Wall clock time and date at job start Mon Mar 30 2020 02:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47412 * 2 1 4 4 C 1.38237 * 119.99842 * 89.99927 * 3 2 1 5 5 C 1.38234 * 119.99531 * 180.02562 * 4 3 2 6 6 C 1.38231 * 120.00578 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00277 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47269 * 89.99552 * 7 6 5 9 9 O 1.21278 * 119.99866 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00101 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99874 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47391 * 325.00213 * 11 10 8 13 13 C 1.50699 * 109.47060 * 205.00285 * 11 10 8 14 14 H 1.07999 * 120.00019 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 11 10 16 16 N 1.31513 * 119.99969 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 119.99840 * 359.97438 * 15 13 11 18 18 H 1.48497 * 109.47167 * 89.99961 * 17 15 13 19 19 H 1.48500 * 109.47028 * 210.00109 * 17 15 13 20 20 H 1.48497 * 109.47377 * 330.00144 * 17 15 13 21 21 C 1.53000 * 109.46840 * 85.00543 * 11 10 8 22 22 C 1.53005 * 109.46867 * 294.99527 * 21 11 10 23 23 C 1.38242 * 119.99469 * 0.24553 * 6 5 4 24 24 C 1.38229 * 120.00324 * 359.49974 * 23 6 5 25 25 H 1.09006 * 109.46823 * 299.99882 * 1 2 3 26 26 H 1.09000 * 109.47171 * 59.99359 * 1 2 3 27 27 H 1.08998 * 109.47286 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47204 * 240.00244 * 2 1 3 29 29 H 1.09004 * 109.47362 * 120.00165 * 2 1 3 30 30 H 1.07992 * 120.00146 * 0.02562 * 4 3 2 31 31 H 1.08008 * 119.99824 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47133 * 329.99752 * 7 6 5 33 33 H 1.09003 * 109.47048 * 209.99264 * 7 6 5 34 34 H 0.97002 * 119.99716 * 0.02562 * 10 8 7 35 35 H 0.96999 * 119.99716 * 179.97438 * 16 15 13 36 36 H 1.08990 * 109.47170 * 54.99738 * 21 11 10 37 37 H 1.09001 * 109.46952 * 174.99815 * 21 11 10 38 38 H 1.09004 * 109.46908 * 180.02562 * 22 21 11 39 39 H 1.09000 * 109.47443 * 300.00098 * 22 21 11 40 40 H 1.09001 * 109.47099 * 60.00379 * 22 21 11 41 41 H 1.08000 * 119.99566 * 179.72884 * 23 6 5 42 42 H 1.07996 * 120.00567 * 180.22565 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7232 3.3759 1.1971 6 6 2.9526 4.0279 0.0000 7 6 3.4539 5.4490 0.0000 8 6 4.9609 5.4501 -0.0005 9 8 5.5681 4.4003 -0.0013 10 7 5.6340 6.6179 -0.0011 11 6 7.0990 6.6189 -0.0010 12 1 7.4629 5.7777 0.5889 13 6 7.6003 7.9073 0.5988 14 1 6.8980 8.6507 0.9457 15 6 8.9557 8.1369 0.7048 16 7 9.3932 9.2610 1.2287 17 14 10.1705 6.8507 0.1055 18 1 10.4916 7.1005 -1.3227 19 1 11.4139 6.9296 0.9135 20 1 9.5718 5.4993 0.2491 21 6 7.6090 6.4929 -1.4380 22 6 7.2053 5.1303 -2.0048 23 6 2.7168 3.3781 -1.1971 24 6 2.2615 2.0729 -1.1972 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0832 1.5632 2.1324 31 1 2.9028 3.8852 2.1325 32 1 3.0905 5.9625 0.8902 33 1 3.0899 5.9627 -0.8898 34 1 5.1483 7.4576 -0.0008 35 1 10.3467 9.4223 1.3036 36 1 7.1739 7.2838 -2.0487 37 1 8.6953 6.5828 -1.4471 38 1 7.5691 5.0403 -3.0284 39 1 7.6405 4.3392 -1.3940 40 1 6.1190 5.0403 -1.9956 41 1 2.8919 3.8890 -2.1324 42 1 2.0808 1.5640 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183942371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:03 Heat of formation + Delta-G solvation = -50.198765 kcal Electronic energy + Delta-G solvation = -21026.408838 eV Core-core repulsion = 17969.758287 eV Total energy + Delta-G solvation = -3056.650550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06266 -39.95458 -37.13746 -35.42397 -34.38333 -33.37095 -31.90465 -31.76513 -29.54961 -27.90692 -24.74856 -24.08059 -23.59600 -22.49895 -21.44299 -21.05311 -19.10887 -17.69527 -17.45584 -17.02184 -16.75273 -16.20103 -15.95586 -15.81802 -15.09060 -14.73589 -14.59456 -14.56750 -14.27503 -14.05219 -13.79292 -13.71910 -13.65322 -13.10166 -12.83709 -12.77439 -12.73583 -12.49781 -12.37536 -12.02316 -11.86203 -11.66837 -11.62111 -11.38205 -11.23017 -10.86689 -10.65474 -9.75403 -9.70913 -9.35883 -8.38951 -6.43773 0.45157 0.57445 1.25203 1.33620 1.43498 1.87291 2.24937 2.51466 2.96892 3.00596 3.76482 3.92875 3.98604 4.17571 4.19068 4.24163 4.25270 4.33037 4.49311 4.52233 4.53880 4.62572 4.65841 4.77403 4.81082 4.85773 5.00590 5.08263 5.10335 5.12841 5.21445 5.24603 5.26967 5.40757 5.42620 5.52496 5.56207 5.71236 5.74908 5.77000 6.15545 6.19104 6.58930 6.96121 7.20274 7.55870 8.76323 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035623 B = 0.003700 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.828158 B = 7566.592142 C = 7748.254144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.129 4.129 5 C -0.120 4.120 6 C -0.079 4.079 7 C -0.095 4.095 8 C 0.503 3.497 9 O -0.578 6.578 10 N -0.704 5.704 11 C 0.250 3.750 12 H 0.018 0.982 13 C -0.532 4.532 14 H 0.058 0.942 15 C 0.029 3.971 16 N -0.934 5.934 17 Si 0.936 3.064 18 H -0.260 1.260 19 H -0.294 1.294 20 H -0.263 1.263 21 C -0.137 4.137 22 C -0.132 4.132 23 C -0.115 4.115 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.133 0.867 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.407 0.593 35 H 0.270 0.730 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.057 0.943 39 H 0.032 0.968 40 H 0.057 0.943 41 H 0.128 0.872 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.078 -14.232 -5.148 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.147 4.147 5 C -0.138 4.138 6 C -0.079 4.079 7 C -0.135 4.135 8 C 0.291 3.709 9 O -0.459 6.459 10 N -0.353 5.353 11 C 0.145 3.855 12 H 0.036 0.964 13 C -0.570 4.570 14 H 0.076 0.924 15 C -0.170 4.170 16 N -0.573 5.573 17 Si 0.763 3.237 18 H -0.185 1.185 19 H -0.221 1.221 20 H -0.188 1.188 21 C -0.175 4.175 22 C -0.189 4.189 23 C -0.133 4.133 24 C -0.145 4.145 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.242 0.758 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.146 0.854 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.491 -14.855 -5.096 23.507 hybrid contribution 0.992 0.438 0.117 1.091 sum -16.499 -14.417 -4.978 22.469 Atomic orbital electron populations 1.21717 0.93818 1.02402 1.01976 1.20577 0.96846 0.91324 1.03336 1.20185 0.98931 0.97233 0.92992 1.21196 1.00373 0.94639 0.98452 1.21186 0.99236 0.95627 0.97736 1.19456 0.99165 0.95408 0.93907 1.20717 0.89894 0.95669 1.07171 1.21104 0.90888 0.83363 0.75582 1.90672 1.71258 1.32630 1.51316 1.46031 1.07302 1.08591 1.73413 1.18726 0.78633 0.95474 0.92641 0.96435 1.21322 0.92748 1.02357 1.40555 0.92433 1.25535 0.99970 0.96795 0.94726 1.69974 1.15417 1.25951 1.45981 0.86047 0.78397 0.80668 0.78563 1.18530 1.22100 1.18817 1.22200 0.99231 0.97726 0.98366 1.21743 1.01552 0.96150 0.99455 1.21186 0.99031 0.95490 0.97640 1.21216 1.00266 0.94654 0.98379 0.92887 0.92727 0.91086 0.90480 0.90675 0.84878 0.85991 0.86297 0.85654 0.75809 0.92106 0.91181 0.94076 0.92425 0.94898 0.92453 0.85395 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 71.98 0.71 -1.13 16 2 C -0.08 -1.32 6.06 29.85 0.18 -1.14 16 3 C -0.09 -2.03 5.13 -19.86 -0.10 -2.13 16 4 C -0.13 -3.00 9.70 22.27 0.22 -2.79 16 5 C -0.12 -3.12 9.70 22.27 0.22 -2.91 16 6 C -0.08 -2.09 4.37 -19.87 -0.09 -2.18 16 7 C -0.10 -2.34 5.83 29.10 0.17 -2.17 16 8 C 0.50 17.77 6.39 87.66 0.56 18.33 16 9 O -0.58 -25.03 13.17 -3.02 -0.04 -25.07 16 10 N -0.70 -26.69 5.02 -446.09 -2.24 -28.93 16 11 C 0.25 11.80 1.83 44.25 0.08 11.88 16 12 H 0.02 0.95 6.64 -2.39 -0.02 0.93 16 13 C -0.53 -28.98 9.31 25.60 0.24 -28.74 16 14 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 15 C 0.03 1.67 5.45 84.65 0.46 2.13 16 16 N -0.93 -56.30 13.96 21.45 0.30 -56.00 16 17 Si 0.94 45.40 24.41 68.60 1.67 47.07 16 18 H -0.26 -11.83 6.83 99.48 0.68 -11.16 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.26 -12.82 6.53 99.48 0.65 -12.17 16 21 C -0.14 -5.92 5.11 30.60 0.16 -5.76 16 22 C -0.13 -5.13 8.51 71.98 0.61 -4.52 16 23 C -0.12 -2.86 9.70 22.27 0.22 -2.64 16 24 C -0.13 -2.85 9.70 22.27 0.22 -2.64 16 25 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 1.10 8.09 -2.39 -0.02 1.09 16 29 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 30 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.12 2.43 8.09 -2.39 -0.02 2.41 16 33 H 0.13 2.36 8.08 -2.39 -0.02 2.34 16 34 H 0.41 13.32 8.54 -92.71 -0.79 12.52 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.04 1.87 3.21 -2.39 -0.01 1.87 16 38 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.03 1.39 7.85 -2.39 -0.02 1.37 16 40 H 0.06 2.16 5.64 -2.39 -0.01 2.15 16 41 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -68.69 337.19 3.67 -65.02 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.13 Total: 24.29 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.85 Total: -26.39 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -1.94 Total: -84.93 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.04 Total: -25.07 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.67 Total: 47.07 kcal Total: -68.69 3.67 -65.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183942371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.824 kcal (2) G-P(sol) polarization free energy of solvation -68.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds