Wall clock time and date at job start Mon Mar 30 2020 02:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47182 * 2 1 4 4 C 1.52999 * 109.47149 * 172.85723 * 3 2 1 5 5 C 1.53000 * 109.47074 * 186.06289 * 4 3 2 6 6 C 1.53007 * 109.46717 * 292.85722 * 3 2 1 7 7 H 1.08999 * 109.46636 * 185.91113 * 6 3 2 8 8 N 1.46497 * 109.47410 * 65.90989 * 6 3 2 9 9 C 1.34780 * 119.99999 * 76.94648 * 8 6 3 10 10 O 1.21681 * 120.00186 * 5.18076 * 9 8 6 11 11 C 1.46379 * 119.99854 * 185.17508 * 9 8 6 12 12 H 1.07999 * 119.99637 * 0.02562 * 11 9 8 13 13 C 1.40037 * 119.99945 * 179.97438 * 11 9 8 14 14 N 1.30679 * 120.00152 * 0.02562 * 13 11 9 15 15 Si 1.86806 * 120.00267 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46734 * 60.00385 * 15 13 11 17 17 H 1.48495 * 109.47489 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47159 * 300.00711 * 15 13 11 19 19 C 1.50695 * 109.47065 * 305.90846 * 6 3 2 20 20 C 1.38228 * 120.00370 * 85.96012 * 19 6 3 21 21 C 1.38235 * 120.00575 * 179.78650 * 20 19 6 22 22 C 1.38237 * 119.99519 * 0.44245 * 21 20 19 23 23 C 1.38241 * 120.00235 * 359.81368 * 22 21 20 24 24 C 1.38236 * 119.99918 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47554 * 309.45798 * 1 2 3 26 26 H 1.09001 * 109.47097 * 69.45684 * 1 2 3 27 27 H 1.09005 * 109.46982 * 189.45534 * 1 2 3 28 28 H 1.08999 * 109.47154 * 239.99612 * 2 1 3 29 29 H 1.09001 * 109.46633 * 119.99584 * 2 1 3 30 30 H 1.08999 * 109.47026 * 52.85234 * 3 2 1 31 31 H 1.08999 * 109.47079 * 306.06357 * 4 3 2 32 32 H 1.08995 * 109.46924 * 66.06581 * 4 3 2 33 33 H 1.09001 * 109.47132 * 303.35252 * 5 4 3 34 34 H 1.09000 * 109.46993 * 63.34842 * 5 4 3 35 35 H 1.08997 * 109.47181 * 183.34459 * 5 4 3 36 36 H 0.97002 * 119.99910 * 256.95092 * 8 6 3 37 37 H 0.97003 * 119.99804 * 179.97438 * 14 13 11 38 38 H 1.07998 * 119.99824 * 0.02562 * 20 19 6 39 39 H 1.08000 * 120.00781 * 180.27598 * 21 20 19 40 40 H 1.08004 * 120.00541 * 179.83082 * 22 21 20 41 41 H 1.08000 * 120.00165 * 179.97438 * 23 22 21 42 42 H 1.07994 * 120.00268 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5595 1.4462 0.1794 5 6 4.0516 2.8869 0.3309 6 6 1.6817 2.1100 -1.3293 7 1 2.1346 3.1005 -1.3721 8 7 0.2259 2.2336 -1.4370 9 6 -0.4212 3.1968 -0.7514 10 8 0.2105 4.0218 -0.1182 11 6 -1.8839 3.2505 -0.7686 12 1 -2.4445 2.5180 -1.3304 13 6 -2.5563 4.2509 -0.0558 14 7 -1.8779 5.1369 0.6243 15 14 -4.4229 4.3199 -0.0783 16 1 -4.9716 3.0554 0.4741 17 1 -4.8860 5.4637 0.7478 18 1 -4.8949 4.4957 -1.4753 19 6 2.2002 1.2709 -2.4686 20 6 1.4389 0.2276 -2.9610 21 6 1.9126 -0.5394 -4.0090 22 6 3.1517 -0.2686 -4.5586 23 6 3.9155 0.7715 -4.0627 24 6 3.4399 1.5412 -3.0176 25 1 -0.3634 0.6531 0.7934 26 1 -0.3633 0.3606 -0.9623 27 1 -0.3633 -1.0138 0.1688 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5761 1.9919 0.8191 31 1 3.8214 0.8771 1.0713 32 1 4.0293 0.9916 -0.6927 33 1 3.7379 3.4709 -0.5344 34 1 3.6280 3.3223 1.2359 35 1 5.1394 2.8941 0.3991 36 1 -0.2723 1.6222 -2.0017 37 1 -2.3437 5.8301 1.1177 38 1 0.4722 0.0140 -2.5295 39 1 1.3158 -1.3517 -4.3967 40 1 3.5232 -0.8695 -5.3756 41 1 4.8839 0.9827 -4.4918 42 1 4.0367 2.3534 -2.6299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187355150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:11 Heat of formation + Delta-G solvation = -41.464788 kcal Electronic energy + Delta-G solvation = -22357.071195 eV Core-core repulsion = 19300.799378 eV Total energy + Delta-G solvation = -3056.271817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34956 -39.10548 -37.55165 -34.74330 -34.24317 -33.03095 -31.78674 -31.50906 -28.98220 -27.85304 -25.61538 -23.57606 -22.80616 -22.67618 -21.77997 -20.13789 -19.48576 -17.77760 -17.34694 -16.68344 -16.54259 -16.14380 -15.67468 -15.35135 -14.89992 -14.70806 -14.46865 -14.12641 -14.06950 -13.88828 -13.65293 -13.35264 -13.18447 -13.10747 -12.92925 -12.77121 -12.57285 -12.40061 -12.09196 -11.98697 -11.86408 -11.74718 -11.62077 -11.32639 -11.16980 -10.88895 -9.80810 -9.71275 -9.54149 -9.16342 -8.25080 -6.80565 0.50907 0.56777 1.38723 1.42116 1.52944 2.24859 2.52324 2.92712 3.18680 3.67207 3.72345 4.01017 4.01829 4.08857 4.19186 4.22303 4.36583 4.38029 4.54501 4.61830 4.65043 4.70132 4.73944 4.85895 4.88911 5.06329 5.09976 5.15227 5.17546 5.21871 5.24255 5.28017 5.33794 5.43921 5.52785 5.58832 5.67118 5.70229 5.76855 5.93079 6.18382 6.27713 6.38531 6.90780 7.60137 8.55583 8.73499 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.005790 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.959446 B = 4834.763883 C = 5331.537057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.089 4.089 4 C -0.109 4.109 5 C -0.148 4.148 6 C 0.202 3.798 7 H 0.045 0.955 8 N -0.744 5.744 9 C 0.548 3.452 10 O -0.626 6.626 11 C -0.573 4.573 12 H 0.082 0.918 13 C 0.032 3.968 14 N -0.821 5.821 15 Si 0.990 3.010 16 H -0.255 1.255 17 H -0.276 1.276 18 H -0.255 1.255 19 C -0.085 4.085 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.125 4.125 25 H 0.018 0.982 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.390 0.610 37 H 0.272 0.728 38 H 0.121 0.879 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.827 -13.361 -8.146 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.109 4.109 4 C -0.147 4.147 5 C -0.206 4.206 6 C 0.096 3.904 7 H 0.063 0.937 8 N -0.400 5.400 9 C 0.351 3.649 10 O -0.513 6.513 11 C -0.609 4.609 12 H 0.100 0.900 13 C -0.183 4.183 14 N -0.451 5.451 15 Si 0.810 3.190 16 H -0.179 1.179 17 H -0.201 1.201 18 H -0.180 1.180 19 C -0.085 4.085 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.143 4.143 25 H 0.037 0.963 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.227 0.773 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.292 -12.619 -7.573 17.405 hybrid contribution -1.167 0.541 0.327 1.327 sum 8.126 -12.079 -7.247 16.261 Atomic orbital electron populations 1.21991 0.96299 1.00233 1.01948 1.21578 0.95659 0.94974 1.02368 1.21452 0.96450 0.96669 0.96370 1.21531 0.93624 0.96984 1.02542 1.21768 1.01265 0.96866 1.00659 1.19453 0.82200 0.96203 0.92499 0.93656 1.46190 1.05809 1.36252 1.51708 1.18400 0.88912 0.79341 0.78212 1.90551 1.69661 1.42887 1.48202 1.21358 0.90616 1.15496 1.33468 0.89986 1.26866 1.05727 0.93352 0.92359 1.70191 1.39179 1.12284 1.23459 0.85180 0.75538 0.78787 0.79469 1.17947 1.20053 1.17952 1.19869 0.95749 0.96589 0.96307 1.21184 1.00098 0.95564 0.97631 1.21407 0.96819 0.99840 0.95639 1.21481 0.94452 0.97817 1.00427 1.21388 1.00845 0.95462 0.95939 1.21123 0.95317 1.00505 0.97360 0.96287 0.91708 0.91999 0.90092 0.91933 0.95129 0.91174 0.90242 0.94089 0.94995 0.90516 0.77299 0.91833 0.86080 0.83801 0.83362 0.83736 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 8.60 71.98 0.62 -4.45 16 2 C -0.11 -3.41 4.88 30.59 0.15 -3.26 16 3 C -0.09 -3.33 1.82 -10.79 -0.02 -3.35 16 4 C -0.11 -3.28 5.20 30.59 0.16 -3.12 16 5 C -0.15 -4.71 9.77 71.98 0.70 -4.01 16 6 C 0.20 7.98 1.85 44.25 0.08 8.06 16 7 H 0.05 2.10 5.83 -2.39 -0.01 2.09 16 8 N -0.74 -33.64 2.96 -450.40 -1.33 -34.98 16 9 C 0.55 31.73 7.42 86.36 0.64 32.37 16 10 O -0.63 -41.95 14.41 -4.29 -0.06 -42.01 16 11 C -0.57 -32.71 9.54 24.83 0.24 -32.47 16 12 H 0.08 4.23 7.85 -2.91 -0.02 4.20 16 13 C 0.03 1.80 5.50 85.30 0.47 2.27 16 14 N -0.82 -51.02 11.83 21.83 0.26 -50.76 16 15 Si 0.99 41.74 29.56 68.60 2.03 43.77 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 17 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 19 C -0.08 -2.61 3.91 -19.87 -0.08 -2.69 16 20 C -0.13 -3.41 6.77 22.27 0.15 -3.26 16 21 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 22 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 23 C -0.12 -2.45 10.05 22.27 0.22 -2.22 16 24 C -0.12 -3.31 8.12 22.27 0.18 -3.13 16 25 H 0.02 0.77 8.07 -2.39 -0.02 0.75 16 26 H 0.06 2.26 3.43 -2.39 -0.01 2.25 16 27 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.08 2.26 5.42 -2.39 -0.01 2.24 16 29 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.03 1.46 7.55 -2.39 -0.02 1.44 16 31 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 32 H 0.08 2.11 6.12 -2.39 -0.01 2.09 16 33 H 0.04 1.42 6.32 -2.39 -0.02 1.41 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.39 15.71 5.27 -92.71 -0.49 15.23 16 37 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 38 H 0.12 3.31 4.73 -2.91 -0.01 3.30 16 39 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.12 3.11 8.03 -2.91 -0.02 3.09 16 Total: -1.00 -75.08 325.38 5.39 -69.69 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: 0.53 Total: 37.90 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 3.97 Total: -23.61 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -1.08 Total: -85.74 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.06 Total: -42.01 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -75.08 5.39 -69.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187355150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.227 kcal (2) G-P(sol) polarization free energy of solvation -75.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds