Wall clock time and date at job start Mon Mar 30 2020 02:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 C 1.52999 * 109.47149 * 172.85723 * 3 2 1 5 5 C 1.53000 * 109.47074 * 186.06289 * 4 3 2 6 6 C 1.53007 * 109.46717 * 292.85722 * 3 2 1 7 7 H 1.08999 * 109.46636 * 185.91113 * 6 3 2 8 8 N 1.46497 * 109.47410 * 65.90989 * 6 3 2 9 9 C 1.34780 * 119.99999 * 76.94648 * 8 6 3 10 10 O 1.21681 * 120.00186 * 5.18076 * 9 8 6 11 11 C 1.46379 * 119.99854 * 185.17508 * 9 8 6 12 12 H 1.07999 * 119.99637 * 0.02562 * 11 9 8 13 13 C 1.40037 * 119.99945 * 179.97438 * 11 9 8 14 14 N 1.30679 * 120.00152 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 120.00267 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46734 * 60.00385 * 15 13 11 17 17 H 1.48495 * 109.47489 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47159 * 300.00711 * 15 13 11 19 19 C 1.50695 * 109.47065 * 305.90846 * 6 3 2 20 20 C 1.38228 * 120.00370 * 85.96012 * 19 6 3 21 21 C 1.38235 * 120.00575 * 179.78650 * 20 19 6 22 22 C 1.38237 * 119.99519 * 0.44245 * 21 20 19 23 23 C 1.38241 * 120.00235 * 359.81368 * 22 21 20 24 24 C 1.38236 * 119.99918 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47554 * 309.45798 * 1 2 3 26 26 H 1.09001 * 109.47097 * 69.45684 * 1 2 3 27 27 H 1.09005 * 109.46982 * 189.45534 * 1 2 3 28 28 H 1.08999 * 109.47154 * 239.99612 * 2 1 3 29 29 H 1.09001 * 109.46633 * 119.99584 * 2 1 3 30 30 H 1.08999 * 109.47026 * 52.85234 * 3 2 1 31 31 H 1.08999 * 109.47079 * 306.06357 * 4 3 2 32 32 H 1.08995 * 109.46924 * 66.06581 * 4 3 2 33 33 H 1.09001 * 109.47132 * 303.35252 * 5 4 3 34 34 H 1.09000 * 109.46993 * 63.34842 * 5 4 3 35 35 H 1.08997 * 109.47181 * 183.34459 * 5 4 3 36 36 H 0.97002 * 119.99910 * 256.95092 * 8 6 3 37 37 H 0.97003 * 119.99804 * 179.97438 * 14 13 11 38 38 H 1.07998 * 119.99824 * 0.02562 * 20 19 6 39 39 H 1.08000 * 120.00781 * 180.27598 * 21 20 19 40 40 H 1.08004 * 120.00541 * 179.83082 * 22 21 20 41 41 H 1.08000 * 120.00165 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.00268 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5595 1.4462 0.1794 5 6 4.0516 2.8869 0.3309 6 6 1.6817 2.1100 -1.3293 7 1 2.1346 3.1005 -1.3721 8 7 0.2259 2.2336 -1.4370 9 6 -0.4212 3.1968 -0.7514 10 8 0.2105 4.0218 -0.1182 11 6 -1.8839 3.2505 -0.7686 12 1 -2.4445 2.5180 -1.3304 13 6 -2.5563 4.2509 -0.0558 14 7 -1.8779 5.1369 0.6243 15 14 -4.4229 4.3199 -0.0783 16 1 -4.9716 3.0554 0.4741 17 1 -4.8860 5.4637 0.7478 18 1 -4.8949 4.4957 -1.4753 19 6 2.2002 1.2709 -2.4686 20 6 1.4389 0.2276 -2.9610 21 6 1.9126 -0.5394 -4.0090 22 6 3.1517 -0.2686 -4.5586 23 6 3.9155 0.7715 -4.0627 24 6 3.4399 1.5412 -3.0176 25 1 -0.3634 0.6531 0.7934 26 1 -0.3633 0.3606 -0.9623 27 1 -0.3633 -1.0138 0.1688 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5761 1.9919 0.8191 31 1 3.8214 0.8771 1.0713 32 1 4.0293 0.9916 -0.6927 33 1 3.7379 3.4709 -0.5344 34 1 3.6280 3.3223 1.2359 35 1 5.1394 2.8941 0.3991 36 1 -0.2723 1.6222 -2.0017 37 1 -2.3437 5.8301 1.1177 38 1 0.4722 0.0140 -2.5295 39 1 1.3158 -1.3517 -4.3967 40 1 3.5232 -0.8695 -5.3756 41 1 4.8839 0.9827 -4.4918 42 1 4.0367 2.3534 -2.6299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187355150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:12 Heat of formation + Delta-G solvation = -22.977689 kcal Electronic energy + Delta-G solvation = -22356.269534 eV Core-core repulsion = 19300.799378 eV Total energy + Delta-G solvation = -3055.470156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02015 -37.55819 -35.87346 -32.91864 -32.34288 -31.68229 -30.51873 -30.32730 -27.38173 -26.02851 -24.14118 -22.48234 -21.55223 -21.41942 -19.97550 -18.66073 -17.69848 -16.32090 -15.43307 -15.38258 -15.06614 -14.89039 -14.18252 -13.98720 -13.63803 -13.08711 -12.97182 -12.84303 -12.55089 -12.33079 -12.19011 -12.05585 -11.82265 -11.72702 -11.18687 -11.06136 -11.03101 -10.79563 -10.72013 -10.48362 -10.34841 -10.23951 -10.20538 -9.95853 -9.78056 -8.82131 -8.69861 -8.47172 -7.55450 -7.32115 -6.15814 -4.61099 1.55795 1.57545 3.16597 3.21850 3.23274 3.97046 4.12625 4.61111 4.82666 5.00487 5.08908 5.13679 5.22782 5.32753 5.43084 5.52967 5.67709 5.68330 5.76854 5.85692 5.89561 5.93756 6.09062 6.12946 6.16712 6.20591 6.34481 6.37649 6.48237 6.52331 6.56328 6.61480 6.64443 6.69030 6.78342 6.93677 6.99011 7.08120 7.20006 7.45306 7.94479 8.13908 8.35316 9.05277 9.55892 10.62865 10.82397 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.005790 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.959446 B = 4834.763883 C = 5331.537057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.093 4.093 4 C -0.118 4.118 5 C -0.151 4.151 6 C 0.198 3.802 7 H 0.081 0.919 8 N -0.758 5.758 9 C 0.559 3.441 10 O -0.577 6.577 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.090 3.910 14 N -0.768 5.768 15 Si 0.904 3.096 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.269 1.269 19 C -0.066 4.066 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.114 4.114 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.379 0.621 37 H 0.268 0.732 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.568 -10.534 -5.937 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.113 4.113 4 C -0.156 4.156 5 C -0.208 4.208 6 C 0.092 3.908 7 H 0.099 0.901 8 N -0.415 5.415 9 C 0.363 3.637 10 O -0.460 6.460 11 C -0.582 4.582 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.396 5.396 15 Si 0.729 3.271 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.194 1.194 19 C -0.066 4.066 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.132 4.132 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.214 0.786 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.015 -9.741 -5.329 14.302 hybrid contribution -1.182 -0.298 -0.280 1.251 sum 7.833 -10.039 -5.609 13.913 Atomic orbital electron populations 1.22065 0.95272 0.99722 1.03886 1.21625 0.96674 0.96315 1.00835 1.21576 0.94600 0.96168 0.98969 1.21579 0.95884 0.97021 1.01068 1.21800 0.99421 0.96895 1.02732 1.19496 0.84414 0.96899 0.89998 0.90080 1.46532 1.04263 1.37706 1.53028 1.18118 0.88347 0.78959 0.78291 1.90596 1.68646 1.40698 1.46043 1.20832 0.89969 1.14605 1.32805 0.91721 1.25659 0.99458 0.94356 0.93522 1.70009 1.36304 1.11161 1.22163 0.86502 0.83560 0.78270 0.78812 1.19338 1.20629 1.19370 1.20183 0.94364 0.95782 0.96318 1.21170 1.00292 0.95302 0.96509 1.21097 0.96220 0.99856 0.96801 1.21047 0.95201 0.98350 1.00408 1.21061 0.99710 0.96121 0.97142 1.21034 0.95830 0.99892 0.96459 0.92176 0.91183 0.94693 0.92128 0.93297 0.89649 0.92685 0.92185 0.92326 0.92477 0.93687 0.78575 0.92168 0.85571 0.86437 0.86693 0.86512 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.60 37.16 0.32 -2.26 16 2 C -0.12 -1.85 4.88 -26.73 -0.13 -1.98 16 3 C -0.09 -1.65 1.82 -90.62 -0.17 -1.82 16 4 C -0.12 -1.76 5.20 -26.73 -0.14 -1.90 16 5 C -0.15 -2.30 9.77 37.16 0.36 -1.93 16 6 C 0.20 3.72 1.85 -69.08 -0.13 3.59 16 7 H 0.08 1.72 5.83 -51.93 -0.30 1.42 16 8 N -0.76 -16.28 2.96 -56.34 -0.17 -16.44 16 9 C 0.56 15.23 7.42 -12.98 -0.10 15.14 16 10 O -0.58 -17.91 14.41 5.21 0.08 -17.84 16 11 C -0.55 -15.03 9.54 -35.63 -0.34 -15.37 16 12 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 13 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 14 N -0.77 -22.72 11.83 55.55 0.66 -22.07 16 15 Si 0.90 20.06 29.56 -169.99 -5.02 15.04 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 C -0.07 -1.03 3.91 -104.63 -0.41 -1.44 16 20 C -0.11 -1.65 6.77 -39.59 -0.27 -1.92 16 21 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 22 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 23 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 24 C -0.11 -1.59 8.12 -39.58 -0.32 -1.92 16 25 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.07 1.20 3.43 -51.93 -0.18 1.03 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.90 5.42 -51.93 -0.28 0.62 16 29 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 30 H 0.09 1.86 7.55 -51.93 -0.39 1.47 16 31 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.06 0.84 6.12 -51.93 -0.32 0.52 16 33 H 0.06 0.95 6.32 -51.93 -0.33 0.62 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.38 7.40 5.27 -40.82 -0.22 7.18 16 37 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 38 H 0.13 1.80 4.73 -52.49 -0.25 1.56 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.60 8.03 -52.49 -0.42 1.17 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -31.88 325.38 -8.19 -40.07 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.03 Total: 11.50 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.60 Total: -15.17 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.49 Total: -38.51 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.08 Total: -17.84 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.88 -8.19 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187355150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.094 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds