Wall clock time and date at job start Mon Mar 30 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47212 * 2 1 4 4 C 1.53004 * 109.47150 * 174.65238 * 3 2 1 5 5 C 1.53007 * 109.46752 * 187.53629 * 4 3 2 6 6 C 1.53004 * 109.47187 * 294.64713 * 3 2 1 7 7 H 1.09002 * 109.46747 * 54.23009 * 6 3 2 8 8 N 1.46503 * 109.47230 * 174.22772 * 6 3 2 9 9 C 1.34775 * 120.00108 * 285.61428 * 8 6 3 10 10 O 1.21691 * 119.99972 * 4.97307 * 9 8 6 11 11 C 1.46377 * 120.00026 * 184.96527 * 9 8 6 12 12 H 1.08000 * 119.99746 * 0.02562 * 11 9 8 13 13 C 1.40046 * 119.99970 * 180.02562 * 11 9 8 14 14 N 1.30675 * 120.00168 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00040 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46888 * 90.00122 * 15 13 11 17 17 H 1.48500 * 109.47099 * 210.00208 * 15 13 11 18 18 H 1.48501 * 109.47140 * 330.00495 * 15 13 11 19 19 C 1.50697 * 109.47710 * 294.23210 * 6 3 2 20 20 C 1.38230 * 120.00158 * 271.65083 * 19 6 3 21 21 C 1.38229 * 120.00276 * 179.78047 * 20 19 6 22 22 C 1.38236 * 120.00129 * 0.44619 * 21 20 19 23 23 C 1.38237 * 119.99477 * 359.80258 * 22 21 20 24 24 C 1.38235 * 120.00353 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.46972 * 176.97038 * 1 2 3 26 26 H 1.08992 * 109.47148 * 296.96814 * 1 2 3 27 27 H 1.08996 * 109.46912 * 56.97012 * 1 2 3 28 28 H 1.09001 * 109.47357 * 120.00317 * 2 1 3 29 29 H 1.09003 * 109.46958 * 239.99624 * 2 1 3 30 30 H 1.08998 * 109.47737 * 54.64764 * 3 2 1 31 31 H 1.08998 * 109.47141 * 307.53617 * 4 3 2 32 32 H 1.08994 * 109.47031 * 67.53914 * 4 3 2 33 33 H 1.09000 * 109.47295 * 290.03609 * 5 4 3 34 34 H 1.08998 * 109.47299 * 50.04163 * 5 4 3 35 35 H 1.09004 * 109.46703 * 170.04113 * 5 4 3 36 36 H 0.96998 * 119.99831 * 105.62185 * 8 6 3 37 37 H 0.96996 * 120.00016 * 179.97438 * 14 13 11 38 38 H 1.08005 * 119.99556 * 359.97438 * 20 19 6 39 39 H 1.08007 * 120.00360 * 180.26813 * 21 20 19 40 40 H 1.08000 * 120.00157 * 179.83155 * 22 21 20 41 41 H 1.08003 * 119.99653 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.99945 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5641 1.4445 0.1344 5 6 4.0574 2.8805 0.3232 6 6 1.6429 2.1238 -1.3111 7 1 0.5665 2.0321 -1.4567 8 7 2.0091 3.5412 -1.2553 9 6 1.2830 4.3959 -0.5077 10 8 0.3798 3.9764 0.1916 11 6 1.5812 5.8287 -0.5368 12 1 2.3826 6.2010 -1.1576 13 6 0.8271 6.7167 0.2405 14 7 -0.1423 6.2662 0.9920 15 14 1.2071 8.5453 0.2028 16 1 0.4088 9.1948 -0.8678 17 1 0.8610 9.1498 1.5143 18 1 2.6535 8.7448 -0.0681 19 6 2.3629 1.4637 -2.4586 20 6 3.6153 1.9099 -2.8371 21 6 4.2777 1.3015 -3.8868 22 6 3.6839 0.2529 -4.5640 23 6 2.4293 -0.1899 -4.1888 24 6 1.7687 0.4154 -3.1361 25 1 -0.3633 -1.0262 -0.0543 26 1 -0.3633 0.4660 0.9158 27 1 -0.3633 0.5601 -0.8616 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6006 1.9833 0.8381 31 1 3.8536 0.8445 0.9972 32 1 4.0089 1.0231 -0.7670 33 1 3.9270 3.4346 -0.6063 34 1 3.4837 3.3605 1.1160 35 1 5.1131 2.8693 0.5944 36 1 2.7740 3.8646 -1.7565 37 1 -0.6643 6.8812 1.5306 38 1 4.0775 2.7319 -2.3106 39 1 5.2581 1.6473 -4.1797 40 1 4.2003 -0.2207 -5.3858 41 1 1.9655 -1.0095 -4.7176 42 1 0.7887 0.0692 -2.8428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187355173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:16 Heat of formation + Delta-G solvation = -23.420147 kcal Electronic energy + Delta-G solvation = -22364.740088 eV Core-core repulsion = 19309.250745 eV Total energy + Delta-G solvation = -3055.489342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.01478 -37.56970 -35.83609 -32.92271 -32.32797 -31.68738 -30.52679 -30.30977 -27.36670 -26.02346 -24.14445 -22.48549 -21.54065 -21.40757 -19.96173 -18.66222 -17.67305 -16.32774 -15.43942 -15.36692 -15.05412 -14.90783 -14.18469 -13.97901 -13.63210 -13.05784 -12.96753 -12.81233 -12.56465 -12.40347 -12.14485 -12.01923 -11.84470 -11.70516 -11.18601 -11.04541 -11.03808 -10.80703 -10.70829 -10.47315 -10.33668 -10.24111 -10.18804 -9.94113 -9.76264 -8.82819 -8.70395 -8.47161 -7.53788 -7.31733 -6.15976 -4.61084 1.55617 1.57347 3.14842 3.22087 3.24888 3.96927 4.12529 4.61722 4.82188 5.00943 5.08612 5.13667 5.23357 5.33949 5.44105 5.54478 5.67855 5.68587 5.76696 5.86463 5.91016 5.94914 6.09285 6.13726 6.16562 6.21986 6.35129 6.38383 6.49834 6.53902 6.57760 6.61798 6.64845 6.69978 6.80135 6.94497 7.00875 7.12052 7.20325 7.45374 7.94101 8.13956 8.35496 9.05345 9.55983 10.62670 10.82346 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.005815 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.333830 B = 4813.970717 C = 5353.107069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.095 4.095 4 C -0.116 4.116 5 C -0.151 4.151 6 C 0.201 3.799 7 H 0.077 0.923 8 N -0.758 5.758 9 C 0.559 3.441 10 O -0.576 6.576 11 C -0.545 4.545 12 H 0.065 0.935 13 C 0.090 3.910 14 N -0.767 5.767 15 Si 0.903 3.097 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 C -0.066 4.066 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.114 4.114 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.379 0.621 37 H 0.267 0.733 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.207 -10.844 -6.912 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.115 4.115 4 C -0.153 4.153 5 C -0.208 4.208 6 C 0.094 3.906 7 H 0.095 0.905 8 N -0.416 5.416 9 C 0.363 3.637 10 O -0.458 6.458 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.396 5.396 15 Si 0.728 3.272 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.066 4.066 20 C -0.132 4.132 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.133 4.133 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.214 0.786 37 H 0.078 0.922 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.364 -11.089 -6.268 14.239 hybrid contribution 0.577 1.065 -0.278 1.243 sum 6.941 -10.024 -6.546 13.839 Atomic orbital electron populations 1.21798 0.95956 1.00266 1.02795 1.21589 0.95952 0.96867 1.01188 1.21598 0.95285 0.95086 0.99486 1.21596 0.95663 0.97415 1.00621 1.22038 0.98680 0.96638 1.03470 1.19500 0.97854 0.82993 0.90208 0.90487 1.46520 1.34790 1.05843 1.54405 1.18112 0.80976 0.86118 0.78518 1.90595 1.33262 1.78760 1.43218 1.20874 1.18732 0.90394 1.28254 0.91697 1.25658 0.93732 0.99964 0.93636 1.70014 1.14785 1.35329 1.19493 0.86443 0.79515 0.83221 0.77989 1.19830 1.20531 1.18974 1.20180 0.94670 0.95661 0.96122 1.21139 0.94870 1.00162 0.97059 1.21096 0.99823 0.96710 0.96291 1.21045 0.95848 0.97890 1.00241 1.21059 0.95369 1.00091 0.97497 1.21026 1.00035 0.96441 0.95760 0.93728 0.92385 0.92448 0.92708 0.92249 0.89018 0.93351 0.92287 0.91265 0.92260 0.94761 0.78615 0.92229 0.85634 0.86434 0.86689 0.86514 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.75 37.16 0.36 -1.93 16 2 C -0.12 -1.78 5.17 -26.74 -0.14 -1.92 16 3 C -0.09 -1.70 1.78 -90.62 -0.16 -1.86 16 4 C -0.12 -1.86 4.91 -26.73 -0.13 -1.99 16 5 C -0.15 -2.62 8.61 37.16 0.32 -2.30 16 6 C 0.20 3.76 1.83 -69.08 -0.13 3.63 16 7 H 0.08 1.62 6.04 -51.93 -0.31 1.31 16 8 N -0.76 -16.25 2.92 -56.34 -0.16 -16.41 16 9 C 0.56 15.17 7.38 -12.99 -0.10 15.08 16 10 O -0.58 -17.70 13.90 5.20 0.07 -17.63 16 11 C -0.55 -15.05 9.54 -35.63 -0.34 -15.39 16 12 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 13 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 14 N -0.77 -22.67 11.83 55.55 0.66 -22.01 16 15 Si 0.90 20.07 29.56 -169.99 -5.02 15.04 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 C -0.07 -1.03 3.89 -104.63 -0.41 -1.44 16 20 C -0.11 -1.64 6.90 -39.59 -0.27 -1.92 16 21 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 22 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 23 C -0.12 -1.48 10.05 -39.58 -0.40 -1.87 16 24 C -0.11 -1.59 8.00 -39.58 -0.32 -1.91 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.92 6.12 -51.93 -0.32 0.60 16 28 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 29 H 0.06 0.83 6.05 -51.93 -0.31 0.52 16 30 H 0.09 2.04 6.96 -51.93 -0.36 1.68 16 31 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.06 0.89 5.51 -51.93 -0.29 0.61 16 33 H 0.07 1.21 3.58 -51.93 -0.19 1.03 16 34 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.38 7.39 5.30 -40.82 -0.22 7.17 16 37 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 38 H 0.13 1.81 4.83 -52.48 -0.25 1.55 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.12 1.58 7.84 -52.49 -0.41 1.17 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -31.71 324.23 -8.18 -39.89 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.01 Total: 11.53 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -2.60 Total: -15.29 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.49 Total: -38.43 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.07 Total: -17.63 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.71 -8.18 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187355173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.466 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds