Wall clock time and date at job start Mon Mar 30 2020 02:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46643 * 2 1 4 4 C 1.52998 * 109.46949 * 143.72855 * 3 2 1 5 5 C 1.53000 * 109.47210 * 23.72216 * 3 2 1 6 6 N 1.46499 * 109.46886 * 263.72529 * 3 2 1 7 7 C 1.46496 * 120.00370 * 103.12443 * 6 3 2 8 8 C 1.50702 * 109.47261 * 265.61463 * 7 6 3 9 9 H 1.08003 * 119.99790 * 4.80942 * 8 7 6 10 10 C 1.37878 * 120.00303 * 184.81483 * 8 7 6 11 11 N 1.31508 * 120.00184 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99737 * 359.97438 * 10 8 7 13 13 H 1.48489 * 109.47516 * 90.00033 * 12 10 8 14 14 H 1.48501 * 109.46922 * 209.99935 * 12 10 8 15 15 H 1.48500 * 109.47242 * 329.99443 * 12 10 8 16 16 C 1.34784 * 120.00009 * 283.12207 * 6 3 2 17 17 O 1.21548 * 120.00039 * 216.10167 * 16 6 3 18 18 C 1.47843 * 120.00168 * 36.09927 * 16 6 3 19 19 C 1.39577 * 120.14668 * 150.26052 * 18 16 6 20 20 C 1.37956 * 119.84912 * 179.97438 * 19 18 16 21 21 C 1.38352 * 120.15105 * 359.97438 * 20 19 18 22 22 C 1.38364 * 120.29238 * 0.05083 * 21 20 19 23 23 C 1.37956 * 120.14466 * 359.94912 * 22 21 20 24 24 H 1.09006 * 109.47158 * 303.48120 * 1 2 3 25 25 H 1.08997 * 109.47126 * 63.48678 * 1 2 3 26 26 H 1.09007 * 109.46512 * 183.48824 * 1 2 3 27 27 H 1.09002 * 109.47278 * 240.00372 * 2 1 3 28 28 H 1.08992 * 109.47323 * 119.99613 * 2 1 3 29 29 H 1.09006 * 109.46762 * 212.50288 * 4 3 2 30 30 H 1.09001 * 109.46903 * 332.49546 * 4 3 2 31 31 H 1.09000 * 109.47299 * 92.49737 * 4 3 2 32 32 H 1.08991 * 109.47216 * 301.89747 * 5 3 2 33 33 H 1.09007 * 109.46767 * 61.89815 * 5 3 2 34 34 H 1.08999 * 109.47046 * 181.88997 * 5 3 2 35 35 H 1.09006 * 109.46965 * 25.61082 * 7 6 3 36 36 H 1.09000 * 109.47712 * 145.60926 * 7 6 3 37 37 H 0.97002 * 120.00394 * 179.97438 * 11 10 8 38 38 H 1.07997 * 120.07082 * 359.70077 * 19 18 16 39 39 H 1.08005 * 119.91920 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.85715 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.93012 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.07525 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.3064 1.5359 0.8534 5 6 0.9648 2.3636 0.5803 6 7 2.3450 1.8527 -1.3730 7 6 1.4202 2.7266 -2.0991 8 6 0.4813 1.8873 -2.9268 9 1 0.5133 0.8102 -2.8542 10 6 -0.4186 2.4945 -3.7768 11 7 -1.2377 1.7621 -4.4995 12 14 -0.4744 4.3575 -3.9019 13 1 0.4570 4.8103 -4.9660 14 1 -1.8553 4.7900 -4.2358 15 1 -0.0696 4.9532 -2.6033 16 6 3.4765 1.4260 -1.9681 17 8 4.0800 2.1615 -2.7245 18 6 3.9837 0.0632 -1.7008 19 6 4.7116 -0.6179 -2.6777 20 6 5.1825 -1.8891 -2.4216 21 6 4.9351 -2.4887 -1.1996 22 6 4.2138 -1.8192 -0.2270 23 6 3.7372 -0.5476 -0.4702 24 1 -0.3634 0.5670 0.8572 25 1 -0.3633 0.4587 -0.9196 26 1 -0.3632 -1.0259 0.0625 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.3518 2.5150 1.3304 30 1 3.2869 0.7596 1.6184 31 1 4.1825 1.3994 0.2195 32 1 0.0517 2.2718 -0.0078 33 1 0.7620 2.0796 1.6130 34 1 1.3149 3.3954 0.5493 35 1 0.8459 3.3194 -1.3871 36 1 1.9855 3.3910 -2.7525 37 1 -1.8711 2.1892 -5.0973 38 1 4.9020 -0.1526 -3.6335 39 1 5.7455 -2.4174 -3.1769 40 1 5.3063 -3.4839 -1.0040 41 1 4.0237 -2.2929 0.7248 42 1 3.1747 -0.0259 0.2899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187525910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:27 Heat of formation + Delta-G solvation = 50.059746 kcal Electronic energy + Delta-G solvation = -22931.917895 eV Core-core repulsion = 19879.614880 eV Total energy + Delta-G solvation = -3052.303015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.51568 -39.18094 -38.88879 -35.41541 -33.93280 -32.79315 -31.86959 -31.15840 -29.62753 -28.31537 -25.50277 -24.78608 -23.37117 -22.99762 -22.06780 -19.36719 -19.08070 -18.24428 -17.37911 -17.00592 -16.56429 -16.20821 -15.96465 -15.51460 -15.44924 -15.09469 -14.75832 -14.60832 -14.09604 -13.79211 -13.63640 -13.37196 -13.32593 -13.07815 -12.98599 -12.70824 -12.46763 -12.35637 -12.27859 -12.11507 -11.88380 -11.77480 -11.59344 -11.50934 -10.96485 -10.82558 -10.79895 -9.88050 -9.55595 -9.19616 -8.32354 -6.34943 0.01819 0.51638 1.29293 1.33398 1.41366 1.68808 2.25495 2.29906 2.93092 3.02092 3.58597 3.72438 3.79950 3.92965 4.05101 4.18907 4.31764 4.43975 4.52442 4.56083 4.63046 4.68501 4.70968 4.81098 4.85072 4.88645 4.93907 5.01389 5.04938 5.11998 5.16467 5.25338 5.38071 5.45467 5.46433 5.46903 5.56169 5.59119 5.68716 5.79738 6.06520 6.30828 6.66245 6.71153 7.12120 7.30929 8.83504 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.007149 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.629810 B = 3915.861662 C = 4338.244472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C 0.155 3.845 4 C -0.175 4.175 5 C -0.153 4.153 6 N -0.609 5.609 7 C 0.223 3.777 8 C -0.522 4.522 9 H 0.041 0.959 10 C 0.018 3.982 11 N -0.940 5.940 12 Si 0.933 3.067 13 H -0.282 1.282 14 H -0.274 1.274 15 H -0.242 1.242 16 C 0.568 3.432 17 O -0.586 6.586 18 C -0.170 4.170 19 C -0.094 4.094 20 C -0.143 4.143 21 C -0.091 4.091 22 C -0.142 4.142 23 C -0.127 4.127 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.005 0.995 37 H 0.267 0.733 38 H 0.102 0.898 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.687 -6.943 16.373 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.175 4.175 3 C 0.071 3.929 4 C -0.231 4.231 5 C -0.210 4.210 6 N -0.342 5.342 7 C 0.102 3.898 8 C -0.561 4.561 9 H 0.059 0.941 10 C -0.181 4.181 11 N -0.580 5.580 12 Si 0.757 3.243 13 H -0.208 1.208 14 H -0.199 1.199 15 H -0.165 1.165 16 C 0.360 3.640 17 O -0.467 6.467 18 C -0.173 4.173 19 C -0.113 4.113 20 C -0.160 4.160 21 C -0.108 4.108 22 C -0.159 4.159 23 C -0.143 4.143 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.135 0.865 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.023 0.977 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.163 0.837 40 H 0.178 0.822 41 H 0.184 0.816 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.833 -6.514 15.868 19.293 hybrid contribution -0.377 0.922 -1.591 1.877 sum 8.456 -5.592 14.276 17.509 Atomic orbital electron populations 1.22082 0.95963 1.01374 1.02310 1.22802 0.96498 0.95486 1.02696 1.20936 0.96455 0.95466 0.80065 1.22862 0.95296 1.04797 1.00186 1.22305 0.98104 0.98293 1.02322 1.47722 1.20527 1.51119 1.14785 1.19430 0.87934 0.90271 0.92198 1.21538 1.17404 0.93999 1.23173 0.94123 1.25670 0.94937 1.02834 0.94630 1.70025 1.22972 1.37518 1.27516 0.85930 0.77656 0.80663 0.80075 1.20842 1.19922 1.16478 1.18770 0.80005 0.86782 0.78483 1.90614 1.57639 1.57673 1.40769 1.20207 1.04080 0.94724 0.98305 1.21292 0.95740 0.96064 0.98189 1.21311 1.01566 0.93942 0.99218 1.21781 0.96051 1.00691 0.92314 1.21582 0.98855 0.94175 1.01328 1.24146 0.95633 0.97014 0.97535 0.90262 0.94642 0.92928 0.92429 0.87019 0.90547 0.86477 0.93047 0.92122 0.87559 0.92672 0.92271 0.97687 0.92438 0.88004 0.83659 0.82220 0.81642 0.77710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 8.60 71.98 0.62 -4.31 16 2 C -0.14 -3.88 3.92 30.60 0.12 -3.76 16 3 C 0.15 4.72 0.89 3.61 0.00 4.72 16 4 C -0.17 -4.03 7.62 71.98 0.55 -3.48 16 5 C -0.15 -4.24 5.60 71.98 0.40 -3.84 16 6 N -0.61 -26.09 2.36 -782.43 -1.85 -27.94 16 7 C 0.22 11.13 3.92 85.63 0.34 11.46 16 8 C -0.52 -30.19 8.90 25.60 0.23 -29.96 16 9 H 0.04 2.61 7.47 -2.91 -0.02 2.59 16 10 C 0.02 1.04 5.47 84.66 0.46 1.50 16 11 N -0.94 -58.88 13.96 21.45 0.30 -58.59 16 12 Si 0.93 45.09 27.38 68.60 1.88 46.97 16 13 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.24 -10.62 6.68 99.48 0.66 -9.96 16 16 C 0.57 26.10 5.77 86.78 0.50 26.61 16 17 O -0.59 -31.58 16.67 -3.87 -0.06 -31.65 16 18 C -0.17 -6.37 4.86 -20.09 -0.10 -6.47 16 19 C -0.09 -3.35 9.60 22.53 0.22 -3.14 16 20 C -0.14 -3.73 10.03 22.23 0.22 -3.51 16 21 C -0.09 -1.85 10.04 22.33 0.22 -1.63 16 22 C -0.14 -2.91 10.03 22.23 0.22 -2.69 16 23 C -0.13 -3.47 4.40 22.53 0.10 -3.37 16 24 H 0.08 1.96 6.23 -2.38 -0.01 1.95 16 25 H 0.03 1.47 6.06 -2.39 -0.01 1.45 16 26 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 2.02 5.03 -2.39 -0.01 2.01 16 28 H 0.11 2.06 6.41 -2.39 -0.02 2.04 16 29 H 0.08 1.59 7.80 -2.38 -0.02 1.57 16 30 H 0.12 1.67 6.75 -2.39 -0.02 1.65 16 31 H 0.05 1.44 4.81 -2.39 -0.01 1.43 16 32 H 0.06 2.03 5.42 -2.39 -0.01 2.01 16 33 H 0.11 2.00 7.69 -2.38 -0.02 1.98 16 34 H 0.05 1.53 7.67 -2.39 -0.02 1.52 16 35 H 0.06 2.70 4.82 -2.38 -0.01 2.69 16 36 H 0.01 0.28 6.64 -2.39 -0.02 0.26 16 37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 38 H 0.10 4.00 7.92 -2.91 -0.02 3.97 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.21 4.82 0.40 -61.14 -0.02 4.80 16 Total: -1.00 -78.42 312.67 5.34 -73.08 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.97 Total: 19.99 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.11 Total: -21.86 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -1.55 Total: -86.53 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.06 Total: -31.65 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -78.42 5.34 -73.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187525910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.141 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds