Wall clock time and date at job start Mon Mar 30 2020 01:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 C 1.38233 * 120.00109 * 269.72529 * 3 2 1 5 5 C 1.38238 * 119.99754 * 179.76611 * 4 3 2 6 6 C 1.38234 * 120.00016 * 0.50732 * 5 4 3 7 7 C 1.50696 * 120.00209 * 179.72225 * 6 5 4 8 8 C 1.53003 * 109.47268 * 120.02505 * 7 6 5 9 9 C 1.52998 * 109.47408 * 240.02399 * 7 6 5 10 10 C 1.52998 * 109.46934 * 0.02612 * 7 6 5 11 11 N 1.46505 * 109.47198 * 179.97438 * 10 7 6 12 12 C 1.34777 * 119.99963 * 180.02562 * 11 10 7 13 13 O 1.21683 * 120.00099 * 359.97438 * 12 11 10 14 14 C 1.46375 * 119.99641 * 179.97438 * 12 11 10 15 15 H 1.07997 * 120.00485 * 359.97438 * 14 12 11 16 16 C 1.40051 * 119.99892 * 179.97438 * 14 12 11 17 17 N 1.30678 * 120.00019 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00297 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.46910 * 90.00072 * 18 16 14 20 20 H 1.48499 * 109.47192 * 210.00554 * 18 16 14 21 21 H 1.48498 * 109.46850 * 330.00124 * 18 16 14 22 22 C 1.38238 * 120.00063 * 359.74632 * 6 5 4 23 23 C 1.38235 * 120.00108 * 0.02562 * 22 6 5 24 24 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 25 25 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 27 27 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 28 28 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 29 29 H 1.08004 * 119.99934 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.99924 * 180.23621 * 5 4 3 31 31 H 1.08995 * 109.47207 * 60.00005 * 8 7 6 32 32 H 1.08991 * 109.47238 * 180.02562 * 8 7 6 33 33 H 1.09008 * 109.46878 * 299.99942 * 8 7 6 34 34 H 1.09002 * 109.46650 * 60.00023 * 9 7 6 35 35 H 1.09001 * 109.47203 * 179.97438 * 9 7 6 36 36 H 1.08995 * 109.47028 * 299.99970 * 9 7 6 37 37 H 1.08999 * 109.47537 * 299.99625 * 10 7 6 38 38 H 1.08995 * 109.47177 * 59.99775 * 10 7 6 39 39 H 0.97005 * 119.99832 * 359.97438 * 11 10 7 40 40 H 0.96998 * 120.00189 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00578 * 179.97438 * 22 6 5 42 42 H 1.07999 * 120.00165 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3756 -1.1971 6 6 2.9547 4.0272 0.0001 7 6 3.4579 5.4476 0.0002 8 6 2.4508 6.3455 0.7216 9 6 4.8058 5.5112 0.7215 10 6 3.6282 5.9284 -1.4422 11 7 4.1169 7.3096 -1.4422 12 6 4.3413 7.9450 -2.6094 13 8 4.1385 7.3714 -3.6632 14 6 4.8290 9.3251 -2.6093 15 1 5.0086 9.8343 -1.6740 16 6 5.0627 9.9853 -3.8221 17 7 4.8449 9.3694 -4.9539 18 14 5.6845 11.7468 -3.8221 19 1 7.1693 11.7475 -3.8213 20 1 5.1896 12.4464 -5.0349 21 1 5.1884 12.4467 -2.6099 22 6 2.7239 3.3756 1.1973 23 6 2.2632 2.0723 1.1973 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 2.0920 1.5601 -2.1324 30 1 2.9049 3.8845 -2.1323 31 1 2.3294 6.0030 1.7492 32 1 2.8145 7.3729 0.7212 33 1 1.4905 6.3003 0.2077 34 1 5.5233 4.8715 0.2075 35 1 5.1700 6.5385 0.7211 36 1 4.6844 5.1687 1.7491 37 1 4.3458 5.2888 -1.9562 38 1 2.6680 5.8831 -1.9560 39 1 4.2782 7.7669 -0.6021 40 1 5.0071 9.8264 -5.7939 41 1 2.9042 3.8845 2.1326 42 1 2.0833 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187769352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:53 Heat of formation + Delta-G solvation = -40.607647 kcal Electronic energy + Delta-G solvation = -20934.453111 eV Core-core repulsion = 17878.218462 eV Total energy + Delta-G solvation = -3056.234648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96033 -37.74041 -36.16860 -33.64061 -32.51379 -31.55176 -30.87309 -28.64445 -27.03873 -26.98284 -25.18986 -23.86823 -22.19516 -21.25424 -19.78960 -18.78782 -17.38934 -16.18800 -15.54019 -15.30107 -14.87595 -14.35861 -14.31100 -14.19227 -13.73236 -13.66685 -13.33616 -13.09167 -12.98620 -12.79996 -12.49158 -12.14646 -12.01036 -11.63749 -11.45128 -11.34736 -11.29419 -11.08589 -10.97549 -10.96515 -10.59931 -10.45498 -10.43158 -10.18334 -10.09208 -8.83032 -8.80272 -8.39683 -7.57794 -7.43278 -6.15512 -4.60667 1.43118 1.51463 3.15632 3.22323 3.25673 3.83379 4.12713 4.62711 4.63107 4.72635 4.79507 4.93611 5.09912 5.15820 5.20863 5.26915 5.28545 5.40530 5.47550 5.55605 5.60004 5.71848 5.82161 5.85545 5.87366 5.99405 6.00795 6.01842 6.10452 6.17680 6.24122 6.36230 6.38868 6.51680 6.61980 6.63282 6.68454 6.82636 7.11974 7.46021 7.97139 8.15015 8.36585 9.05602 9.58518 10.63780 10.82963 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.003450 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.085983 B = 8113.144644 C = 8607.971429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.062 4.062 7 C -0.038 4.038 8 C -0.134 4.134 9 C -0.134 4.134 10 C 0.144 3.856 11 N -0.765 5.765 12 C 0.555 3.445 13 O -0.582 6.582 14 C -0.546 4.546 15 H 0.066 0.934 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.907 3.093 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.113 4.113 23 C -0.120 4.120 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.379 0.621 40 H 0.267 0.733 41 H 0.119 0.881 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 -13.660 13.188 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.133 4.133 5 C -0.132 4.132 6 C -0.063 4.063 7 C -0.039 4.039 8 C -0.192 4.192 9 C -0.192 4.192 10 C 0.019 3.981 11 N -0.421 5.421 12 C 0.359 3.641 13 O -0.465 6.465 14 C -0.583 4.583 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.131 4.131 23 C -0.138 4.138 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.211 0.789 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.452 -14.086 12.188 19.408 hybrid contribution 0.390 1.077 0.372 1.204 sum -5.062 -13.009 12.559 18.777 Atomic orbital electron populations 1.21748 0.94923 1.01414 1.02292 1.20510 0.96049 0.92953 1.02513 1.19838 1.00121 0.96142 0.93330 1.21023 1.00019 0.94936 0.97364 1.21352 0.98619 0.94607 0.98618 1.19785 0.98241 0.95180 0.93088 1.19756 0.95837 0.91249 0.97030 1.21844 0.98675 0.99456 0.99182 1.21843 0.95599 1.02531 0.99184 1.20972 0.98647 0.85815 0.92671 1.46174 1.73930 1.12642 1.09387 1.18196 0.77632 0.86967 0.81344 1.90592 1.56556 1.68534 1.30823 1.20880 1.47260 0.96995 0.93164 0.91540 1.25705 0.93447 0.98976 0.95083 1.70026 1.35556 1.36327 0.97841 0.86392 0.79380 0.82710 0.78369 1.19786 1.20498 1.18956 1.20917 1.00006 0.94610 0.97567 1.20910 1.00797 0.94935 0.97196 0.92487 0.92643 0.92638 0.91228 0.91360 0.86333 0.85033 0.92922 0.91714 0.92519 0.92513 0.91712 0.92920 0.93228 0.93240 0.78857 0.92178 0.86313 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.73 6.07 -27.88 -0.17 -0.90 16 3 C -0.09 -1.07 5.13 -104.62 -0.54 -1.61 16 4 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 5 C -0.11 -1.66 8.98 -39.58 -0.36 -2.02 16 6 C -0.06 -0.87 4.76 -104.63 -0.50 -1.37 16 7 C -0.04 -0.57 0.61 -155.66 -0.10 -0.66 16 8 C -0.13 -1.83 8.11 37.16 0.30 -1.52 16 9 C -0.13 -1.82 8.11 37.16 0.30 -1.52 16 10 C 0.14 2.80 3.22 -4.04 -0.01 2.79 16 11 N -0.76 -17.09 4.95 -61.72 -0.31 -17.39 16 12 C 0.55 15.91 7.75 -12.99 -0.10 15.81 16 13 O -0.58 -19.06 15.02 5.20 0.08 -18.98 16 14 C -0.55 -15.52 9.54 -35.63 -0.34 -15.86 16 15 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 16 C 0.09 2.46 5.50 -17.36 -0.10 2.37 16 17 N -0.77 -23.29 11.83 55.55 0.66 -22.64 16 18 Si 0.91 20.29 29.56 -169.99 -5.02 15.26 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.11 -1.37 8.71 -39.58 -0.34 -1.72 16 23 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 24 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.13 2.07 5.90 -52.49 -0.31 1.76 16 31 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 32 H 0.06 0.90 6.86 -51.93 -0.36 0.54 16 33 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.90 6.86 -51.93 -0.36 0.54 16 36 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 37 H 0.05 1.04 7.51 -51.93 -0.39 0.65 16 38 H 0.05 1.04 7.51 -51.93 -0.39 0.65 16 39 H 0.38 7.45 6.14 -40.82 -0.25 7.19 16 40 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 41 H 0.12 1.25 7.10 -52.49 -0.37 0.87 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 340.28 15.07 5.13 5.13 Total: -1.00 -33.92 340.28 -8.35 -42.28 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.54 Total: 6.97 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.35 Total: -10.62 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.35 Total: -40.03 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.08 Total: -18.98 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.92 -8.35 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187769352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.667 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds