Wall clock time and date at job start Mon Mar 30 2020 02:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46740 * 324.99528 * 13 12 10 15 15 C 1.50700 * 109.47079 * 205.00110 * 13 12 10 16 16 H 1.08004 * 120.00298 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99893 * 179.97438 * 15 13 12 18 18 N 1.31516 * 120.00400 * 179.97438 * 17 15 13 19 19 Si 1.86801 * 120.00220 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47179 * 89.99723 * 19 17 15 21 21 H 1.48494 * 109.47463 * 209.99695 * 19 17 15 22 22 H 1.48501 * 109.46905 * 329.99968 * 19 17 15 23 23 C 1.52996 * 109.47435 * 85.00094 * 13 12 10 24 24 C 1.53008 * 109.46702 * 295.00003 * 23 13 12 25 25 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 26 26 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 27 27 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 35 35 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 36 36 H 0.97005 * 120.00026 * 0.02562 * 12 10 9 37 37 H 0.96999 * 120.00380 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.47150 * 54.99935 * 23 13 12 39 39 H 1.08998 * 109.47248 * 175.00782 * 23 13 12 40 40 H 1.08995 * 109.47263 * 299.99863 * 24 23 13 41 41 H 1.08998 * 109.46633 * 60.00402 * 24 23 13 42 42 H 1.08997 * 109.46920 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 4.0621 -0.8247 4.6177 14 1 4.5980 -1.2442 3.7662 15 6 3.5824 -1.9412 5.5089 16 1 2.5264 -2.0644 5.6994 17 6 4.4915 -2.8060 6.0804 18 7 4.0730 -3.7801 6.8586 19 14 6.3178 -2.5933 5.7505 20 1 6.9046 -1.6935 6.7758 21 1 6.9891 -3.9165 5.8107 22 1 6.5116 -2.0008 4.4027 23 6 4.9977 0.0924 5.4078 24 6 5.5824 1.1527 4.4722 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.5501 2.1866 3.2337 35 1 0.9680 0.7630 2.3376 36 1 2.0890 -0.0410 4.6522 37 1 4.7126 -4.3883 7.2610 38 1 4.4391 0.5806 6.2062 39 1 5.8066 -0.4978 5.8385 40 1 6.1410 0.6644 3.6738 41 1 4.7735 1.7428 4.0415 42 1 6.2486 1.8063 5.0352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188801454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:12 Heat of formation + Delta-G solvation = -28.446713 kcal Electronic energy + Delta-G solvation = -21686.481442 eV Core-core repulsion = 18630.774131 eV Total energy + Delta-G solvation = -3055.707311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01909 -38.61050 -35.33674 -34.20956 -32.58332 -32.25220 -31.36339 -29.44723 -28.01913 -26.81756 -23.80507 -22.76358 -22.06499 -20.99444 -20.13202 -19.50406 -17.28682 -16.38940 -16.00872 -15.85723 -15.59371 -15.03445 -14.46897 -14.19229 -13.76249 -13.51007 -13.37419 -13.08256 -12.93315 -12.77920 -12.56847 -12.05863 -11.98963 -11.83324 -11.70127 -11.50953 -11.21451 -11.06584 -10.87967 -10.72502 -10.60771 -10.58818 -9.91724 -9.54834 -9.23297 -9.12908 -8.75001 -8.66908 -8.43697 -8.02578 -6.20979 -4.23198 1.45307 1.50816 3.23307 3.29883 3.35658 3.41214 3.74689 4.20666 4.32024 4.75954 4.82184 4.99376 5.04034 5.12858 5.19022 5.32156 5.39084 5.49304 5.53999 5.59647 5.66932 5.71780 5.92644 5.98392 5.98968 6.04060 6.09238 6.18843 6.22236 6.31182 6.57416 6.58433 6.67180 6.71704 6.78699 6.86752 6.98059 7.11442 7.29465 7.33291 7.53973 8.17581 8.55864 8.76955 9.00235 9.40564 10.91102 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024606 B = 0.004904 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.655600 B = 5708.263010 C = 6245.073413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.062 4.062 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.127 4.127 7 C -0.106 4.106 8 C -0.052 4.052 9 C -0.112 4.112 10 C 0.504 3.496 11 O -0.540 6.540 12 N -0.704 5.704 13 C 0.243 3.757 14 H 0.048 0.952 15 C -0.534 4.534 16 H 0.080 0.920 17 C 0.079 3.921 18 N -0.893 5.893 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.260 1.260 23 C -0.138 4.138 24 C -0.143 4.143 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.394 0.606 37 H 0.267 0.733 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 12.837 -12.118 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.062 4.062 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.145 4.145 7 C -0.124 4.124 8 C -0.052 4.052 9 C -0.152 4.152 10 C 0.289 3.711 11 O -0.418 6.418 12 N -0.352 5.352 13 C 0.140 3.860 14 H 0.066 0.934 15 C -0.572 4.572 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.530 5.530 19 Si 0.712 3.288 20 H -0.203 1.203 21 H -0.222 1.222 22 H -0.185 1.185 23 C -0.177 4.177 24 C -0.200 4.200 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.227 0.773 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.460 12.636 -12.448 18.559 hybrid contribution 0.701 0.058 0.327 0.776 sum -4.760 12.694 -12.121 18.185 Atomic orbital electron populations 1.21759 0.94824 1.01816 1.01892 1.20587 0.95841 0.92904 1.03488 1.19675 0.98236 0.95714 0.92587 1.20950 1.00391 0.95150 0.97293 1.21038 1.00394 0.94876 0.97852 1.21015 1.01042 0.99809 0.92618 1.20959 0.98882 0.94574 0.98020 1.19165 0.99011 0.93747 0.93318 1.20818 0.98569 1.00191 0.95603 1.20250 0.88943 0.80266 0.81621 1.90692 1.31044 1.63357 1.56730 1.46177 1.17533 1.48777 1.22720 1.19116 0.83644 0.88795 0.94484 0.93425 1.21063 0.95881 1.11135 1.29147 0.90217 1.24828 0.98919 0.94569 0.94153 1.69867 1.35034 1.16830 1.31243 0.86914 0.85462 0.76472 0.79951 1.20268 1.22194 1.18479 1.22284 0.99208 0.97535 0.98659 1.21866 1.00238 0.98737 0.99164 0.92509 0.92745 0.92247 0.91145 0.90452 0.86438 0.86530 0.86464 0.86385 0.88635 0.88164 0.77300 0.92309 0.92365 0.92880 0.92928 0.92903 0.95102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.72 37.16 0.36 -1.14 16 2 C -0.09 -1.16 5.38 -27.89 -0.15 -1.31 16 3 C -0.06 -0.85 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.50 9.68 -39.58 -0.38 -1.88 16 5 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 6 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 7 C -0.11 -1.40 9.68 -39.58 -0.38 -1.79 16 8 C -0.05 -0.73 4.37 -104.63 -0.46 -1.19 16 9 C -0.11 -1.51 5.16 -29.04 -0.15 -1.66 16 10 C 0.50 9.13 5.61 -10.99 -0.06 9.07 16 11 O -0.54 -11.68 13.17 5.55 0.07 -11.61 16 12 N -0.70 -13.54 5.02 -54.94 -0.28 -13.81 16 13 C 0.24 5.71 1.83 -69.09 -0.13 5.59 16 14 H 0.05 1.25 6.63 -51.93 -0.34 0.91 16 15 C -0.53 -14.31 9.31 -34.44 -0.32 -14.64 16 16 H 0.08 2.24 7.98 -52.48 -0.42 1.82 16 17 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 18 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 19 Si 0.88 21.86 24.41 -169.99 -4.15 17.71 16 20 H -0.28 -6.63 6.83 56.52 0.39 -6.25 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 23 C -0.14 -3.08 5.11 -26.73 -0.14 -3.21 16 24 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 25 H 0.06 0.56 6.83 -51.93 -0.35 0.21 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.08 1.15 6.41 -51.93 -0.33 0.82 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 35 H 0.10 1.19 5.63 -51.93 -0.29 0.90 16 36 H 0.39 6.64 8.54 -40.82 -0.35 6.30 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 40 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 41 H 0.05 1.05 5.65 -51.93 -0.29 0.75 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 330.03 15.07 4.97 4.97 Total: -1.00 -31.46 330.03 -7.89 -39.35 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.36 Total: 6.81 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.92 Total: -17.80 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.50 Total: -39.43 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.07 Total: -11.61 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.71 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.46 -7.89 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188801454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.905 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds