Wall clock time and date at job start Mon Mar 30 2020 02:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46740 * 324.99528 * 13 12 10 15 15 C 1.50700 * 109.47079 * 205.00110 * 13 12 10 16 16 H 1.08004 * 120.00298 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99893 * 179.97438 * 15 13 12 18 18 N 1.31516 * 120.00400 * 179.97438 * 17 15 13 19 19 Si 1.86801 * 120.00220 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47179 * 89.99723 * 19 17 15 21 21 H 1.48494 * 109.47463 * 209.99695 * 19 17 15 22 22 H 1.48501 * 109.46905 * 329.99968 * 19 17 15 23 23 C 1.52996 * 109.47435 * 85.00094 * 13 12 10 24 24 C 1.53008 * 109.46702 * 295.00003 * 23 13 12 25 25 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 26 26 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 27 27 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 35 35 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 36 36 H 0.97005 * 120.00026 * 0.02562 * 12 10 9 37 37 H 0.96999 * 120.00380 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.47150 * 54.99935 * 23 13 12 39 39 H 1.08998 * 109.47248 * 175.00782 * 23 13 12 40 40 H 1.08995 * 109.47263 * 299.99863 * 24 23 13 41 41 H 1.08998 * 109.46633 * 60.00402 * 24 23 13 42 42 H 1.08997 * 109.46920 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 4.0621 -0.8247 4.6177 14 1 4.5980 -1.2442 3.7662 15 6 3.5824 -1.9412 5.5089 16 1 2.5264 -2.0644 5.6994 17 6 4.4915 -2.8060 6.0804 18 7 4.0730 -3.7801 6.8586 19 14 6.3178 -2.5933 5.7505 20 1 6.9046 -1.6935 6.7758 21 1 6.9891 -3.9165 5.8107 22 1 6.5116 -2.0008 4.4027 23 6 4.9977 0.0924 5.4078 24 6 5.5824 1.1527 4.4722 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.5501 2.1866 3.2337 35 1 0.9680 0.7630 2.3376 36 1 2.0890 -0.0410 4.6522 37 1 4.7126 -4.3883 7.2610 38 1 4.4391 0.5806 6.2062 39 1 5.8066 -0.4978 5.8385 40 1 6.1410 0.6644 3.6738 41 1 4.7735 1.7428 4.0415 42 1 6.2486 1.8063 5.0352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188801454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:11 Heat of formation + Delta-G solvation = -47.577642 kcal Electronic energy + Delta-G solvation = -21687.311021 eV Core-core repulsion = 18630.774131 eV Total energy + Delta-G solvation = -3056.536890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23279 -39.89777 -37.07162 -35.16361 -34.37926 -33.70671 -32.86001 -30.36684 -29.64771 -28.18798 -24.78986 -24.55273 -23.24989 -22.32899 -21.40438 -21.00611 -19.10042 -17.71840 -17.47926 -17.13978 -17.00670 -16.22056 -15.92689 -15.75342 -15.07202 -14.84585 -14.59747 -14.36224 -14.16889 -13.98797 -13.90808 -13.72405 -13.57900 -13.06116 -12.88970 -12.77240 -12.70361 -12.62436 -12.38559 -12.12812 -11.86090 -11.66459 -11.52045 -11.38353 -11.22703 -10.86308 -10.66154 -9.71505 -9.63220 -9.42043 -8.38481 -6.43234 0.49002 0.56603 1.25187 1.33653 1.43367 1.86738 2.25090 2.52355 2.97428 3.01125 3.74136 3.89514 4.04300 4.13614 4.16815 4.24810 4.32551 4.33219 4.39324 4.48127 4.53149 4.57456 4.68250 4.75397 4.79740 4.85642 5.00273 5.05052 5.10529 5.12686 5.19620 5.24063 5.28163 5.40612 5.42660 5.52314 5.64218 5.66792 5.71232 5.81775 6.15835 6.20463 6.59296 6.95701 7.20775 7.55446 8.76729 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024606 B = 0.004904 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.655600 B = 5708.263010 C = 6245.073413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.079 4.079 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.119 4.119 8 C -0.074 4.074 9 C -0.100 4.100 10 C 0.506 3.494 11 O -0.575 6.575 12 N -0.704 5.704 13 C 0.251 3.749 14 H 0.018 0.982 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.031 3.969 18 N -0.933 5.933 19 Si 0.934 3.066 20 H -0.260 1.260 21 H -0.294 1.294 22 H -0.264 1.264 23 C -0.137 4.137 24 C -0.132 4.132 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.406 0.594 37 H 0.270 0.730 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.032 0.968 41 H 0.056 0.944 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 15.021 -13.042 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C -0.079 4.079 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.137 4.137 8 C -0.075 4.075 9 C -0.140 4.140 10 C 0.294 3.706 11 O -0.455 6.455 12 N -0.354 5.354 13 C 0.146 3.854 14 H 0.036 0.964 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.168 4.168 18 N -0.573 5.573 19 Si 0.762 3.238 20 H -0.186 1.186 21 H -0.221 1.221 22 H -0.188 1.188 23 C -0.175 4.175 24 C -0.189 4.189 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.241 0.759 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.552 14.843 -13.372 20.735 hybrid contribution 0.657 -0.605 0.535 1.041 sum -4.895 14.239 -12.837 19.786 Atomic orbital electron populations 1.21725 0.92965 1.02422 1.02605 1.20565 0.97483 0.92491 1.02191 1.19888 0.98784 0.96025 0.93207 1.21240 1.00311 0.95839 0.97592 1.21410 0.99299 0.94609 0.98998 1.21367 1.00478 1.00962 0.92324 1.21230 0.98827 0.94503 0.99164 1.19305 1.00344 0.94450 0.93393 1.20780 0.96523 1.00410 0.96242 1.20982 0.89782 0.79531 0.80353 1.90673 1.32939 1.64466 1.57460 1.46028 1.16955 1.48742 1.23639 1.18720 0.85053 0.88815 0.92801 0.96431 1.21313 0.94912 1.11962 1.28755 0.92416 1.25507 1.02696 0.94451 0.94185 1.69971 1.36411 1.18035 1.32842 0.86072 0.81261 0.76579 0.79907 1.18581 1.22101 1.18839 1.22202 0.98634 0.97636 0.99059 1.21740 1.00516 0.98294 0.98344 0.92163 0.91625 0.91689 0.90943 0.93204 0.84873 0.83956 0.84123 0.85242 0.85848 0.86675 0.75905 0.92118 0.91200 0.94075 0.94858 0.92513 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.72 71.98 0.70 -1.99 16 2 C -0.09 -2.25 5.38 29.85 0.16 -2.09 16 3 C -0.08 -2.08 5.13 -19.87 -0.10 -2.18 16 4 C -0.13 -3.06 9.68 22.27 0.22 -2.85 16 5 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 6 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 7 C -0.12 -2.91 9.68 22.27 0.22 -2.69 16 8 C -0.07 -1.99 4.37 -19.87 -0.09 -2.08 16 9 C -0.10 -2.55 5.16 29.10 0.15 -2.40 16 10 C 0.51 17.96 5.61 87.66 0.49 18.45 16 11 O -0.58 -24.80 13.17 -3.04 -0.04 -24.84 16 12 N -0.70 -26.78 5.02 -446.11 -2.24 -29.02 16 13 C 0.25 11.82 1.83 44.24 0.08 11.90 16 14 H 0.02 0.95 6.63 -2.39 -0.02 0.93 16 15 C -0.53 -28.87 9.31 25.60 0.24 -28.64 16 16 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 17 C 0.03 1.77 5.45 84.65 0.46 2.23 16 18 N -0.93 -56.07 13.96 21.45 0.30 -55.77 16 19 Si 0.93 45.30 24.41 68.60 1.67 46.98 16 20 H -0.26 -11.87 6.83 99.48 0.68 -11.19 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.26 -12.83 6.53 99.48 0.65 -12.18 16 23 C -0.14 -5.92 5.11 30.60 0.16 -5.77 16 24 C -0.13 -5.14 8.52 71.98 0.61 -4.53 16 25 H 0.06 1.10 6.83 -2.39 -0.02 1.09 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.71 8.05 -2.38 -0.02 1.69 16 29 H 0.05 1.50 6.41 -2.39 -0.02 1.49 16 30 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.12 2.43 8.05 -2.39 -0.02 2.41 16 35 H 0.12 2.57 5.63 -2.38 -0.01 2.56 16 36 H 0.41 13.41 8.54 -92.70 -0.79 12.62 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.04 1.88 3.22 -2.39 -0.01 1.87 16 40 H 0.03 1.40 7.85 -2.39 -0.02 1.39 16 41 H 0.06 2.15 5.65 -2.39 -0.01 2.14 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -68.17 330.03 3.58 -64.59 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.14 Total: 25.73 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 3.74 Total: -27.66 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -1.94 Total: -84.79 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.04 Total: -24.84 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.67 Total: 46.98 kcal Total: -68.17 3.58 -64.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188801454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.017 kcal (2) G-P(sol) polarization free energy of solvation -68.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds