Wall clock time and date at job start Mon Mar 30 2020 02:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50690 * 109.47108 * 2 1 4 4 C 1.38243 * 120.00315 * 89.99820 * 3 2 1 5 5 C 1.38233 * 120.00259 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99918 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99822 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46942 * 90.00095 * 7 6 5 9 9 O 1.21281 * 120.00435 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00060 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00478 * 179.97438 * 10 8 7 12 12 H 1.09010 * 109.46851 * 35.00199 * 11 10 8 13 13 C 1.50704 * 109.47419 * 154.99786 * 11 10 8 14 14 H 1.08003 * 119.99305 * 35.00937 * 13 11 10 15 15 C 1.37874 * 120.00139 * 215.00925 * 13 11 10 16 16 N 1.31515 * 119.99846 * 184.83537 * 15 13 11 17 17 Si 1.86798 * 120.00098 * 4.82881 * 15 13 11 18 18 H 1.48494 * 109.47402 * 84.86213 * 17 15 13 19 19 H 1.48503 * 109.47211 * 204.86567 * 17 15 13 20 20 H 1.48503 * 109.47036 * 324.86284 * 17 15 13 21 21 C 1.53000 * 109.47344 * 275.00467 * 11 10 8 22 22 C 1.52999 * 109.47220 * 65.68934 * 21 11 10 23 23 C 1.38237 * 120.00006 * 0.25275 * 6 5 4 24 24 C 1.38232 * 119.99978 * 359.49449 * 23 6 5 25 25 H 1.09006 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46961 * 300.00069 * 1 2 3 27 27 H 1.09000 * 109.46706 * 60.00183 * 1 2 3 28 28 H 1.09000 * 109.47411 * 239.99518 * 2 1 3 29 29 H 1.09000 * 109.46706 * 119.99816 * 2 1 3 30 30 H 1.08003 * 119.99681 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.99948 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.46730 * 329.99979 * 7 6 5 33 33 H 1.09004 * 109.46769 * 210.00084 * 7 6 5 34 34 H 0.97005 * 120.00003 * 0.02562 * 10 8 7 35 35 H 0.97005 * 119.99726 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.46943 * 185.69192 * 21 11 10 37 37 H 1.08996 * 109.46828 * 305.68588 * 21 11 10 38 38 H 1.09003 * 109.46911 * 299.99730 * 22 21 11 39 39 H 1.08996 * 109.47503 * 60.00067 * 22 21 11 40 40 H 1.09000 * 109.46870 * 180.02562 * 22 21 11 41 41 H 1.07997 * 119.99513 * 179.72770 * 23 6 5 42 42 H 1.08000 * 120.00172 * 180.25712 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9544 4.0272 0.0000 7 6 3.4568 5.4480 0.0000 8 6 4.9637 5.4480 0.0000 9 8 5.5702 4.3977 0.0005 10 7 5.6377 6.6151 -0.0005 11 6 7.1026 6.6152 0.0001 12 1 7.4662 5.7730 -0.5887 13 6 7.6052 7.9025 -0.6011 14 1 7.0628 8.8222 -0.4386 15 6 8.7574 7.9061 -1.3583 16 7 9.2482 9.0422 -1.8033 17 14 9.6213 6.2974 -1.7521 18 1 9.0003 5.6830 -2.9529 19 1 11.0587 6.5594 -2.0174 20 1 9.4917 5.3708 -0.5989 21 6 7.6121 6.4904 1.4374 22 6 7.2221 5.1219 1.9997 23 6 2.7186 3.3774 -1.1972 24 6 2.2623 2.0726 -1.1972 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0831 1.5632 2.1325 31 1 2.9036 3.8848 2.1325 32 1 3.0934 5.9618 0.8900 33 1 3.0934 5.9618 -0.8900 34 1 5.1527 7.4553 -0.0005 35 1 10.0591 9.0447 -2.3358 36 1 8.6973 6.5918 1.4482 37 1 7.1677 7.2749 2.0498 38 1 6.1368 5.0206 1.9888 39 1 7.6664 4.3374 1.3873 40 1 7.5847 5.0332 3.0238 41 1 2.8944 3.8881 -2.1324 42 1 2.0820 1.5636 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183942386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:07 Heat of formation + Delta-G solvation = -58.043651 kcal Electronic energy + Delta-G solvation = -21027.244862 eV Core-core repulsion = 17970.254131 eV Total energy + Delta-G solvation = -3056.990730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.03347 -39.93357 -36.99368 -35.41948 -34.37996 -33.29963 -31.87401 -31.76813 -29.55492 -27.88092 -24.81316 -24.06990 -23.59898 -22.21789 -21.36048 -21.08252 -19.21212 -17.64558 -17.44649 -16.94384 -16.72388 -16.11413 -15.96156 -15.80808 -14.82997 -14.78589 -14.60595 -14.56016 -14.27189 -13.98853 -13.80290 -13.70314 -13.66955 -13.02243 -12.87485 -12.81137 -12.53748 -12.49157 -12.33036 -12.02766 -11.88556 -11.69230 -11.65400 -11.62334 -11.20143 -10.84539 -10.64385 -9.75564 -9.64318 -9.35974 -8.39910 -6.44748 0.45084 0.57027 1.26876 1.31547 1.42591 1.89827 2.25650 2.51848 2.93414 3.10735 3.76940 3.92577 3.98695 4.18115 4.23104 4.24647 4.32600 4.42215 4.51425 4.53270 4.57649 4.62885 4.65871 4.77257 4.80806 4.84699 5.07908 5.09939 5.10761 5.20666 5.26394 5.27227 5.29325 5.40518 5.43369 5.55900 5.56637 5.74860 5.76568 5.83024 6.14616 6.18816 6.60976 6.99910 7.21785 7.58211 8.75258 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.003875 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.719521 B = 7224.340751 C = 7348.591946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.078 4.078 7 C -0.096 4.096 8 C 0.501 3.499 9 O -0.581 6.581 10 N -0.706 5.706 11 C 0.242 3.758 12 H 0.026 0.974 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.034 3.966 16 N -0.931 5.931 17 Si 0.924 3.076 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.258 1.258 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.121 4.121 24 C -0.129 4.129 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.405 0.595 35 H 0.270 0.730 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.029 0.971 40 H 0.055 0.945 41 H 0.121 0.879 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.760 -13.929 5.268 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.145 4.145 5 C -0.133 4.133 6 C -0.079 4.079 7 C -0.136 4.136 8 C 0.288 3.712 9 O -0.462 6.462 10 N -0.356 5.356 11 C 0.138 3.862 12 H 0.044 0.956 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.167 4.167 16 N -0.569 5.569 17 Si 0.749 3.251 18 H -0.202 1.202 19 H -0.203 1.203 20 H -0.182 1.182 21 C -0.162 4.162 22 C -0.189 4.189 23 C -0.139 4.139 24 C -0.147 4.147 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.240 0.760 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.167 -14.567 5.162 23.099 hybrid contribution 0.802 0.256 -0.569 1.016 sum -16.365 -14.311 4.593 22.220 Atomic orbital electron populations 1.21717 0.93809 1.02406 1.01974 1.20574 0.96856 0.91306 1.03333 1.20181 0.98963 0.97239 0.92976 1.21220 1.00206 0.94673 0.98377 1.21180 0.99009 0.95508 0.97624 1.19468 0.99071 0.95448 0.93896 1.20729 0.90144 0.95615 1.07071 1.21113 0.90842 0.83544 0.75683 1.90664 1.71316 1.32634 1.51594 1.46359 1.07763 1.08404 1.73080 1.18856 0.78514 0.95290 0.93544 0.95572 1.21247 1.09437 0.94059 1.31532 0.92442 1.25570 0.97612 0.98592 0.94882 1.69978 1.22774 1.27281 1.36906 0.86097 0.78186 0.81225 0.79581 1.20180 1.20337 1.18188 1.21978 0.99944 0.96772 0.97466 1.21752 1.01243 0.96530 0.99361 1.21184 0.99343 0.95648 0.97722 1.21192 1.00409 0.94597 0.98458 0.91073 0.92707 0.92912 0.90702 0.90453 0.84543 0.85401 0.85706 0.86426 0.75986 0.92082 0.93451 0.91833 0.92892 0.95224 0.92556 0.86079 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.90 71.98 0.71 -1.16 16 2 C -0.08 -1.34 6.06 29.85 0.18 -1.16 16 3 C -0.09 -2.06 5.13 -19.87 -0.10 -2.16 16 4 C -0.13 -2.88 9.70 22.27 0.22 -2.66 16 5 C -0.12 -2.90 9.70 22.27 0.22 -2.68 16 6 C -0.08 -2.12 4.37 -19.86 -0.09 -2.20 16 7 C -0.10 -2.42 5.83 29.10 0.17 -2.25 16 8 C 0.50 17.92 6.42 87.66 0.56 18.49 16 9 O -0.58 -25.39 13.18 -3.03 -0.04 -25.43 16 10 N -0.71 -26.92 5.03 -446.10 -2.24 -29.16 16 11 C 0.24 11.29 1.89 44.25 0.08 11.37 16 12 H 0.03 1.36 4.73 -2.38 -0.01 1.35 16 13 C -0.52 -28.21 9.05 25.60 0.23 -27.98 16 14 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 15 C 0.03 1.90 5.47 84.65 0.46 2.37 16 16 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 17 Si 0.92 45.23 26.99 68.60 1.85 47.09 16 18 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.26 -12.43 6.82 99.48 0.68 -11.75 16 21 C -0.12 -5.20 5.59 30.59 0.17 -5.03 16 22 C -0.13 -5.10 8.53 71.98 0.61 -4.48 16 23 C -0.12 -3.22 9.70 22.27 0.22 -3.00 16 24 C -0.13 -3.06 9.70 22.27 0.22 -2.85 16 25 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 29 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 30 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 31 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.12 2.42 8.09 -2.39 -0.02 2.40 16 33 H 0.12 2.49 8.08 -2.39 -0.02 2.47 16 34 H 0.41 13.35 8.59 -92.70 -0.80 12.56 16 35 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16 38 H 0.05 2.01 5.63 -2.39 -0.01 2.00 16 39 H 0.03 1.24 7.89 -2.39 -0.02 1.23 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.12 3.03 8.06 -2.91 -0.02 3.00 16 42 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -67.87 343.87 3.90 -63.96 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.17 Total: 24.27 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.86 Total: -25.40 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.94 Total: -84.49 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.04 Total: -25.43 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.85 Total: 47.09 kcal Total: -67.87 3.90 -63.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183942386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.921 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds