Wall clock time and date at job start Mon Mar 30 2020 01:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 C 1.38233 * 120.00109 * 269.72529 * 3 2 1 5 5 C 1.38238 * 119.99754 * 179.76611 * 4 3 2 6 6 C 1.38234 * 120.00016 * 0.50732 * 5 4 3 7 7 C 1.50696 * 120.00209 * 179.72225 * 6 5 4 8 8 C 1.53003 * 109.47268 * 120.02505 * 7 6 5 9 9 C 1.52998 * 109.47408 * 240.02399 * 7 6 5 10 10 C 1.52998 * 109.46934 * 0.02612 * 7 6 5 11 11 N 1.46505 * 109.47198 * 179.97438 * 10 7 6 12 12 C 1.34777 * 119.99963 * 180.02562 * 11 10 7 13 13 O 1.21683 * 120.00099 * 359.97438 * 12 11 10 14 14 C 1.46375 * 119.99641 * 179.97438 * 12 11 10 15 15 H 1.07997 * 120.00485 * 359.97438 * 14 12 11 16 16 C 1.40051 * 119.99892 * 179.97438 * 14 12 11 17 17 N 1.30678 * 120.00019 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00297 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.46910 * 90.00072 * 18 16 14 20 20 H 1.48499 * 109.47192 * 210.00554 * 18 16 14 21 21 H 1.48498 * 109.46850 * 330.00124 * 18 16 14 22 22 C 1.38238 * 120.00063 * 359.74632 * 6 5 4 23 23 C 1.38235 * 120.00108 * 0.02562 * 22 6 5 24 24 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 25 25 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 27 27 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 28 28 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 29 29 H 1.08004 * 119.99934 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.99924 * 180.23621 * 5 4 3 31 31 H 1.08995 * 109.47207 * 60.00005 * 8 7 6 32 32 H 1.08991 * 109.47238 * 180.02562 * 8 7 6 33 33 H 1.09008 * 109.46878 * 299.99942 * 8 7 6 34 34 H 1.09002 * 109.46650 * 60.00023 * 9 7 6 35 35 H 1.09001 * 109.47203 * 179.97438 * 9 7 6 36 36 H 1.08995 * 109.47028 * 299.99970 * 9 7 6 37 37 H 1.08999 * 109.47537 * 299.99625 * 10 7 6 38 38 H 1.08995 * 109.47177 * 59.99775 * 10 7 6 39 39 H 0.97005 * 119.99832 * 359.97438 * 11 10 7 40 40 H 0.96998 * 120.00189 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00578 * 179.97438 * 22 6 5 42 42 H 1.07999 * 120.00165 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3756 -1.1971 6 6 2.9547 4.0272 0.0001 7 6 3.4579 5.4476 0.0002 8 6 2.4508 6.3455 0.7216 9 6 4.8058 5.5112 0.7215 10 6 3.6282 5.9284 -1.4422 11 7 4.1169 7.3096 -1.4422 12 6 4.3413 7.9450 -2.6094 13 8 4.1385 7.3714 -3.6632 14 6 4.8290 9.3251 -2.6093 15 1 5.0086 9.8343 -1.6740 16 6 5.0627 9.9853 -3.8221 17 7 4.8449 9.3694 -4.9539 18 14 5.6845 11.7468 -3.8221 19 1 7.1693 11.7475 -3.8213 20 1 5.1896 12.4464 -5.0349 21 1 5.1884 12.4467 -2.6099 22 6 2.7239 3.3756 1.1973 23 6 2.2632 2.0723 1.1973 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 2.0920 1.5601 -2.1324 30 1 2.9049 3.8845 -2.1323 31 1 2.3294 6.0030 1.7492 32 1 2.8145 7.3729 0.7212 33 1 1.4905 6.3003 0.2077 34 1 5.5233 4.8715 0.2075 35 1 5.1700 6.5385 0.7211 36 1 4.6844 5.1687 1.7491 37 1 4.3458 5.2888 -1.9562 38 1 2.6680 5.8831 -1.9560 39 1 4.2782 7.7669 -0.6021 40 1 5.0071 9.8264 -5.7939 41 1 2.9042 3.8845 2.1326 42 1 2.0833 1.5631 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187769352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:52 Heat of formation + Delta-G solvation = -61.367024 kcal Electronic energy + Delta-G solvation = -20935.353305 eV Core-core repulsion = 17878.218462 eV Total energy + Delta-G solvation = -3057.134842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07484 -39.45457 -37.74470 -34.93132 -34.47977 -33.21290 -31.91566 -29.59014 -28.94142 -28.15063 -26.86249 -24.80027 -23.28642 -22.28727 -21.63881 -20.15538 -19.25051 -17.66412 -17.09797 -16.65834 -16.05251 -15.87185 -15.75776 -15.68885 -14.85190 -14.64756 -14.53474 -14.46810 -14.22739 -13.99787 -13.96446 -13.46478 -13.20701 -13.07389 -12.83602 -12.64054 -12.62275 -12.54868 -12.35993 -12.16261 -12.00571 -11.92948 -11.78620 -11.44719 -11.33928 -10.93553 -9.88375 -9.80100 -9.46891 -9.37285 -8.29298 -6.85796 0.45075 0.52653 1.39828 1.41804 1.57077 2.24661 2.47273 2.85191 3.10692 3.61575 3.64427 3.77561 3.98204 4.03575 4.04432 4.16723 4.24799 4.37850 4.53586 4.59390 4.68456 4.71931 4.73554 4.76298 4.84877 4.97570 4.97913 5.04260 5.07138 5.10390 5.19462 5.24005 5.29113 5.31537 5.39836 5.40677 5.58370 5.75499 5.77002 5.87518 6.15434 6.24149 6.27207 6.86393 7.55916 8.49569 8.67664 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036163 B = 0.003450 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.085983 B = 8113.144644 C = 8607.971429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.126 4.126 5 C -0.141 4.141 6 C -0.077 4.077 7 C -0.026 4.026 8 C -0.131 4.131 9 C -0.131 4.131 10 C 0.151 3.849 11 N -0.748 5.748 12 C 0.536 3.464 13 O -0.636 6.636 14 C -0.572 4.572 15 H 0.089 0.911 16 C 0.026 3.974 17 N -0.824 5.824 18 Si 1.000 3.000 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.247 1.247 22 C -0.110 4.110 23 C -0.117 4.117 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.395 0.605 40 H 0.274 0.726 41 H 0.144 0.856 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -13.569 16.509 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.144 4.144 5 C -0.160 4.160 6 C -0.078 4.078 7 C -0.027 4.027 8 C -0.188 4.188 9 C -0.188 4.188 10 C 0.026 3.974 11 N -0.404 5.404 12 C 0.340 3.660 13 O -0.524 6.524 14 C -0.609 4.609 15 H 0.107 0.893 16 C -0.188 4.188 17 N -0.453 5.453 18 Si 0.819 3.181 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.171 1.171 22 C -0.128 4.128 23 C -0.135 4.135 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.142 0.858 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.162 0.838 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.401 -14.012 15.577 21.637 hybrid contribution 0.328 0.924 -0.660 1.182 sum -5.072 -13.089 14.917 20.483 Atomic orbital electron populations 1.21737 0.94328 1.02386 1.01764 1.20572 0.96443 0.91253 1.03621 1.20183 0.98946 0.97393 0.92786 1.21158 1.00241 0.94330 0.98715 1.21261 1.00855 0.95834 0.98001 1.19735 0.99536 0.94705 0.93794 1.19635 0.97354 0.92216 0.93479 1.21837 0.97387 0.98929 1.00683 1.21837 0.94176 1.02136 1.00686 1.20971 0.96341 0.83833 0.96229 1.45819 1.72519 1.13586 1.08478 1.18658 0.77516 0.87777 0.82042 1.90546 1.58881 1.69778 1.33151 1.21428 1.47539 0.97254 0.94662 0.89309 1.27023 0.92894 1.04813 0.94117 1.70206 1.36852 1.39230 0.99032 0.84991 0.78938 0.75067 0.79103 1.18579 1.19877 1.17052 1.21148 0.99218 0.95057 0.97346 1.21301 0.99322 0.94585 0.98272 0.93702 0.90958 0.92497 0.90916 0.89511 0.85789 0.88092 0.89553 0.92160 0.93812 0.93787 0.92156 0.89548 0.95677 0.95705 0.76998 0.91626 0.83783 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.31 16 2 C -0.08 -1.24 6.07 29.85 0.18 -1.06 16 3 C -0.09 -1.96 5.13 -19.86 -0.10 -2.06 16 4 C -0.13 -3.29 9.70 22.27 0.22 -3.07 16 5 C -0.14 -4.38 8.98 22.27 0.20 -4.18 16 6 C -0.08 -2.15 4.76 -19.87 -0.09 -2.24 16 7 C -0.03 -0.78 0.61 -52.93 -0.03 -0.81 16 8 C -0.13 -3.40 8.11 71.98 0.58 -2.81 16 9 C -0.13 -3.39 8.11 71.98 0.58 -2.81 16 10 C 0.15 6.29 3.22 86.38 0.28 6.57 16 11 N -0.75 -34.77 4.95 -467.41 -2.32 -37.09 16 12 C 0.54 32.11 7.75 86.36 0.67 32.78 16 13 O -0.64 -44.29 15.02 -4.29 -0.06 -44.36 16 14 C -0.57 -33.03 9.54 24.83 0.24 -32.80 16 15 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 16 C 0.03 1.49 5.50 85.30 0.47 1.96 16 17 N -0.82 -51.63 11.83 21.84 0.26 -51.37 16 18 Si 1.00 41.49 29.56 68.60 2.03 43.52 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 22 C -0.11 -2.37 8.71 22.27 0.19 -2.18 16 23 C -0.12 -2.26 9.70 22.27 0.22 -2.04 16 24 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 28 H 0.09 1.03 8.09 -2.39 -0.02 1.01 16 29 H 0.12 2.93 8.06 -2.91 -0.02 2.90 16 30 H 0.10 3.64 5.90 -2.91 -0.02 3.63 16 31 H 0.09 1.67 7.39 -2.39 -0.02 1.65 16 32 H 0.06 1.60 6.86 -2.39 -0.02 1.58 16 33 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.60 6.86 -2.39 -0.02 1.58 16 36 H 0.09 1.67 7.39 -2.39 -0.02 1.65 16 37 H 0.02 1.15 7.51 -2.39 -0.02 1.14 16 38 H 0.02 1.14 7.51 -2.39 -0.02 1.12 16 39 H 0.39 15.65 6.14 -92.70 -0.57 15.08 16 40 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 41 H 0.14 2.35 7.10 -2.91 -0.02 2.33 16 42 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -78.08 340.28 4.65 -73.43 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.44 Total: 31.93 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 4.31 Total: -16.06 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -2.06 Total: -88.46 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.06 Total: -44.36 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -78.08 4.65 -73.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187769352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.059 kcal (2) G-P(sol) polarization free energy of solvation -78.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds