Wall clock time and date at job start Mon Mar 30 2020 02:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99747 * 0.02562 * 12 10 9 14 14 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 15 15 H 1.08998 * 109.47234 * 359.97438 * 14 12 10 16 16 C 1.53005 * 109.47182 * 239.99979 * 14 12 10 17 17 C 1.50700 * 109.47366 * 120.00205 * 14 12 10 18 18 H 1.07996 * 120.00075 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99688 * 180.02562 * 17 14 12 20 20 N 1.31511 * 120.00111 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99617 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47165 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46937 * 120.00025 * 21 19 17 24 24 H 1.48498 * 109.47191 * 240.00005 * 21 19 17 25 25 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 26 26 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 35 35 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 36 36 H 1.08997 * 109.47053 * 89.99943 * 13 12 10 37 37 H 1.09007 * 109.47053 * 209.99941 * 13 12 10 38 38 H 1.08993 * 109.46967 * 329.99605 * 13 12 10 39 39 H 1.09010 * 109.46891 * 59.99427 * 16 14 12 40 40 H 1.08993 * 109.47452 * 179.97438 * 16 14 12 41 41 H 1.09000 * 109.47439 * 300.00155 * 16 14 12 42 42 H 0.97010 * 119.99590 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 1.6690 -0.0346 4.9141 14 6 4.0621 -0.8247 4.6177 15 1 4.8882 -0.7195 3.9144 16 6 3.6748 -2.3005 4.7317 17 6 4.4841 -0.3102 5.9698 18 1 3.9494 0.5094 6.4267 19 6 5.5535 -0.8853 6.6231 20 7 6.2048 -1.8830 6.0665 21 14 6.0770 -0.2471 8.2988 22 1 5.1880 0.8720 8.7022 23 1 5.9790 -1.3413 9.2979 24 1 7.4798 0.2350 8.2288 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.5501 2.1866 3.2337 35 1 0.9680 0.7630 2.3376 36 1 1.0253 -0.8517 4.5886 37 1 1.8993 -0.1531 5.9730 38 1 1.1578 0.9152 4.7576 39 1 3.3695 -2.6726 3.7536 40 1 4.5306 -2.8742 5.0874 41 1 2.8486 -2.4061 5.4347 42 1 6.9574 -2.2873 6.5260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188545379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:00 Heat of formation + Delta-G solvation = -23.974420 kcal Electronic energy + Delta-G solvation = -21652.423475 eV Core-core repulsion = 18596.910098 eV Total energy + Delta-G solvation = -3055.513377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.92245 -38.44981 -35.28362 -34.17555 -32.94639 -32.19445 -29.66533 -29.27319 -27.12983 -25.99015 -25.20191 -23.75507 -22.20483 -21.10469 -20.16454 -18.23014 -16.60094 -16.34406 -16.12926 -15.84011 -15.20888 -14.87248 -14.30869 -14.19706 -13.70459 -13.44756 -13.06152 -12.91549 -12.77162 -12.44531 -12.41987 -11.99410 -11.70919 -11.66828 -11.54139 -11.47758 -11.14577 -11.04603 -10.82368 -10.73470 -10.59340 -10.53172 -10.22427 -10.16251 -9.17933 -8.97947 -8.58213 -8.42844 -8.32746 -7.54995 -6.06455 -4.14334 1.53829 1.59087 3.26010 3.33794 3.36317 3.44888 3.81765 4.16877 4.41674 4.83229 4.89374 5.06392 5.11553 5.23466 5.24452 5.33811 5.38316 5.45456 5.56192 5.63365 5.71269 5.75625 5.83303 5.95449 6.01378 6.04673 6.15277 6.27081 6.35281 6.37822 6.65183 6.66933 6.76904 6.85036 6.86818 7.08510 7.19639 7.45817 7.56413 7.73417 8.03811 8.21889 8.56675 8.85420 9.11393 9.52337 10.98857 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.004644 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.313803 B = 6028.150700 C = 6483.945003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.051 4.051 9 C -0.108 4.108 10 C 0.506 3.494 11 O -0.543 6.543 12 N -0.595 5.595 13 C 0.083 3.917 14 C 0.258 3.742 15 H 0.062 0.938 16 C -0.145 4.145 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.887 5.887 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.010 0.990 40 H 0.092 0.908 41 H 0.029 0.971 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.550 6.440 -9.912 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.064 4.064 4 C -0.138 4.138 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.052 4.052 9 C -0.148 4.148 10 C 0.292 3.708 11 O -0.421 6.421 12 N -0.327 5.327 13 C -0.061 4.061 14 C 0.157 3.843 15 H 0.080 0.920 16 C -0.204 4.204 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.029 0.971 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.841 6.278 -10.186 16.834 hybrid contribution 0.358 0.329 1.080 1.185 sum -11.483 6.607 -9.106 16.076 Atomic orbital electron populations 1.21758 0.94919 1.01633 1.01927 1.20565 0.95730 0.93037 1.03340 1.19651 0.98530 0.95652 0.92617 1.20930 1.00492 0.95162 0.97215 1.21027 1.00509 0.94889 0.97830 1.21020 1.00934 0.99838 0.92598 1.20983 0.98715 0.94619 0.98078 1.19221 0.98801 0.93765 0.93403 1.20836 0.98599 1.00068 0.95322 1.20211 0.88819 0.80321 0.81451 1.90675 1.31285 1.63604 1.56578 1.48245 1.15139 1.48255 1.21061 1.21606 0.86393 0.99659 0.98477 1.18921 0.83101 0.86993 0.95243 0.91974 1.22075 1.01821 0.99494 0.96977 1.21362 1.14827 1.17474 1.02672 0.92233 1.24898 0.95982 0.94897 0.98042 1.69896 1.20818 1.23637 1.38218 0.86450 0.78590 0.78726 0.83682 1.19826 1.20942 1.20920 0.92698 0.92403 0.92539 0.91160 0.90641 0.86469 0.86532 0.86428 0.86313 0.88735 0.88500 0.93939 0.90109 0.92863 0.97104 0.88914 0.95205 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.72 37.16 0.36 -1.15 16 2 C -0.09 -1.19 5.38 -27.89 -0.15 -1.34 16 3 C -0.06 -0.95 5.13 -104.63 -0.54 -1.49 16 4 C -0.12 -1.60 9.68 -39.58 -0.38 -1.98 16 5 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 6 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 7 C -0.11 -1.56 9.68 -39.58 -0.38 -1.95 16 8 C -0.05 -0.80 4.37 -104.63 -0.46 -1.26 16 9 C -0.11 -1.66 3.71 -29.04 -0.11 -1.77 16 10 C 0.51 10.50 6.89 -10.99 -0.08 10.43 16 11 O -0.54 -13.67 15.36 5.55 0.09 -13.58 16 12 N -0.60 -12.69 2.75 -175.26 -0.48 -13.17 16 13 C 0.08 1.37 9.24 59.85 0.55 1.92 16 14 C 0.26 6.63 2.64 -69.08 -0.18 6.45 16 15 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 16 C -0.15 -3.50 8.97 37.16 0.33 -3.16 16 17 C -0.52 -14.23 7.99 -34.44 -0.28 -14.51 16 18 H 0.06 1.59 7.33 -52.49 -0.38 1.20 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.57 6.83 -51.93 -0.35 0.22 16 28 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 29 H 0.07 1.17 6.41 -51.93 -0.33 0.84 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.09 1.26 7.31 -51.93 -0.38 0.88 16 35 H 0.10 1.27 5.60 -51.93 -0.29 0.98 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 38 H 0.05 0.71 6.44 -51.93 -0.33 0.37 16 39 H 0.01 0.23 8.14 -51.92 -0.42 -0.20 16 40 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 41 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -31.94 337.84 -8.34 -40.28 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.45 Total: 2.15 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.19 Total: -12.18 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.15 Total: -37.84 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.94 -8.34 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188545379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.307 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds