Wall clock time and date at job start Mon Mar 30 2020 02:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99747 * 0.02562 * 12 10 9 14 14 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 15 15 H 1.08998 * 109.47234 * 359.97438 * 14 12 10 16 16 C 1.52995 * 109.47449 * 120.00082 * 14 12 10 17 17 C 1.50710 * 109.47040 * 240.00181 * 14 12 10 18 18 H 1.07999 * 120.00014 * 359.97438 * 17 14 12 19 19 C 1.37877 * 119.99795 * 179.97438 * 17 14 12 20 20 N 1.31507 * 120.00326 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 119.99694 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46929 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.46829 * 120.00131 * 21 19 17 24 24 H 1.48500 * 109.47120 * 240.00082 * 21 19 17 25 25 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 27 27 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 35 35 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 36 36 H 1.08997 * 109.47053 * 89.99943 * 13 12 10 37 37 H 1.09007 * 109.47053 * 209.99941 * 13 12 10 38 38 H 1.08993 * 109.46967 * 329.99605 * 13 12 10 39 39 H 1.09004 * 109.47217 * 59.99974 * 16 14 12 40 40 H 1.09003 * 109.47033 * 180.02562 * 16 14 12 41 41 H 1.09001 * 109.46836 * 300.00120 * 16 14 12 42 42 H 0.96997 * 120.00389 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 1.6690 -0.0346 4.9141 14 6 4.0621 -0.8247 4.6177 15 1 4.8882 -0.7195 3.9144 16 6 4.4905 -0.3024 5.9904 17 6 3.6806 -2.2784 4.7299 18 1 2.6814 -2.5960 4.4710 19 6 4.6074 -3.2027 5.1632 20 7 5.8240 -2.8159 5.4790 21 14 4.1344 -5.0045 5.3030 22 1 2.7176 -5.1775 4.8931 23 1 5.0088 -5.8158 4.4185 24 1 4.3006 -5.4522 6.7091 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.5501 2.1866 3.2337 35 1 0.9680 0.7630 2.3376 36 1 1.0253 -0.8517 4.5886 37 1 1.8993 -0.1531 5.9730 38 1 1.1578 0.9152 4.7576 39 1 3.6643 -0.4080 6.6934 40 1 5.3465 -0.8758 6.3463 41 1 4.7664 0.7490 5.9091 42 1 6.4758 -3.4661 5.7841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188545354.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:55 Heat of formation + Delta-G solvation = -40.800873 kcal Electronic energy + Delta-G solvation = -21692.198628 eV Core-core repulsion = 18635.955601 eV Total energy + Delta-G solvation = -3056.243027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22707 -39.84590 -37.09088 -35.20503 -34.80153 -33.47158 -31.41103 -30.32329 -28.36617 -27.54397 -27.25380 -24.73152 -23.57709 -22.49951 -21.36417 -19.83937 -18.51781 -17.89517 -17.33123 -17.07162 -16.93072 -16.14654 -15.86692 -15.70560 -14.80845 -14.62757 -14.43365 -14.28701 -14.08375 -13.88333 -13.80841 -13.45687 -13.15011 -12.96330 -12.88153 -12.82711 -12.65615 -12.62961 -12.56037 -12.18510 -12.12660 -12.09665 -11.66907 -11.52847 -11.16297 -10.69482 -10.48778 -9.64377 -9.42494 -9.29480 -8.14470 -6.31110 0.48012 0.55354 1.39907 1.41546 1.52895 1.85791 2.33695 2.51081 2.95596 3.13342 3.72302 3.87825 3.97425 4.05353 4.12244 4.32098 4.36024 4.42490 4.51903 4.55984 4.67036 4.70602 4.74692 4.78412 4.81797 4.88252 5.03559 5.04777 5.08182 5.09867 5.18478 5.26946 5.39785 5.47165 5.61999 5.64243 5.65464 5.69012 5.80947 6.05032 6.16932 6.19417 6.77621 6.87525 7.34076 7.52999 8.90003 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022678 B = 0.004834 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.364286 B = 5791.180958 C = 6189.133197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.080 4.080 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.122 4.122 8 C -0.078 4.078 9 C -0.092 4.092 10 C 0.499 3.501 11 O -0.598 6.598 12 N -0.603 5.603 13 C 0.081 3.919 14 C 0.261 3.739 15 H 0.005 0.995 16 C -0.132 4.132 17 C -0.535 4.535 18 H 0.060 0.940 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.964 3.036 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.135 0.865 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.370 10.861 -7.944 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 C -0.080 4.080 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.140 4.140 8 C -0.079 4.079 9 C -0.132 4.132 10 C 0.288 3.712 11 O -0.480 6.480 12 N -0.334 5.334 13 C -0.062 4.062 14 C 0.159 3.841 15 H 0.023 0.977 16 C -0.191 4.191 17 C -0.573 4.573 18 H 0.078 0.922 19 C -0.186 4.186 20 N -0.558 5.558 21 Si 0.790 3.210 22 H -0.188 1.188 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.153 0.847 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.691 10.766 -8.169 18.539 hybrid contribution 0.585 -1.187 0.293 1.355 sum -12.106 9.579 -7.876 17.331 Atomic orbital electron populations 1.21708 0.92524 1.02479 1.02718 1.20561 0.97829 0.92442 1.01935 1.19907 0.98867 0.96004 0.93269 1.21254 1.00298 0.95894 0.97545 1.21425 0.99232 0.94564 0.99044 1.21381 1.00414 1.01048 0.92258 1.21244 0.98948 0.94539 0.99262 1.19383 1.00386 0.94532 0.93568 1.20779 0.96266 1.00121 0.96005 1.21173 0.89746 0.79833 0.80461 1.90638 1.34053 1.65694 1.57609 1.48255 1.15583 1.47169 1.22422 1.21843 0.84943 1.02536 0.96834 1.18500 0.84168 0.89560 0.91853 0.97711 1.21874 1.01822 0.97046 0.98343 1.21604 0.98386 0.92591 1.44733 0.92152 1.25749 0.94705 1.03375 0.94758 1.70032 1.04753 1.35609 1.45433 0.85412 0.78485 0.79316 0.77835 1.18786 1.21253 1.19939 0.91603 0.92044 0.91428 0.91039 0.93746 0.84713 0.83690 0.83908 0.85298 0.85776 0.86592 0.92626 0.91112 0.88552 0.93187 0.91535 0.96233 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.72 71.98 0.70 -2.15 16 2 C -0.09 -2.54 5.38 29.85 0.16 -2.38 16 3 C -0.08 -2.37 5.13 -19.87 -0.10 -2.48 16 4 C -0.13 -3.40 9.68 22.27 0.22 -3.19 16 5 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 6 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 7 C -0.12 -3.35 9.68 22.27 0.22 -3.13 16 8 C -0.08 -2.37 4.37 -19.87 -0.09 -2.46 16 9 C -0.09 -2.70 3.71 29.10 0.11 -2.59 16 10 C 0.50 20.91 6.89 87.66 0.60 21.52 16 11 O -0.60 -31.45 15.36 -3.04 -0.05 -31.49 16 12 N -0.60 -25.75 2.75 -826.78 -2.28 -28.03 16 13 C 0.08 2.50 9.48 127.77 1.21 3.71 16 14 C 0.26 13.88 2.64 44.25 0.12 14.00 16 15 H 0.00 0.31 6.90 -2.39 -0.02 0.30 16 16 C -0.13 -6.49 8.95 71.98 0.64 -5.85 16 17 C -0.53 -29.44 8.37 25.60 0.21 -29.23 16 18 H 0.06 3.23 7.65 -2.91 -0.02 3.20 16 19 C 0.01 0.74 5.30 84.66 0.45 1.19 16 20 N -0.92 -53.85 11.32 21.45 0.24 -53.60 16 21 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.19 6.83 -2.39 -0.02 1.18 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.91 8.05 -2.38 -0.02 1.89 16 29 H 0.04 1.53 6.41 -2.39 -0.02 1.52 16 30 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 32 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.12 2.79 7.31 -2.39 -0.02 2.77 16 35 H 0.12 2.93 5.60 -2.38 -0.01 2.92 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 2.22 6.43 -2.38 -0.02 2.21 16 38 H 0.10 2.11 6.44 -2.39 -0.02 2.09 16 39 H 0.05 2.20 6.66 -2.38 -0.02 2.18 16 40 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -72.72 337.16 5.84 -66.87 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 1.00 Total: 19.40 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 4.90 Total: -18.65 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.03 Total: -81.63 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.05 Total: -31.49 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -72.72 5.84 -66.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188545354.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -72.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds