Wall clock time and date at job start Mon Mar 30 2020 02:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47001 * 2 1 4 4 C 1.53000 * 109.46954 * 184.92462 * 3 2 1 5 5 C 1.53003 * 109.46676 * 182.13191 * 4 3 2 6 6 C 1.53000 * 109.47025 * 64.92360 * 3 2 1 7 7 N 1.46495 * 109.47085 * 60.00411 * 6 3 2 8 8 C 1.34781 * 119.99964 * 179.97438 * 7 6 3 9 9 O 1.21682 * 119.99992 * 359.97438 * 8 7 6 10 10 C 1.46379 * 119.99921 * 179.97438 * 8 7 6 11 11 H 1.07998 * 120.00046 * 354.34369 * 10 8 7 12 12 C 1.40052 * 119.99933 * 174.34171 * 10 8 7 13 13 N 1.30669 * 119.99919 * 5.71264 * 12 10 8 14 14 Si 1.86796 * 119.99842 * 185.70845 * 12 10 8 15 15 H 1.48508 * 109.46891 * 94.99401 * 14 12 10 16 16 H 1.48497 * 109.47225 * 214.98895 * 14 12 10 17 17 H 1.48493 * 109.47545 * 334.99611 * 14 12 10 18 18 C 1.50698 * 109.47146 * 304.92608 * 3 2 1 19 19 C 1.38234 * 119.99885 * 296.10077 * 18 3 2 20 20 C 1.38238 * 120.00023 * 179.97438 * 19 18 3 21 21 C 1.38226 * 119.99992 * 0.09438 * 20 19 18 22 22 C 1.38231 * 120.00256 * 359.86136 * 21 20 19 23 23 C 1.38236 * 120.00295 * 116.07355 * 18 3 2 24 24 H 1.09000 * 109.47247 * 184.22446 * 1 2 3 25 25 H 1.09004 * 109.47283 * 304.22068 * 1 2 3 26 26 H 1.09002 * 109.46882 * 64.22193 * 1 2 3 27 27 H 1.08994 * 109.47415 * 240.00193 * 2 1 3 28 28 H 1.09000 * 109.46775 * 119.99625 * 2 1 3 29 29 H 1.08992 * 109.47112 * 302.13248 * 4 3 2 30 30 H 1.09002 * 109.46929 * 62.13887 * 4 3 2 31 31 H 1.09000 * 109.46782 * 186.74222 * 5 4 3 32 32 H 1.08998 * 109.47380 * 306.74101 * 5 4 3 33 33 H 1.09000 * 109.46955 * 66.74815 * 5 4 3 34 34 H 1.09000 * 109.46726 * 179.97438 * 6 3 2 35 35 H 1.08998 * 109.47775 * 299.99865 * 6 3 2 36 36 H 0.97002 * 120.00407 * 359.97438 * 7 6 3 37 37 H 0.97001 * 119.99752 * 179.97438 * 13 12 10 38 38 H 1.08008 * 119.99935 * 359.70156 * 19 18 3 39 39 H 1.08001 * 119.99864 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.00460 * 179.97438 * 21 20 19 41 41 H 1.07997 * 120.00594 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.99455 * 0.02562 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5650 1.4443 -0.1238 5 6 4.0792 2.8844 -0.0704 6 6 1.6336 2.1272 1.3065 7 7 2.2164 1.4033 2.4390 8 6 1.9918 1.8284 3.6981 9 8 1.3054 2.8139 3.8942 10 6 2.5737 1.1048 4.8296 11 1 3.1059 0.1799 4.6630 12 6 2.4404 1.6118 6.1283 13 7 1.7034 2.6689 6.3445 14 14 3.3160 0.7767 7.5514 15 1 4.6135 1.4548 7.8007 16 1 2.4715 0.8607 8.7701 17 1 3.5592 -0.6490 7.2150 18 6 1.4405 2.1873 -1.1649 19 6 1.7363 1.8004 -2.4586 20 6 1.1860 2.4832 -3.5272 21 6 0.3415 3.5541 -3.3021 22 6 0.0449 3.9404 -2.0084 23 6 0.5943 3.2570 -0.9398 24 1 -0.3634 -1.0249 0.0757 25 1 -0.3634 0.5780 0.8498 26 1 -0.3633 0.4469 -0.9254 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9969 0.8735 0.6981 30 1 3.8530 0.9907 -1.0722 31 1 5.1492 2.8959 -0.2779 32 1 3.5580 3.4843 -0.8163 33 1 3.8970 3.2987 0.9212 34 1 1.9973 3.1547 1.3067 35 1 0.5472 2.1260 1.3948 36 1 2.7639 0.6179 2.2827 37 1 1.6107 3.0199 7.2440 38 1 2.4009 0.9674 -2.6345 39 1 1.4175 2.1812 -4.5379 40 1 -0.0882 4.0879 -4.1369 41 1 -0.6153 4.7768 -1.8325 42 1 0.3632 3.5592 0.0710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187442785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:08 Heat of formation + Delta-G solvation = -33.103247 kcal Electronic energy + Delta-G solvation = -21886.199153 eV Core-core repulsion = 18830.289919 eV Total energy + Delta-G solvation = -3055.909233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22681 -37.64685 -36.20105 -32.68646 -31.97399 -31.87158 -30.89775 -30.12199 -27.41142 -26.06216 -24.85560 -22.50787 -21.95970 -21.73187 -19.80386 -18.44460 -17.48197 -16.58874 -15.37059 -15.26858 -15.02336 -14.72169 -14.27249 -14.17075 -13.97247 -13.71620 -13.15247 -12.74893 -12.60838 -12.54000 -12.32198 -12.25214 -12.16022 -11.41038 -11.30213 -11.24410 -11.10288 -11.03148 -10.89948 -10.62960 -10.42205 -10.33260 -10.26138 -10.12408 -9.88679 -8.82605 -8.80212 -8.53636 -7.56926 -7.40736 -6.16151 -4.59840 1.48146 1.51239 3.15278 3.22590 3.25890 3.89960 4.12885 4.62230 4.65195 4.79745 5.04991 5.10354 5.13464 5.16765 5.20814 5.36855 5.48019 5.56810 5.65985 5.69166 5.74254 5.80551 5.82775 6.04173 6.07477 6.08513 6.16353 6.18818 6.22345 6.34805 6.40018 6.47128 6.52637 6.59411 6.64355 6.66617 6.69580 6.86436 7.12100 7.46564 7.97778 8.15995 8.37519 9.06162 9.59103 10.63795 10.83288 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.004425 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.876897 B = 6326.437624 C = 6463.822782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.033 4.033 4 C -0.106 4.106 5 C -0.153 4.153 6 C 0.142 3.858 7 N -0.762 5.762 8 C 0.556 3.444 9 O -0.582 6.582 10 C -0.547 4.547 11 H 0.066 0.934 12 C 0.089 3.911 13 N -0.768 5.768 14 Si 0.905 3.095 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.047 4.047 19 C -0.118 4.118 20 C -0.123 4.123 21 C -0.133 4.133 22 C -0.118 4.118 23 C -0.119 4.119 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.378 0.622 37 H 0.267 0.733 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 -2.823 -17.056 17.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.033 4.033 4 C -0.143 4.143 5 C -0.210 4.210 6 C 0.017 3.983 7 N -0.419 5.419 8 C 0.360 3.640 9 O -0.465 6.465 10 C -0.584 4.584 11 H 0.084 0.916 12 C -0.131 4.131 13 N -0.397 5.397 14 Si 0.730 3.270 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.047 4.047 19 C -0.136 4.136 20 C -0.141 4.141 21 C -0.151 4.151 22 C -0.136 4.136 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.211 0.789 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.357 -1.948 -16.771 16.888 hybrid contribution 0.674 -0.730 0.570 1.145 sum 1.031 -2.677 -16.201 16.453 Atomic orbital electron populations 1.21807 0.95721 1.01286 1.02116 1.21537 0.96404 0.94636 1.01817 1.19880 0.95194 0.95133 0.93141 1.21536 0.93426 0.97888 1.01478 1.21807 0.99919 0.96607 1.02665 1.21038 0.97553 0.95358 0.84326 1.46142 1.57244 1.32809 1.05694 1.18180 0.80547 0.84441 0.80873 1.90593 1.42399 1.29094 1.84459 1.20883 1.37505 1.09412 0.90572 0.91551 1.25683 0.93642 0.94231 0.99523 1.70029 1.29479 1.18756 1.21466 0.86403 0.79667 0.80282 0.80651 1.19865 1.20513 1.18933 1.19686 0.95988 0.95110 0.93916 1.20928 1.00432 1.00152 0.92060 1.21043 0.98116 0.96390 0.98527 1.21064 0.99392 0.97867 0.96780 1.21149 0.99926 0.99812 0.92696 1.21357 0.96992 0.95529 0.99802 0.93216 0.91867 0.93028 0.92370 0.91042 0.91198 0.92370 0.93316 0.92932 0.91700 0.92960 0.93071 0.78940 0.92218 0.86422 0.86616 0.86678 0.86343 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.35 37.16 0.35 -1.76 16 2 C -0.11 -1.42 4.68 -26.73 -0.13 -1.55 16 3 C -0.03 -0.47 0.18 -155.66 -0.03 -0.50 16 4 C -0.11 -1.41 4.60 -26.73 -0.12 -1.54 16 5 C -0.15 -2.16 9.18 37.16 0.34 -1.82 16 6 C 0.14 2.68 2.59 -4.04 -0.01 2.67 16 7 N -0.76 -16.58 4.93 -61.72 -0.30 -16.88 16 8 C 0.56 15.66 7.74 -12.98 -0.10 15.56 16 9 O -0.58 -18.80 15.04 5.20 0.08 -18.73 16 10 C -0.55 -15.39 9.54 -35.63 -0.34 -15.72 16 11 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 12 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 13 N -0.77 -23.13 11.85 55.55 0.66 -22.48 16 14 Si 0.91 20.20 29.56 -169.99 -5.03 15.18 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 C -0.05 -0.63 2.08 -104.63 -0.22 -0.84 16 19 C -0.12 -1.39 8.78 -39.58 -0.35 -1.74 16 20 C -0.12 -1.34 10.05 -39.59 -0.40 -1.73 16 21 C -0.13 -1.47 10.05 -39.59 -0.40 -1.87 16 22 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.12 -1.68 8.98 -39.58 -0.36 -2.04 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.02 6.37 -51.93 -0.33 0.69 16 26 H 0.05 0.69 7.25 -51.93 -0.38 0.31 16 27 H 0.06 0.67 7.81 -51.93 -0.41 0.27 16 28 H 0.07 1.01 6.74 -51.93 -0.35 0.66 16 29 H 0.07 0.97 6.92 -51.93 -0.36 0.61 16 30 H 0.06 0.67 7.10 -51.93 -0.37 0.30 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.73 7.07 -51.93 -0.37 0.37 16 33 H 0.06 1.09 6.78 -51.93 -0.35 0.73 16 34 H 0.05 1.07 6.10 -51.93 -0.32 0.76 16 35 H 0.05 1.04 5.66 -51.93 -0.29 0.75 16 36 H 0.38 7.30 6.15 -40.82 -0.25 7.05 16 37 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 38 H 0.12 1.23 7.14 -52.48 -0.37 0.85 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.13 2.02 5.90 -52.49 -0.31 1.71 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -33.21 329.61 -7.99 -41.20 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.12 Total: 9.09 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -2.25 Total: -12.34 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.35 Total: -39.36 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.08 Total: -18.73 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.21 -7.99 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187442785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.093 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds