Wall clock time and date at job start Mon Mar 30 2020 02:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99747 * 0.02562 * 12 10 9 14 14 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 15 15 H 1.08998 * 109.47234 * 359.97438 * 14 12 10 16 16 C 1.53005 * 109.47182 * 239.99979 * 14 12 10 17 17 C 1.50700 * 109.47366 * 120.00205 * 14 12 10 18 18 H 1.07996 * 120.00075 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99688 * 180.02562 * 17 14 12 20 20 N 1.31511 * 120.00111 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99617 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47165 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46937 * 120.00025 * 21 19 17 24 24 H 1.48498 * 109.47191 * 240.00005 * 21 19 17 25 25 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 26 26 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 35 35 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 36 36 H 1.08997 * 109.47053 * 89.99943 * 13 12 10 37 37 H 1.09007 * 109.47053 * 209.99941 * 13 12 10 38 38 H 1.08993 * 109.46967 * 329.99605 * 13 12 10 39 39 H 1.09010 * 109.46891 * 59.99427 * 16 14 12 40 40 H 1.08993 * 109.47452 * 179.97438 * 16 14 12 41 41 H 1.09000 * 109.47439 * 300.00155 * 16 14 12 42 42 H 0.97010 * 119.99590 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 1.6690 -0.0346 4.9141 14 6 4.0621 -0.8247 4.6177 15 1 4.8882 -0.7195 3.9144 16 6 3.6748 -2.3005 4.7317 17 6 4.4841 -0.3102 5.9698 18 1 3.9494 0.5094 6.4267 19 6 5.5535 -0.8853 6.6231 20 7 6.2048 -1.8830 6.0665 21 14 6.0770 -0.2471 8.2988 22 1 5.1880 0.8720 8.7022 23 1 5.9790 -1.3413 9.2979 24 1 7.4798 0.2350 8.2288 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.5501 2.1866 3.2337 35 1 0.9680 0.7630 2.3376 36 1 1.0253 -0.8517 4.5886 37 1 1.8993 -0.1531 5.9730 38 1 1.1578 0.9152 4.7576 39 1 3.3695 -2.6726 3.7536 40 1 4.5306 -2.8742 5.0874 41 1 2.8486 -2.4061 5.4347 42 1 6.9574 -2.2873 6.5260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188545379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:59 Heat of formation + Delta-G solvation = -41.550499 kcal Electronic energy + Delta-G solvation = -21653.185631 eV Core-core repulsion = 18596.910098 eV Total energy + Delta-G solvation = -3056.275533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22849 -39.84547 -37.08624 -35.20387 -34.79823 -33.47156 -31.41414 -30.32116 -28.37671 -27.47715 -27.29112 -24.72646 -23.57564 -22.51450 -21.36639 -19.84445 -18.52320 -17.88547 -17.36390 -17.05767 -16.92891 -16.11683 -15.85297 -15.72649 -14.80449 -14.63101 -14.39429 -14.26396 -14.00935 -13.92925 -13.77367 -13.49988 -13.10778 -13.04339 -12.82143 -12.81236 -12.66253 -12.65315 -12.58328 -12.20482 -12.12110 -12.09427 -11.65737 -11.52886 -11.17904 -10.69578 -10.48610 -9.64862 -9.42800 -9.29282 -8.14844 -6.31467 0.47654 0.54873 1.40126 1.41821 1.53137 1.85665 2.33442 2.51088 2.95262 3.13132 3.72149 3.88254 3.97273 4.05939 4.12245 4.32112 4.35576 4.42989 4.52921 4.57868 4.66840 4.74723 4.75634 4.77303 4.79956 4.89642 5.04415 5.05247 5.08482 5.10113 5.19320 5.26704 5.41261 5.48298 5.60382 5.63680 5.65179 5.68250 5.80164 6.05380 6.17047 6.19098 6.77387 6.87366 7.33676 7.52829 8.89718 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.004644 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.313803 B = 6028.150700 C = 6483.945003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 C -0.080 4.080 4 C -0.131 4.131 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.125 4.125 8 C -0.078 4.078 9 C -0.092 4.092 10 C 0.499 3.501 11 O -0.598 6.598 12 N -0.603 5.603 13 C 0.077 3.923 14 C 0.262 3.738 15 H 0.005 0.995 16 C -0.130 4.130 17 C -0.537 4.537 18 H 0.062 0.938 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.965 3.035 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.286 1.286 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.018 0.982 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.601 7.697 -9.870 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 C -0.081 4.081 4 C -0.149 4.149 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.143 4.143 8 C -0.078 4.078 9 C -0.131 4.131 10 C 0.288 3.712 11 O -0.480 6.480 12 N -0.334 5.334 13 C -0.065 4.065 14 C 0.160 3.840 15 H 0.023 0.977 16 C -0.189 4.189 17 C -0.575 4.575 18 H 0.080 0.920 19 C -0.186 4.186 20 N -0.558 5.558 21 Si 0.791 3.209 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.213 1.213 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.037 0.963 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.947 7.542 -10.132 18.816 hybrid contribution 1.024 -0.049 0.975 1.415 sum -12.922 7.494 -9.156 17.521 Atomic orbital electron populations 1.21720 0.92537 1.02607 1.02670 1.20561 0.97779 0.92151 1.02095 1.19931 0.98825 0.96241 0.93056 1.21268 1.00167 0.95781 0.97642 1.21427 0.99257 0.94693 0.98902 1.21366 1.00474 1.01019 0.92327 1.21239 0.99113 0.94787 0.99130 1.19379 1.00341 0.94416 0.93695 1.20773 0.96381 1.00116 0.95861 1.21168 0.89705 0.79778 0.80564 1.90638 1.33910 1.65374 1.58073 1.48257 1.15478 1.47776 1.21887 1.21879 0.84694 1.02806 0.97096 1.18494 0.83571 0.88593 0.93383 0.97737 1.21851 1.01202 0.98134 0.97676 1.21622 1.15179 1.17543 1.03164 0.91994 1.25759 0.95987 0.95058 1.01802 1.70042 1.21220 1.24749 1.39785 0.85397 0.77818 0.78526 0.79207 1.18754 1.19937 1.21269 0.91581 0.91295 0.92137 0.90790 0.93488 0.84452 0.83671 0.84137 0.85793 0.86359 0.86100 0.91551 0.91306 0.89080 0.96322 0.91589 0.93383 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.72 71.98 0.70 -1.90 16 2 C -0.09 -2.29 5.38 29.85 0.16 -2.13 16 3 C -0.08 -2.30 5.13 -19.87 -0.10 -2.41 16 4 C -0.13 -3.29 9.68 22.27 0.22 -3.07 16 5 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 6 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 7 C -0.12 -3.57 9.68 22.27 0.22 -3.36 16 8 C -0.08 -2.37 4.37 -19.87 -0.09 -2.46 16 9 C -0.09 -2.70 3.71 29.10 0.11 -2.59 16 10 C 0.50 20.94 6.89 87.66 0.60 21.54 16 11 O -0.60 -31.47 15.36 -3.04 -0.05 -31.51 16 12 N -0.60 -25.75 2.75 -826.78 -2.28 -28.02 16 13 C 0.08 2.40 9.24 127.77 1.18 3.58 16 14 C 0.26 13.91 2.64 44.25 0.12 14.02 16 15 H 0.00 0.30 6.90 -2.39 -0.02 0.28 16 16 C -0.13 -6.39 8.97 71.98 0.65 -5.75 16 17 C -0.54 -29.52 7.99 25.60 0.20 -29.31 16 18 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 19 C 0.01 0.73 5.30 84.66 0.45 1.18 16 20 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 21 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.08 6.83 -2.39 -0.02 1.06 16 28 H 0.07 1.79 8.05 -2.38 -0.02 1.77 16 29 H 0.05 1.47 6.41 -2.39 -0.02 1.46 16 30 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 32 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.12 2.85 7.31 -2.39 -0.02 2.83 16 35 H 0.12 2.90 5.60 -2.38 -0.01 2.89 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 2.31 7.02 -2.38 -0.02 2.29 16 38 H 0.09 2.11 6.44 -2.39 -0.02 2.10 16 39 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 41 H 0.05 2.12 7.67 -2.39 -0.02 2.11 16 42 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -72.60 337.84 5.80 -66.80 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.99 Total: 19.29 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 4.86 Total: -18.41 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -2.03 Total: -81.61 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.05 Total: -31.51 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -72.60 5.80 -66.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188545379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.248 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds