22 22 C 1.38706 * 120.02994 * 180.24885 * 2 1 3 23 23 O 1.35905 * 120.05459 * 0.02562 * 22 2 1 24 24 H 1.08994 * 109.46663 * 90.00166 * 1 2 3 25 25 H 1.08998 * 109.46994 * 210.00490 * 1 2 3 26 26 H 1.09001 * 109.47116 * 330.00073 * 1 2 3 27 27 H 1.08004 * 119.97173 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.94834 * 179.97438 * 4 3 2 29 29 H 1.07996 * 119.97242 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.46879 * 140.00474 * 7 6 5 31 31 H 1.09004 * 109.47116 * 20.00348 * 7 6 5 32 32 H 0.97003 * 120.00150 * 179.97438 * 12 11 9 33 33 H 1.09007 * 110.43123 * 2.65882 * 17 8 7 34 34 H 1.09003 * 110.90063 * 85.04167 * 18 17 8 35 35 H 1.09008 * 110.76227 * 321.57235 * 18 17 8 36 36 H 1.09002 * 110.48803 * 279.18408 * 19 18 17 37 37 H 1.09006 * 110.48743 * 156.66999 * 19 18 17 38 38 H 1.09000 * 110.03393 * 95.60711 * 20 19 18 39 39 H 1.08998 * 110.03724 * 216.99430 * 20 19 18 40 40 H 1.09005 * 110.03551 * 119.28494 * 21 20 19 41 41 H 1.09004 * 110.03702 * 240.66443 * 21 20 19 42 42 H 0.96708 * 113.99855 * 270.24615 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2753 0.0010 -0.0005 6 6 3.5887 -1.1975 0.0005 7 6 4.3460 -2.5004 -0.0001 8 7 4.3826 -3.0435 -1.3602 9 6 3.3902 -3.8841 -1.7887 10 1 3.0062 -3.7977 -2.7945 11 6 2.8778 -4.8473 -0.9305 12 7 3.5608 -5.2100 0.1345 13 14 1.2188 -5.6285 -1.2870 14 1 1.2662 -6.3110 -2.6050 15 1 0.9000 -6.6188 -0.2273 16 1 0.1713 -4.5762 -1.3119 17 6 5.4808 -2.6872 -2.2619 18 6 4.9369 -1.9766 -3.5304 19 6 6.0596 -2.2299 -4.5668 20 6 6.5361 -3.6667 -4.2696 21 6 6.1682 -3.9574 -2.8040 22 6 2.2012 -1.2009 -0.0052 23 8 1.5234 -2.3788 -0.0109 24 1 -0.3632 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6584 2.1315 -0.0004 28 1 4.1195 2.1331 -0.0010 29 1 5.3552 0.0041 -0.0005 30 1 3.8487 -3.2100 0.6612 31 1 5.3639 -2.3292 0.3503 32 1 3.2026 -5.8829 0.7345 33 1 6.2032 -2.0518 -1.7493 34 1 4.8085 -0.9088 -3.3531 35 1 4.0008 -2.4305 -3.8561 36 1 6.8754 -1.5208 -4.4265 37 1 5.6654 -2.1610 -5.5808 38 1 6.0298 -4.3719 -4.9286 39 1 7.6153 -3.7379 -4.4054 40 1 5.4832 -4.8038 -2.7518 41 1 7.0687 -4.1703 -2.2280 42 1 1.3236 -2.7219 0.8710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180360954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:52 Heat of formation + Delta-G solvation = -10.020341 kcal Electronic energy + Delta-G solvation = -22549.708936 eV Core-core repulsion = 19494.800653 eV Total energy + Delta-G solvation = -3054.908283 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.29195 -37.51136 -35.72796 -34.46390 -32.26324 -30.91051 -29.53807 -27.79720 -26.59429 -26.33291 -25.40122 -22.61631 -21.13372 -19.98983 -19.72751 -19.04403 -17.44449 -16.24958 -15.55248 -15.13439 -14.95982 -14.69138 -14.31587 -14.01862 -13.42117 -13.09884 -12.77341 -12.69874 -12.53097 -12.41951 -12.09032 -11.54124 -11.29950 -11.25997 -10.97777 -10.91383 -10.65464 -10.51699 -10.48021 -10.31209 -10.22088 -10.00392 -9.90766 -9.62863 -9.48360 -9.36944 -8.31359 -8.00250 -7.75451 -6.41609 -5.67850 -3.24827 1.92471 2.00421 3.45779 3.49600 3.60442 4.27044 4.62086 5.08125 5.34059 5.37191 5.40832 5.42660 5.47278 5.53947 5.68565 5.73448 5.85493 5.95939 6.02481 6.14728 6.21855 6.25746 6.27602 6.31538 6.43014 6.50984 6.57803 6.64489 6.64772 6.70188 6.77817 6.90389 7.01929 7.08867 7.11061 7.20013 7.38711 7.44571 7.52233 7.69786 7.95546 8.59211 8.66288 9.29890 9.92836 10.49916 11.32782 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.009375 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.038802 B = 2986.011583 C = 4379.419953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.126 4.126 3 C -0.130 4.130 4 C -0.137 4.137 5 C -0.118 4.118 6 C -0.098 4.098 7 C 0.182 3.818 8 N -0.562 5.562 9 C -0.227 4.227 10 H 0.052 0.948 11 C 0.032 3.968 12 N -0.894 5.894 13 Si 0.891 3.109 14 H -0.289 1.289 15 H -0.296 1.296 16 H -0.274 1.274 17 C 0.175 3.825 18 C -0.134 4.134 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.131 4.131 22 C 0.128 3.872 23 O -0.461 6.461 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.029 0.971 32 H 0.252 0.748 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 8.920 -0.132 8.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.127 4.127 3 C -0.149 4.149 4 C -0.155 4.155 5 C -0.137 4.137 6 C -0.102 4.102 7 C 0.056 3.944 8 N -0.279 5.279 9 C -0.357 4.357 10 H 0.070 0.930 11 C -0.167 4.167 12 N -0.537 5.537 13 Si 0.721 3.279 14 H -0.215 1.215 15 H -0.223 1.223 16 H -0.200 1.200 17 C 0.067 3.933 18 C -0.174 4.174 19 C -0.160 4.160 20 C -0.158 4.158 21 C -0.170 4.170 22 C 0.082 3.918 23 O -0.269 6.269 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.360 8.785 -0.611 8.813 hybrid contribution -0.925 -0.338 0.216 1.008 sum -0.565 8.447 -0.396 8.475 Atomic orbital electron populations 1.20552 0.91735 1.01591 1.01861 1.20195 0.95976 0.93150 1.03335 1.20624 0.94076 0.96415 1.03776 1.20931 0.94136 0.97523 1.02886 1.20902 0.99164 0.91900 1.01710 1.21661 0.94107 0.98223 0.96185 1.19912 0.95422 0.89322 0.89760 1.43705 1.23261 1.50878 1.10048 1.18644 1.10724 1.07833 0.98497 0.93049 1.24973 0.98005 0.95707 0.98058 1.69968 1.36375 1.31546 1.15814 0.86579 0.86030 0.78363 0.76928 1.21546 1.22285 1.19970 1.21283 0.88980 0.92938 0.90082 1.22942 0.98303 0.99289 0.96841 1.22276 0.98450 0.96725 0.98595 1.22067 0.99046 0.96430 0.98249 1.22497 0.99789 1.01611 0.93120 1.18152 0.89643 0.84833 0.99194 1.85133 1.75640 1.35101 1.31002 0.91778 0.91801 0.92642 0.87181 0.87243 0.87044 0.87903 0.95279 0.93859 0.93397 0.93391 0.91129 0.92830 0.93079 0.92790 0.93412 0.89717 0.93811 0.77687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.79 36.01 0.35 -1.13 16 2 C -0.13 -2.20 5.89 -104.47 -0.62 -2.81 16 3 C -0.13 -2.07 9.70 -39.61 -0.38 -2.46 16 4 C -0.14 -2.17 10.04 -39.56 -0.40 -2.57 16 5 C -0.12 -2.10 9.67 -39.60 -0.38 -2.48 16 6 C -0.10 -1.99 5.48 -104.47 -0.57 -2.56 16 7 C 0.18 4.11 5.09 -5.19 -0.03 4.08 16 8 N -0.56 -13.31 2.43 -164.92 -0.40 -13.71 16 9 C -0.23 -5.91 6.83 -15.06 -0.10 -6.01 16 10 H 0.05 1.42 6.72 -52.48 -0.35 1.06 16 11 C 0.03 0.84 3.98 -17.43 -0.07 0.77 16 12 N -0.89 -24.20 11.47 55.49 0.64 -23.56 16 13 Si 0.89 21.44 29.04 -169.99 -4.94 16.51 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.17 3.67 3.39 -66.08 -0.22 3.44 16 18 C -0.13 -2.61 6.47 -24.56 -0.16 -2.77 16 19 C -0.12 -2.00 6.82 -25.08 -0.17 -2.18 16 20 C -0.12 -2.03 6.80 -25.61 -0.17 -2.21 16 21 C -0.13 -2.66 6.41 -25.61 -0.16 -2.82 16 22 C 0.13 2.55 6.65 -39.22 -0.26 2.29 16 23 O -0.46 -9.64 9.22 -19.44 -0.18 -9.82 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.93 7.54 -51.93 -0.39 0.54 16 26 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.11 1.83 8.04 -52.49 -0.42 1.41 16 30 H 0.10 2.58 5.30 -51.93 -0.28 2.30 16 31 H 0.03 0.63 7.79 -51.93 -0.40 0.23 16 32 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.05 0.97 7.84 -51.92 -0.41 0.56 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.53 6.63 -51.92 -0.34 1.19 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 2.00 6.92 -51.93 -0.36 1.64 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.37 6.59 9.06 45.56 0.41 7.00 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -27.98 331.84 -9.14 -37.12 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.90 Total: 7.88 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -3.35 Total: -19.42 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.24 Total: -37.27 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.18 Total: -9.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.94 Total: 16.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.98 -9.14 -37.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180360954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.095 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds