Wall clock time and date at job start Mon Mar 30 2020 02:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47431 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46988 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46708 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00166 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99842 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99731 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99809 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47428 * 90.00205 * 20 18 16 22 22 H 1.48509 * 109.46801 * 210.00213 * 20 18 16 23 23 H 1.48501 * 109.47249 * 329.99694 * 20 18 16 24 24 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 25 25 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 27 27 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 28 28 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 29 29 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 31 31 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 34 34 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 35 35 H 0.97005 * 120.00026 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.46938 * 299.99888 * 13 12 10 37 37 H 1.08995 * 109.47102 * 59.99828 * 13 12 10 38 38 H 1.09000 * 109.46569 * 299.99625 * 14 13 12 39 39 H 1.09000 * 109.47411 * 59.99137 * 14 13 12 40 40 H 1.09000 * 109.47199 * 299.99287 * 15 14 13 41 41 H 1.09000 * 109.47239 * 59.99977 * 15 14 13 42 42 H 0.97006 * 119.99697 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 4.0621 -0.8247 4.6177 14 6 3.7028 -1.5102 5.9375 15 6 4.9037 -2.3159 6.4370 16 6 4.5500 -2.9907 7.7373 17 1 3.5671 -2.8577 8.1649 18 6 5.4811 -3.7777 8.3812 19 7 5.1723 -4.3669 9.5157 20 14 7.1813 -4.0070 7.6421 21 1 8.0896 -2.9488 8.1521 22 1 7.7113 -5.3407 8.0241 23 1 7.0945 -3.9142 6.1625 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2578 1.5015 -2.1247 30 1 3.0694 3.8259 -2.1255 31 1 3.3047 5.0489 -0.0011 32 1 2.7284 3.9470 2.1240 33 1 1.5501 2.1866 3.2337 34 1 0.9680 0.7630 2.3376 35 1 2.0890 -0.0410 4.6522 36 1 4.3272 -1.5792 3.8771 37 1 4.9083 -0.1557 4.7739 38 1 3.4374 -0.7559 6.6782 39 1 2.8566 -2.1792 5.7809 40 1 5.1687 -3.0703 5.6962 41 1 5.7501 -1.6472 6.5936 42 1 5.8275 -4.9204 9.9688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188444818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:32 Heat of formation + Delta-G solvation = -43.124381 kcal Electronic energy + Delta-G solvation = -20370.638422 eV Core-core repulsion = 17314.294640 eV Total energy + Delta-G solvation = -3056.343782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32271 -38.87264 -35.53327 -34.47499 -33.32860 -32.71502 -31.41976 -29.69283 -28.29603 -26.61799 -24.04757 -23.04458 -22.05455 -20.92562 -20.60576 -19.74828 -17.11207 -16.68523 -16.57786 -16.29493 -15.63764 -15.20880 -15.03637 -14.20880 -14.04078 -13.99467 -13.77902 -13.52769 -13.23298 -13.03556 -12.70376 -12.40170 -12.21029 -11.96893 -11.94249 -11.80452 -11.46960 -11.09046 -10.97834 -10.89787 -10.84937 -10.20559 -9.97906 -9.79035 -9.59938 -9.24094 -8.90972 -8.85393 -8.69737 -8.56615 -6.07494 -4.06228 1.21013 1.28818 2.73418 3.29601 3.30752 3.38226 3.42572 3.73872 4.43524 4.45892 4.57863 4.73883 4.79880 4.96186 4.97556 5.05622 5.16969 5.22490 5.26689 5.33448 5.40583 5.47217 5.56833 5.64999 5.70183 5.73554 5.86293 5.96009 6.00799 6.05742 6.34752 6.35272 6.38001 6.43544 6.52940 6.69425 6.78614 6.88844 7.21621 7.35059 7.63535 7.75706 8.34689 8.49188 8.96270 9.54857 11.05751 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.002938 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.250916 B = 9526.544841 C = 9757.546835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.060 4.060 9 C -0.109 4.109 10 C 0.509 3.491 11 O -0.535 6.535 12 N -0.728 5.728 13 C 0.114 3.886 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.264 1.264 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 14.797 -20.283 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.061 4.061 9 C -0.148 4.148 10 C 0.294 3.706 11 O -0.411 6.411 12 N -0.380 5.380 13 C -0.008 4.008 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.491 14.647 -20.600 26.999 hybrid contribution 0.632 -0.167 0.095 0.661 sum -8.859 14.480 -20.505 26.620 Atomic orbital electron populations 1.21772 0.94657 1.01896 1.02095 1.20578 0.95970 0.92860 1.03285 1.19676 0.98312 0.95736 0.92634 1.20973 1.00215 0.95189 0.97326 1.21090 0.99895 0.94810 0.97993 1.21057 1.00795 0.99947 0.92560 1.20980 0.98680 0.94469 0.98185 1.19120 0.99852 0.93964 0.93133 1.20773 0.97841 1.00224 0.95992 1.20461 0.89391 0.79760 0.80951 1.90726 1.31261 1.62872 1.56258 1.46187 1.17549 1.50311 1.23910 1.21637 0.87763 0.94484 0.96953 1.21702 1.00965 0.99009 0.93410 1.19505 0.93339 0.95051 0.97027 1.21100 1.01202 1.28891 1.04827 0.91006 1.25029 0.98673 0.95137 0.94637 1.69914 1.35346 1.32417 1.16520 0.86777 0.84662 0.77525 0.80344 1.20237 1.21352 1.18903 0.92518 0.92192 0.92501 0.90973 0.90901 0.86259 0.86301 0.86228 0.86227 0.88101 0.87826 0.76681 0.91879 0.91882 0.92130 0.92099 0.96327 0.96772 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.72 37.16 0.36 -0.77 16 2 C -0.09 -0.88 5.38 -27.89 -0.15 -1.03 16 3 C -0.06 -0.71 5.13 -104.63 -0.54 -1.25 16 4 C -0.12 -1.22 9.68 -39.58 -0.38 -1.61 16 5 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 6 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 7 C -0.11 -1.14 9.68 -39.58 -0.38 -1.52 16 8 C -0.06 -0.69 4.37 -104.63 -0.46 -1.14 16 9 C -0.11 -1.08 5.16 -29.04 -0.15 -1.23 16 10 C 0.51 7.05 7.04 -10.99 -0.08 6.98 16 11 O -0.53 -9.73 16.03 5.55 0.09 -9.64 16 12 N -0.73 -9.64 5.56 -60.30 -0.33 -9.98 16 13 C 0.11 1.89 5.67 -4.04 -0.02 1.86 16 14 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 16 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 17 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 20 Si 0.88 21.77 27.47 -169.99 -4.67 17.11 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.41 6.83 -51.93 -0.35 0.06 16 27 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 28 H 0.07 0.82 6.41 -51.93 -0.33 0.48 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.10 0.84 5.63 -51.93 -0.29 0.54 16 35 H 0.40 4.12 8.47 -40.82 -0.35 3.77 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -33.66 345.76 -8.95 -42.61 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.74 Total: 0.37 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -3.28 Total: -18.71 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.44 Total: -36.94 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.66 -8.95 -42.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188444818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.516 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds