Wall clock time and date at job start Mon Mar 30 2020 02:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47212 * 2 1 4 4 C 1.53004 * 109.47150 * 174.65238 * 3 2 1 5 5 C 1.53007 * 109.46752 * 187.53629 * 4 3 2 6 6 C 1.53004 * 109.47187 * 294.64713 * 3 2 1 7 7 H 1.09002 * 109.46747 * 54.23009 * 6 3 2 8 8 N 1.46503 * 109.47230 * 174.22772 * 6 3 2 9 9 C 1.34775 * 120.00108 * 285.61428 * 8 6 3 10 10 O 1.21691 * 119.99972 * 4.97307 * 9 8 6 11 11 C 1.46377 * 120.00026 * 184.96527 * 9 8 6 12 12 H 1.08000 * 119.99746 * 0.02562 * 11 9 8 13 13 C 1.40046 * 119.99970 * 180.02562 * 11 9 8 14 14 N 1.30675 * 120.00168 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00040 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46888 * 90.00122 * 15 13 11 17 17 H 1.48500 * 109.47099 * 210.00208 * 15 13 11 18 18 H 1.48501 * 109.47140 * 330.00495 * 15 13 11 19 19 C 1.50697 * 109.47710 * 294.23210 * 6 3 2 20 20 C 1.38230 * 120.00158 * 271.65083 * 19 6 3 21 21 C 1.38229 * 120.00276 * 179.78047 * 20 19 6 22 22 C 1.38236 * 120.00129 * 0.44619 * 21 20 19 23 23 C 1.38237 * 119.99477 * 359.80258 * 22 21 20 24 24 C 1.38235 * 120.00353 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.46972 * 176.97038 * 1 2 3 26 26 H 1.08992 * 109.47148 * 296.96814 * 1 2 3 27 27 H 1.08996 * 109.46912 * 56.97012 * 1 2 3 28 28 H 1.09001 * 109.47357 * 120.00317 * 2 1 3 29 29 H 1.09003 * 109.46958 * 239.99624 * 2 1 3 30 30 H 1.08998 * 109.47737 * 54.64764 * 3 2 1 31 31 H 1.08998 * 109.47141 * 307.53617 * 4 3 2 32 32 H 1.08994 * 109.47031 * 67.53914 * 4 3 2 33 33 H 1.09000 * 109.47295 * 290.03609 * 5 4 3 34 34 H 1.08998 * 109.47299 * 50.04163 * 5 4 3 35 35 H 1.09004 * 109.46703 * 170.04113 * 5 4 3 36 36 H 0.96998 * 119.99831 * 105.62185 * 8 6 3 37 37 H 0.96996 * 120.00016 * 179.97438 * 14 13 11 38 38 H 1.08005 * 119.99556 * 359.97438 * 20 19 6 39 39 H 1.08007 * 120.00360 * 180.26813 * 21 20 19 40 40 H 1.08000 * 120.00157 * 179.83155 * 22 21 20 41 41 H 1.08003 * 119.99653 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.99945 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5641 1.4445 0.1344 5 6 4.0574 2.8805 0.3232 6 6 1.6429 2.1238 -1.3111 7 1 0.5665 2.0321 -1.4567 8 7 2.0091 3.5412 -1.2553 9 6 1.2830 4.3959 -0.5077 10 8 0.3798 3.9764 0.1916 11 6 1.5812 5.8287 -0.5368 12 1 2.3826 6.2010 -1.1576 13 6 0.8271 6.7167 0.2405 14 7 -0.1423 6.2662 0.9920 15 14 1.2071 8.5453 0.2028 16 1 0.4088 9.1948 -0.8678 17 1 0.8610 9.1498 1.5143 18 1 2.6535 8.7448 -0.0681 19 6 2.3629 1.4637 -2.4586 20 6 3.6153 1.9099 -2.8371 21 6 4.2777 1.3015 -3.8868 22 6 3.6839 0.2529 -4.5640 23 6 2.4293 -0.1899 -4.1888 24 6 1.7687 0.4154 -3.1361 25 1 -0.3633 -1.0262 -0.0543 26 1 -0.3633 0.4660 0.9158 27 1 -0.3633 0.5601 -0.8616 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6006 1.9833 0.8381 31 1 3.8536 0.8445 0.9972 32 1 4.0089 1.0231 -0.7670 33 1 3.9270 3.4346 -0.6063 34 1 3.4837 3.3605 1.1160 35 1 5.1131 2.8693 0.5944 36 1 2.7740 3.8646 -1.7565 37 1 -0.6643 6.8812 1.5306 38 1 4.0775 2.7319 -2.3106 39 1 5.2581 1.6473 -4.1797 40 1 4.2003 -0.2207 -5.3858 41 1 1.9655 -1.0095 -4.7176 42 1 0.7887 0.0692 -2.8428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187355173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:15 Heat of formation + Delta-G solvation = -41.727525 kcal Electronic energy + Delta-G solvation = -22365.533955 eV Core-core repulsion = 19309.250745 eV Total energy + Delta-G solvation = -3056.283210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34571 -39.10834 -37.51397 -34.74150 -34.24022 -33.04076 -31.76789 -31.51097 -28.97354 -27.84791 -25.61975 -23.57942 -22.79979 -22.67697 -21.76424 -20.14112 -19.45911 -17.79332 -17.32680 -16.67956 -16.55610 -16.12944 -15.67710 -15.34858 -14.90612 -14.67020 -14.40093 -14.23673 -14.06363 -13.85552 -13.65080 -13.35584 -13.19008 -13.09745 -12.92555 -12.79410 -12.56473 -12.41229 -12.07384 -11.95201 -11.86232 -11.75892 -11.62980 -11.32104 -11.16942 -10.89729 -9.77593 -9.71266 -9.54494 -9.14795 -8.24923 -6.80390 0.51153 0.57007 1.38751 1.40130 1.54542 2.24811 2.52795 2.93257 3.18716 3.67666 3.73215 4.01157 4.02000 4.09224 4.19830 4.22431 4.36862 4.37915 4.54283 4.61372 4.65036 4.70496 4.74232 4.85405 4.90471 5.05937 5.10211 5.15372 5.17957 5.21694 5.25185 5.28519 5.34033 5.44273 5.52835 5.59838 5.68158 5.70549 5.76592 5.93142 6.18468 6.27669 6.39066 6.91049 7.60709 8.55975 8.74057 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.005815 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.333830 B = 4813.970717 C = 5353.107069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.091 4.091 4 C -0.107 4.107 5 C -0.146 4.146 6 C 0.204 3.796 7 H 0.044 0.956 8 N -0.744 5.744 9 C 0.548 3.452 10 O -0.623 6.623 11 C -0.574 4.574 12 H 0.081 0.919 13 C 0.032 3.968 14 N -0.821 5.821 15 Si 0.990 3.010 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.250 1.250 19 C -0.084 4.084 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.124 4.124 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.015 0.985 35 H 0.060 0.940 36 H 0.389 0.611 37 H 0.272 0.728 38 H 0.119 0.881 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.686 -11.832 -9.299 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.111 4.111 4 C -0.144 4.144 5 C -0.203 4.203 6 C 0.099 3.901 7 H 0.062 0.938 8 N -0.400 5.400 9 C 0.351 3.649 10 O -0.509 6.509 11 C -0.611 4.611 12 H 0.099 0.901 13 C -0.183 4.183 14 N -0.451 5.451 15 Si 0.810 3.190 16 H -0.188 1.188 17 H -0.199 1.199 18 H -0.173 1.173 19 C -0.085 4.085 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.143 4.143 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.137 0.863 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.883 -12.107 -8.692 17.350 hybrid contribution -0.177 1.277 0.381 1.345 sum 8.706 -10.829 -8.311 16.190 Atomic orbital electron populations 1.21764 0.96385 1.01625 1.00728 1.21539 0.95544 0.94956 1.02693 1.21458 0.96545 0.96208 0.96898 1.21548 0.94040 0.96774 1.02071 1.21961 0.99590 0.97135 1.01611 1.19452 0.96540 0.81565 0.92547 0.93844 1.46177 1.34049 1.06867 1.52906 1.18375 0.80829 0.87096 0.78550 1.90554 1.35406 1.79692 1.45245 1.21398 1.19547 0.91143 1.29010 0.90086 1.26853 0.92975 1.05918 0.92519 1.70188 1.16368 1.37753 1.20762 0.85129 0.80057 0.75487 0.78307 1.18801 1.19930 1.17318 1.19862 0.95502 0.97072 0.96028 1.21147 0.94587 1.00533 0.98229 1.21398 1.00700 0.96444 0.95136 1.21478 0.95459 0.96958 1.00296 1.21391 0.95508 1.00263 0.96425 1.21120 1.00326 0.96315 0.96499 0.90529 0.95051 0.93952 0.91374 0.90213 0.94597 0.92079 0.90212 0.91729 0.96596 0.92121 0.77373 0.91842 0.86277 0.83868 0.83371 0.83690 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.75 71.98 0.70 -3.97 16 2 C -0.11 -3.32 5.17 30.59 0.16 -3.16 16 3 C -0.09 -3.43 1.78 -10.79 -0.02 -3.45 16 4 C -0.11 -3.44 4.91 30.60 0.15 -3.29 16 5 C -0.15 -5.16 8.61 71.98 0.62 -4.54 16 6 C 0.20 8.05 1.83 44.25 0.08 8.13 16 7 H 0.04 1.99 6.04 -2.39 -0.01 1.97 16 8 N -0.74 -33.57 2.92 -450.38 -1.32 -34.89 16 9 C 0.55 31.62 7.38 86.36 0.64 32.26 16 10 O -0.62 -41.33 13.90 -4.32 -0.06 -41.39 16 11 C -0.57 -32.83 9.54 24.83 0.24 -32.59 16 12 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 13 C 0.03 1.82 5.50 85.30 0.47 2.29 16 14 N -0.82 -50.88 11.83 21.84 0.26 -50.62 16 15 Si 0.99 41.78 29.56 68.60 2.03 43.81 16 16 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 19 C -0.08 -2.58 3.89 -19.87 -0.08 -2.66 16 20 C -0.13 -3.42 6.90 22.27 0.15 -3.27 16 21 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 22 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 23 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 24 C -0.12 -3.25 8.00 22.27 0.18 -3.07 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 1.45 6.12 -2.39 -0.01 1.43 16 28 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 29 H 0.08 2.12 6.05 -2.39 -0.01 2.10 16 30 H 0.04 1.75 6.96 -2.39 -0.02 1.73 16 31 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 32 H 0.08 2.27 5.51 -2.39 -0.01 2.26 16 33 H 0.06 2.31 3.58 -2.39 -0.01 2.30 16 34 H 0.01 0.66 8.06 -2.39 -0.02 0.64 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.39 15.69 5.30 -92.71 -0.49 15.20 16 37 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 38 H 0.12 3.30 4.83 -2.91 -0.01 3.28 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.12 3.08 7.84 -2.91 -0.02 3.06 16 Total: -1.00 -74.63 324.23 5.40 -69.23 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: 0.53 Total: 37.72 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 3.96 Total: -23.86 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -1.06 Total: -85.51 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -0.06 Total: -41.39 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -74.63 5.40 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187355173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.502 kcal (2) G-P(sol) polarization free energy of solvation -74.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds