Wall clock time and date at job start Mon Mar 30 2020 02:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47001 * 2 1 4 4 C 1.53000 * 109.46954 * 184.92462 * 3 2 1 5 5 C 1.53003 * 109.46676 * 182.13191 * 4 3 2 6 6 C 1.53000 * 109.47025 * 64.92360 * 3 2 1 7 7 N 1.46495 * 109.47085 * 60.00411 * 6 3 2 8 8 C 1.34781 * 119.99964 * 179.97438 * 7 6 3 9 9 O 1.21682 * 119.99992 * 359.97438 * 8 7 6 10 10 C 1.46379 * 119.99921 * 179.97438 * 8 7 6 11 11 H 1.07998 * 120.00046 * 354.34369 * 10 8 7 12 12 C 1.40052 * 119.99933 * 174.34171 * 10 8 7 13 13 N 1.30669 * 119.99919 * 5.71264 * 12 10 8 14 14 Si 1.86796 * 119.99842 * 185.70845 * 12 10 8 15 15 H 1.48508 * 109.46891 * 94.99401 * 14 12 10 16 16 H 1.48497 * 109.47225 * 214.98895 * 14 12 10 17 17 H 1.48493 * 109.47545 * 334.99611 * 14 12 10 18 18 C 1.50698 * 109.47146 * 304.92608 * 3 2 1 19 19 C 1.38234 * 119.99885 * 296.10077 * 18 3 2 20 20 C 1.38238 * 120.00023 * 179.97438 * 19 18 3 21 21 C 1.38226 * 119.99992 * 0.09438 * 20 19 18 22 22 C 1.38231 * 120.00256 * 359.86136 * 21 20 19 23 23 C 1.38236 * 120.00295 * 116.07355 * 18 3 2 24 24 H 1.09000 * 109.47247 * 184.22446 * 1 2 3 25 25 H 1.09004 * 109.47283 * 304.22068 * 1 2 3 26 26 H 1.09002 * 109.46882 * 64.22193 * 1 2 3 27 27 H 1.08994 * 109.47415 * 240.00193 * 2 1 3 28 28 H 1.09000 * 109.46775 * 119.99625 * 2 1 3 29 29 H 1.08992 * 109.47112 * 302.13248 * 4 3 2 30 30 H 1.09002 * 109.46929 * 62.13887 * 4 3 2 31 31 H 1.09000 * 109.46782 * 186.74222 * 5 4 3 32 32 H 1.08998 * 109.47380 * 306.74101 * 5 4 3 33 33 H 1.09000 * 109.46955 * 66.74815 * 5 4 3 34 34 H 1.09000 * 109.46726 * 179.97438 * 6 3 2 35 35 H 1.08998 * 109.47775 * 299.99865 * 6 3 2 36 36 H 0.97002 * 120.00407 * 359.97438 * 7 6 3 37 37 H 0.97001 * 119.99752 * 179.97438 * 13 12 10 38 38 H 1.08008 * 119.99935 * 359.70156 * 19 18 3 39 39 H 1.08001 * 119.99864 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.00460 * 179.97438 * 21 20 19 41 41 H 1.07997 * 120.00594 * 180.02562 * 22 21 20 42 42 H 1.08000 * 119.99455 * 0.02562 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5650 1.4443 -0.1238 5 6 4.0792 2.8844 -0.0704 6 6 1.6336 2.1272 1.3065 7 7 2.2164 1.4033 2.4390 8 6 1.9918 1.8284 3.6981 9 8 1.3054 2.8139 3.8942 10 6 2.5737 1.1048 4.8296 11 1 3.1059 0.1799 4.6630 12 6 2.4404 1.6118 6.1283 13 7 1.7034 2.6689 6.3445 14 14 3.3160 0.7767 7.5514 15 1 4.6135 1.4548 7.8007 16 1 2.4715 0.8607 8.7701 17 1 3.5592 -0.6490 7.2150 18 6 1.4405 2.1873 -1.1649 19 6 1.7363 1.8004 -2.4586 20 6 1.1860 2.4832 -3.5272 21 6 0.3415 3.5541 -3.3021 22 6 0.0449 3.9404 -2.0084 23 6 0.5943 3.2570 -0.9398 24 1 -0.3634 -1.0249 0.0757 25 1 -0.3634 0.5780 0.8498 26 1 -0.3633 0.4469 -0.9254 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9969 0.8735 0.6981 30 1 3.8530 0.9907 -1.0722 31 1 5.1492 2.8959 -0.2779 32 1 3.5580 3.4843 -0.8163 33 1 3.8970 3.2987 0.9212 34 1 1.9973 3.1547 1.3067 35 1 0.5472 2.1260 1.3948 36 1 2.7639 0.6179 2.2827 37 1 1.6107 3.0199 7.2440 38 1 2.4009 0.9674 -2.6345 39 1 1.4175 2.1812 -4.5379 40 1 -0.0882 4.0879 -4.1369 41 1 -0.6153 4.7768 -1.8325 42 1 0.3632 3.5592 0.0710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187442785.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:08 Heat of formation + Delta-G solvation = -53.727725 kcal Electronic energy + Delta-G solvation = -21887.093497 eV Core-core repulsion = 18830.289919 eV Total energy + Delta-G solvation = -3056.803578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38052 -39.29775 -37.77564 -34.74584 -33.84553 -33.10277 -31.88133 -31.13217 -29.19838 -27.61589 -26.35441 -23.61883 -23.00878 -22.84906 -21.68923 -19.83853 -19.22267 -17.83665 -17.31591 -16.60650 -16.43881 -15.95692 -15.64037 -15.41160 -15.35490 -15.07603 -14.45968 -14.36524 -14.10767 -13.78220 -13.57405 -13.52198 -13.28621 -13.03151 -12.97820 -12.68109 -12.61241 -12.47265 -12.29442 -12.02954 -12.00037 -11.77565 -11.47163 -11.34624 -11.11351 -10.92618 -9.85132 -9.75844 -9.49866 -9.39793 -8.28728 -6.83386 0.53856 0.56640 1.39837 1.41168 1.56986 2.25044 2.49226 2.95193 3.14288 3.63491 3.64419 3.74850 3.99255 4.11132 4.20255 4.21497 4.34840 4.37134 4.50405 4.56201 4.57651 4.69160 4.73471 4.76371 4.82203 5.02894 5.07448 5.11232 5.16282 5.18097 5.22658 5.24843 5.33002 5.38322 5.39803 5.45492 5.66783 5.69366 5.82210 5.90010 6.19166 6.26936 6.31541 6.88227 7.58976 8.51960 8.69537 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029224 B = 0.004425 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.876897 B = 6326.437624 C = 6463.822782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.021 4.021 4 C -0.104 4.104 5 C -0.148 4.148 6 C 0.152 3.848 7 N -0.745 5.745 8 C 0.538 3.462 9 O -0.636 6.636 10 C -0.573 4.573 11 H 0.087 0.913 12 C 0.029 3.971 13 N -0.824 5.824 14 Si 0.997 3.003 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.247 1.247 18 C -0.056 4.056 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.128 4.128 23 C -0.146 4.146 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.025 0.975 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.393 0.607 37 H 0.273 0.727 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.126 0.874 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -5.187 -19.331 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.021 4.021 4 C -0.141 4.141 5 C -0.205 4.205 6 C 0.027 3.973 7 N -0.400 5.400 8 C 0.342 3.658 9 O -0.524 6.524 10 C -0.610 4.610 11 H 0.105 0.895 12 C -0.186 4.186 13 N -0.453 5.453 14 Si 0.817 3.183 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.170 1.170 18 C -0.056 4.056 19 C -0.135 4.135 20 C -0.135 4.135 21 C -0.149 4.149 22 C -0.146 4.146 23 C -0.164 4.164 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.228 0.772 37 H 0.083 0.917 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.144 0.856 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.119 -4.348 -19.102 19.705 hybrid contribution 0.069 0.071 1.175 1.180 sum 2.188 -4.277 -17.926 18.559 Atomic orbital electron populations 1.21748 0.96346 1.01517 1.00847 1.21565 0.95811 0.93798 1.03004 1.19756 0.96263 0.95464 0.90636 1.21572 0.92137 0.97280 1.03115 1.21744 1.01248 0.97161 1.00359 1.20997 0.95783 0.94498 0.85979 1.45761 1.56485 1.32886 1.04866 1.18606 0.80143 0.84031 0.82999 1.90546 1.44728 1.31362 1.85765 1.21422 1.37900 1.10348 0.91325 0.89461 1.26971 0.93960 0.94655 1.03010 1.70207 1.31415 1.20974 1.22738 0.85018 0.78065 0.79581 0.75680 1.18840 1.19870 1.16992 1.19574 0.96449 0.95109 0.94477 1.21158 1.00548 1.00762 0.91020 1.21448 0.96789 0.95429 0.99802 1.21406 0.98952 0.97962 0.96593 1.21313 1.00109 1.00040 0.93121 1.21241 0.99005 0.97242 0.98951 0.91749 0.95424 0.92413 0.88897 0.91935 0.91708 0.88829 0.91382 0.92899 0.95559 0.95522 0.95504 0.77221 0.91699 0.84024 0.83336 0.83987 0.85626 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.35 71.98 0.67 -3.36 16 2 C -0.10 -2.63 4.68 30.60 0.14 -2.49 16 3 C -0.02 -0.59 0.18 -52.93 -0.01 -0.60 16 4 C -0.10 -2.60 4.60 30.60 0.14 -2.46 16 5 C -0.15 -4.15 9.18 71.98 0.66 -3.49 16 6 C 0.15 6.16 2.59 86.38 0.22 6.39 16 7 N -0.74 -34.01 4.93 -467.42 -2.30 -36.31 16 8 C 0.54 31.96 7.74 86.36 0.67 32.63 16 9 O -0.64 -44.02 15.04 -4.29 -0.06 -44.09 16 10 C -0.57 -32.98 9.54 24.83 0.24 -32.75 16 11 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 12 C 0.03 1.64 5.50 85.31 0.47 2.10 16 13 N -0.82 -51.55 11.85 21.84 0.26 -51.29 16 14 Si 1.00 41.54 29.56 68.60 2.03 43.57 16 15 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 18 C -0.06 -1.46 2.08 -19.87 -0.04 -1.50 16 19 C -0.12 -2.37 8.78 22.27 0.20 -2.18 16 20 C -0.12 -2.08 10.05 22.27 0.22 -1.85 16 21 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 22 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 23 C -0.15 -4.35 8.98 22.27 0.20 -4.15 16 24 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 25 H 0.03 0.93 6.37 -2.38 -0.02 0.92 16 26 H 0.06 1.49 7.25 -2.39 -0.02 1.47 16 27 H 0.09 1.76 7.81 -2.39 -0.02 1.74 16 28 H 0.06 1.69 6.74 -2.39 -0.02 1.67 16 29 H 0.06 1.69 6.92 -2.39 -0.02 1.68 16 30 H 0.09 1.75 7.10 -2.39 -0.02 1.73 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.46 7.07 -2.39 -0.02 1.45 16 33 H 0.03 0.91 6.78 -2.39 -0.02 0.90 16 34 H 0.03 1.21 6.10 -2.39 -0.01 1.20 16 35 H 0.03 1.22 5.66 -2.39 -0.01 1.20 16 36 H 0.39 15.45 6.15 -92.71 -0.57 14.88 16 37 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 38 H 0.14 2.19 7.14 -2.91 -0.02 2.16 16 39 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.10 3.43 5.90 -2.91 -0.02 3.41 16 Total: -1.00 -77.49 329.61 4.60 -72.89 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.45 Total: 34.18 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 4.23 Total: -18.95 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -2.04 Total: -87.60 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.06 Total: -44.09 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -77.49 4.60 -72.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187442785.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.166 kcal (2) G-P(sol) polarization free energy of solvation -77.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds