Wall clock time and date at job start Mon Mar 30 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47431 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46988 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46708 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00166 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99842 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99731 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99809 * 0.02562 * 18 16 15 21 21 H 1.48491 * 109.47428 * 90.00205 * 20 18 16 22 22 H 1.48509 * 109.46801 * 210.00213 * 20 18 16 23 23 H 1.48501 * 109.47249 * 329.99694 * 20 18 16 24 24 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 25 25 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 27 27 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 28 28 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 29 29 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 31 31 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 34 34 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 35 35 H 0.97005 * 120.00026 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.46938 * 299.99888 * 13 12 10 37 37 H 1.08995 * 109.47102 * 59.99828 * 13 12 10 38 38 H 1.09000 * 109.46569 * 299.99625 * 14 13 12 39 39 H 1.09000 * 109.47411 * 59.99137 * 14 13 12 40 40 H 1.09000 * 109.47199 * 299.99287 * 15 14 13 41 41 H 1.09000 * 109.47239 * 59.99977 * 15 14 13 42 42 H 0.97006 * 119.99697 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 4.0621 -0.8247 4.6177 14 6 3.7028 -1.5102 5.9375 15 6 4.9037 -2.3159 6.4370 16 6 4.5500 -2.9907 7.7373 17 1 3.5671 -2.8577 8.1649 18 6 5.4811 -3.7777 8.3812 19 7 5.1723 -4.3669 9.5157 20 14 7.1813 -4.0070 7.6421 21 1 8.0896 -2.9488 8.1521 22 1 7.7113 -5.3407 8.0241 23 1 7.0945 -3.9142 6.1625 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2578 1.5015 -2.1247 30 1 3.0694 3.8259 -2.1255 31 1 3.3047 5.0489 -0.0011 32 1 2.7284 3.9470 2.1240 33 1 1.5501 2.1866 3.2337 34 1 0.9680 0.7630 2.3376 35 1 2.0890 -0.0410 4.6522 36 1 4.3272 -1.5792 3.8771 37 1 4.9083 -0.1557 4.7739 38 1 3.4374 -0.7559 6.6782 39 1 2.8566 -2.1792 5.7809 40 1 5.1687 -3.0703 5.6962 41 1 5.7501 -1.6472 6.5936 42 1 5.8275 -4.9204 9.9688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188444818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:31 Heat of formation + Delta-G solvation = -63.448227 kcal Electronic energy + Delta-G solvation = -20371.519730 eV Core-core repulsion = 17314.294640 eV Total energy + Delta-G solvation = -3057.225090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24346 -39.83904 -36.97939 -35.19905 -35.13150 -33.68276 -33.08331 -30.41697 -29.54181 -27.96610 -24.87258 -24.50570 -22.94966 -22.23905 -21.70846 -20.89397 -18.98433 -17.95215 -17.46460 -17.17348 -16.74053 -16.42302 -16.21434 -15.81142 -15.31068 -14.86391 -14.79145 -14.60942 -14.33194 -13.99306 -13.84407 -13.79021 -13.71354 -13.00789 -12.83628 -12.73081 -12.66998 -12.64276 -12.16729 -11.91992 -11.78962 -11.68915 -11.59914 -11.54712 -11.33687 -10.91041 -10.76940 -10.06731 -9.67601 -9.46392 -8.30185 -6.33903 0.44194 0.53036 1.35980 1.37664 1.49346 1.66694 2.26430 2.35532 2.92837 3.05639 3.67569 3.86628 3.97780 4.04890 4.10652 4.17728 4.20038 4.31179 4.36075 4.49787 4.50530 4.54663 4.65474 4.73124 4.76502 4.88437 4.92172 5.03483 5.03972 5.08758 5.17911 5.24524 5.40111 5.40671 5.51302 5.55240 5.60740 5.64200 5.64687 5.76582 6.16318 6.26832 6.61097 6.74359 7.29566 7.31117 8.86233 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.002938 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.250916 B = 9526.544841 C = 9757.546835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.080 4.080 4 C -0.133 4.133 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.121 4.121 8 C -0.081 4.081 9 C -0.099 4.099 10 C 0.510 3.490 11 O -0.581 6.581 12 N -0.719 5.719 13 C 0.127 3.873 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.530 4.530 17 H 0.039 0.961 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.249 1.249 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.134 0.866 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.416 0.584 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 15.927 -21.858 29.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.080 4.080 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.154 4.154 7 C -0.139 4.139 8 C -0.081 4.081 9 C -0.138 4.138 10 C 0.298 3.702 11 O -0.461 6.461 12 N -0.371 5.371 13 C 0.003 3.997 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.173 1.173 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.253 0.747 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.727 15.793 -22.172 28.907 hybrid contribution 0.628 -0.492 0.591 0.993 sum -9.100 15.301 -21.581 27.976 Atomic orbital electron populations 1.21744 0.92991 1.02556 1.02623 1.20570 0.97397 0.92135 1.02457 1.19938 0.98639 0.96310 0.93076 1.21264 1.00248 0.95759 0.97803 1.21425 0.99219 0.94741 0.98969 1.21384 1.00542 1.00981 0.92468 1.21267 0.98776 0.94682 0.99126 1.19350 1.00615 0.94456 0.93693 1.20790 0.96359 1.00611 0.96082 1.21109 0.89816 0.79156 0.80164 1.90706 1.33364 1.64463 1.57535 1.46014 1.17327 1.49662 1.24104 1.21254 0.88638 0.94249 0.95517 1.21475 0.99040 0.98759 0.94463 1.19471 0.95479 0.95389 0.94721 1.21470 0.99864 1.28935 1.06556 0.94294 1.25971 1.03193 0.94973 0.95040 1.70056 1.37034 1.33708 1.18274 0.85713 0.79333 0.77699 0.80256 1.19261 1.20972 1.17276 0.92038 0.91437 0.91922 0.90948 0.92555 0.84857 0.84141 0.84307 0.85134 0.85407 0.85806 0.74746 0.92820 0.92766 0.91610 0.91603 0.96235 0.96370 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.72 71.98 0.70 -1.23 16 2 C -0.09 -1.65 5.38 29.85 0.16 -1.49 16 3 C -0.08 -1.69 5.13 -19.87 -0.10 -1.79 16 4 C -0.13 -2.58 9.68 22.27 0.22 -2.36 16 5 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 6 C -0.14 -2.50 10.05 22.27 0.22 -2.28 16 7 C -0.12 -2.45 9.68 22.27 0.22 -2.23 16 8 C -0.08 -1.73 4.37 -19.87 -0.09 -1.82 16 9 C -0.10 -1.77 5.16 29.10 0.15 -1.62 16 10 C 0.51 13.42 7.04 87.66 0.62 14.03 16 11 O -0.58 -20.87 16.03 -3.04 -0.05 -20.92 16 12 N -0.72 -17.76 5.56 -463.07 -2.57 -20.33 16 13 C 0.13 4.03 5.67 86.38 0.49 4.52 16 14 C -0.10 -3.55 5.27 30.59 0.16 -3.39 16 15 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 16 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 17 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 18 C 0.01 0.30 5.47 84.66 0.46 0.76 16 19 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 20 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.77 6.83 -2.39 -0.02 0.75 16 27 H 0.07 1.29 8.05 -2.38 -0.02 1.27 16 28 H 0.06 1.22 6.41 -2.39 -0.02 1.21 16 29 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 30 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.13 1.58 8.05 -2.39 -0.02 1.56 16 34 H 0.12 1.69 5.63 -2.38 -0.01 1.68 16 35 H 0.42 7.56 8.47 -92.70 -0.79 6.78 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 41 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 42 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -73.23 345.76 3.52 -69.71 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.16 Total: 15.33 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 3.80 Total: -31.17 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.27 Total: -79.36 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.92 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -73.23 3.52 -69.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188444818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.260 kcal (2) G-P(sol) polarization free energy of solvation -73.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds