Wall clock time and date at job start Mon Mar 30 2020 02:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46643 * 2 1 4 4 C 1.52998 * 109.46949 * 143.72855 * 3 2 1 5 5 C 1.53000 * 109.47210 * 23.72216 * 3 2 1 6 6 N 1.46499 * 109.46886 * 263.72529 * 3 2 1 7 7 C 1.46496 * 120.00370 * 103.12443 * 6 3 2 8 8 C 1.50702 * 109.47261 * 265.61463 * 7 6 3 9 9 H 1.08003 * 119.99790 * 4.80942 * 8 7 6 10 10 C 1.37878 * 120.00303 * 184.81483 * 8 7 6 11 11 N 1.31508 * 120.00184 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99737 * 359.97438 * 10 8 7 13 13 H 1.48489 * 109.47516 * 90.00033 * 12 10 8 14 14 H 1.48501 * 109.46922 * 209.99935 * 12 10 8 15 15 H 1.48500 * 109.47242 * 329.99443 * 12 10 8 16 16 C 1.34784 * 120.00009 * 283.12207 * 6 3 2 17 17 O 1.21548 * 120.00039 * 216.10167 * 16 6 3 18 18 C 1.47843 * 120.00168 * 36.09927 * 16 6 3 19 19 C 1.39577 * 120.14668 * 150.26052 * 18 16 6 20 20 C 1.37956 * 119.84912 * 179.97438 * 19 18 16 21 21 C 1.38352 * 120.15105 * 359.97438 * 20 19 18 22 22 C 1.38364 * 120.29238 * 0.05083 * 21 20 19 23 23 C 1.37956 * 120.14466 * 359.94912 * 22 21 20 24 24 H 1.09006 * 109.47158 * 303.48120 * 1 2 3 25 25 H 1.08997 * 109.47126 * 63.48678 * 1 2 3 26 26 H 1.09007 * 109.46512 * 183.48824 * 1 2 3 27 27 H 1.09002 * 109.47278 * 240.00372 * 2 1 3 28 28 H 1.08992 * 109.47323 * 119.99613 * 2 1 3 29 29 H 1.09006 * 109.46762 * 212.50288 * 4 3 2 30 30 H 1.09001 * 109.46903 * 332.49546 * 4 3 2 31 31 H 1.09000 * 109.47299 * 92.49737 * 4 3 2 32 32 H 1.08991 * 109.47216 * 301.89747 * 5 3 2 33 33 H 1.09007 * 109.46767 * 61.89815 * 5 3 2 34 34 H 1.08999 * 109.47046 * 181.88997 * 5 3 2 35 35 H 1.09006 * 109.46965 * 25.61082 * 7 6 3 36 36 H 1.09000 * 109.47712 * 145.60926 * 7 6 3 37 37 H 0.97002 * 120.00394 * 179.97438 * 11 10 8 38 38 H 1.07997 * 120.07082 * 359.70077 * 19 18 16 39 39 H 1.08005 * 119.91920 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.85715 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.93012 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.07525 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.3064 1.5359 0.8534 5 6 0.9648 2.3636 0.5803 6 7 2.3450 1.8527 -1.3730 7 6 1.4202 2.7266 -2.0991 8 6 0.4813 1.8873 -2.9268 9 1 0.5133 0.8102 -2.8542 10 6 -0.4186 2.4945 -3.7768 11 7 -1.2377 1.7621 -4.4995 12 14 -0.4744 4.3575 -3.9019 13 1 0.4570 4.8103 -4.9660 14 1 -1.8553 4.7900 -4.2358 15 1 -0.0696 4.9532 -2.6033 16 6 3.4765 1.4260 -1.9681 17 8 4.0800 2.1615 -2.7245 18 6 3.9837 0.0632 -1.7008 19 6 4.7116 -0.6179 -2.6777 20 6 5.1825 -1.8891 -2.4216 21 6 4.9351 -2.4887 -1.1996 22 6 4.2138 -1.8192 -0.2270 23 6 3.7372 -0.5476 -0.4702 24 1 -0.3634 0.5670 0.8572 25 1 -0.3633 0.4587 -0.9196 26 1 -0.3632 -1.0259 0.0625 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.3518 2.5150 1.3304 30 1 3.2869 0.7596 1.6184 31 1 4.1825 1.3994 0.2195 32 1 0.0517 2.2718 -0.0078 33 1 0.7620 2.0796 1.6130 34 1 1.3149 3.3954 0.5493 35 1 0.8459 3.3194 -1.3871 36 1 1.9855 3.3910 -2.7525 37 1 -1.8711 2.1892 -5.0973 38 1 4.9020 -0.1526 -3.6335 39 1 5.7455 -2.4174 -3.1769 40 1 5.3063 -3.4839 -1.0040 41 1 4.0237 -2.2929 0.7248 42 1 3.1747 -0.0259 0.2899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187525910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:27 Heat of formation + Delta-G solvation = 70.232524 kcal Electronic energy + Delta-G solvation = -22931.043137 eV Core-core repulsion = 19879.614880 eV Total energy + Delta-G solvation = -3051.428258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16982 -37.93502 -37.34392 -33.52330 -32.07777 -31.50363 -30.71056 -29.88162 -27.96492 -26.96662 -24.10924 -23.34536 -22.02685 -21.53251 -20.68753 -17.98086 -16.96728 -16.89176 -15.90214 -15.62385 -15.07937 -14.79646 -14.48041 -14.21076 -13.91884 -13.76723 -13.51523 -12.75931 -12.52510 -12.42055 -12.33482 -12.25698 -11.80770 -11.62414 -11.41436 -11.24214 -11.21570 -11.08256 -10.69914 -10.53512 -10.43676 -10.24739 -10.09873 -9.82401 -9.49592 -9.18589 -8.70680 -8.59952 -8.40175 -7.54139 -6.11010 -4.09712 1.23901 1.62194 3.20796 3.27746 3.34542 3.37598 3.74714 4.12834 4.38217 4.80439 4.93820 4.95445 5.10348 5.12555 5.20483 5.25828 5.37558 5.58221 5.62796 5.67378 5.75522 5.77614 5.93092 6.01697 6.03082 6.12589 6.14367 6.22301 6.28423 6.46931 6.56711 6.60901 6.62212 6.65745 6.69586 6.85801 6.94533 7.04852 7.13307 7.49337 7.59219 8.27263 8.46399 8.79389 8.95050 9.50157 11.01516 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.007149 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.629810 B = 3915.861662 C = 4338.244472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C 0.168 3.832 4 C -0.178 4.178 5 C -0.153 4.153 6 N -0.604 5.604 7 C 0.214 3.786 8 C -0.531 4.531 9 H 0.079 0.921 10 C 0.075 3.925 11 N -0.895 5.895 12 Si 0.871 3.129 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.579 3.421 17 O -0.532 6.532 18 C -0.136 4.136 19 C -0.063 4.063 20 C -0.141 4.141 21 C -0.102 4.102 22 C -0.148 4.148 23 C -0.132 4.132 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.040 0.960 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.962 -5.589 12.411 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C 0.082 3.918 4 C -0.235 4.235 5 C -0.210 4.210 6 N -0.338 5.338 7 C 0.094 3.906 8 C -0.570 4.570 9 H 0.097 0.903 10 C -0.128 4.128 11 N -0.533 5.533 12 Si 0.698 3.302 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.190 1.190 16 C 0.368 3.632 17 O -0.409 6.409 18 C -0.140 4.140 19 C -0.081 4.081 20 C -0.159 4.159 21 C -0.120 4.120 22 C -0.166 4.166 23 C -0.148 4.148 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.112 -5.140 11.854 15.256 hybrid contribution -0.182 0.656 -0.380 0.780 sum 7.930 -4.484 11.474 14.651 Atomic orbital electron populations 1.22164 0.95176 1.00904 1.03973 1.22814 0.97280 0.95908 1.01872 1.20447 0.94321 0.94685 0.82312 1.22885 0.98102 1.02343 1.00199 1.22286 0.99882 0.98450 1.00385 1.47627 1.21551 1.51630 1.12959 1.19762 0.88239 0.90442 0.92193 1.21427 1.17127 0.95427 1.22969 0.90267 1.24836 0.95213 0.97875 0.94872 1.69890 1.21765 1.35400 1.26239 0.86921 0.77438 0.86482 0.79338 1.19999 1.21128 1.18995 1.18020 0.80131 0.85569 0.79490 1.90674 1.55710 1.56069 1.38398 1.20357 1.01576 0.96180 0.95874 1.21253 0.93941 0.94087 0.98865 1.21018 1.01973 0.95420 0.97497 1.21253 0.97795 0.99327 0.93673 1.21046 1.00531 0.95470 0.99588 1.23993 0.95876 0.96008 0.98956 0.92895 0.89325 0.93915 0.89527 0.91958 0.91785 0.90890 0.91122 0.89396 0.91914 0.92477 0.94262 0.95033 0.92581 0.85381 0.85998 0.86394 0.86114 0.79013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.60 37.16 0.32 -2.32 16 2 C -0.14 -2.15 3.92 -26.73 -0.10 -2.26 16 3 C 0.17 2.70 0.89 -131.82 -0.12 2.59 16 4 C -0.18 -2.36 7.62 37.16 0.28 -2.07 16 5 C -0.15 -2.29 5.60 37.16 0.21 -2.09 16 6 N -0.60 -12.56 2.36 -161.28 -0.38 -12.94 16 7 C 0.21 5.12 3.92 -5.19 -0.02 5.10 16 8 C -0.53 -14.51 8.90 -34.44 -0.31 -14.81 16 9 H 0.08 2.36 7.47 -52.48 -0.39 1.97 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.89 -26.78 13.96 55.43 0.77 -26.00 16 12 Si 0.87 21.27 27.38 -169.99 -4.65 16.62 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.12 6.68 56.52 0.38 -5.74 16 16 C 0.58 12.59 5.77 -12.33 -0.07 12.51 16 17 O -0.53 -13.25 16.67 5.32 0.09 -13.16 16 18 C -0.14 -2.49 4.86 -104.96 -0.51 -3.00 16 19 C -0.06 -1.07 9.60 -39.19 -0.38 -1.44 16 20 C -0.14 -1.95 10.03 -39.64 -0.40 -2.34 16 21 C -0.10 -1.27 10.04 -39.49 -0.40 -1.66 16 22 C -0.15 -1.88 10.03 -39.64 -0.40 -2.28 16 23 C -0.13 -1.96 4.40 -39.18 -0.17 -2.13 16 24 H 0.05 0.73 6.23 -51.93 -0.32 0.40 16 25 H 0.09 1.79 6.06 -51.93 -0.31 1.47 16 26 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.09 1.55 5.03 -51.93 -0.26 1.28 16 28 H 0.06 0.75 6.41 -51.93 -0.33 0.42 16 29 H 0.06 0.78 7.80 -51.93 -0.41 0.38 16 30 H 0.07 0.75 6.75 -51.93 -0.35 0.40 16 31 H 0.07 1.05 4.81 -51.93 -0.25 0.80 16 32 H 0.09 1.50 5.42 -51.93 -0.28 1.22 16 33 H 0.06 0.74 7.69 -51.93 -0.40 0.34 16 34 H 0.06 0.85 7.67 -51.93 -0.40 0.46 16 35 H 0.04 0.89 4.82 -51.93 -0.25 0.64 16 36 H 0.03 0.83 6.64 -51.93 -0.35 0.48 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.13 2.24 7.92 -52.49 -0.42 1.82 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.19 2.61 0.40 -114.48 -0.05 2.56 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -32.01 312.67 -7.23 -39.25 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.62 Total: 5.73 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -2.16 Total: -14.20 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.39 Total: -38.94 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.65 Total: 16.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.01 -7.23 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187525910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.479 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds