Wall clock time and date at job start Mon Mar 30 2020 02:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.50700 * 109.47054 * 85.17110 * 9 8 3 11 11 O 1.21283 * 119.99867 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00248 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00334 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47253 * 34.99920 * 13 12 10 15 15 C 1.50702 * 109.47573 * 155.00156 * 13 12 10 16 16 H 1.08001 * 119.99599 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00338 * 179.97438 * 15 13 12 18 18 N 1.31513 * 119.99615 * 359.97438 * 17 15 13 19 19 Si 1.86791 * 120.00144 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47178 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47242 * 120.00070 * 19 17 15 22 22 H 1.48502 * 109.47140 * 240.00294 * 19 17 15 23 23 C 1.53006 * 109.46794 * 274.99798 * 13 12 10 24 24 C 1.52998 * 109.46904 * 65.00171 * 23 13 12 25 25 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 26 26 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 28 28 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 29 29 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 30 30 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 32 32 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 35 35 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 36 36 H 0.97005 * 120.00026 * 0.02562 * 12 10 9 37 37 H 0.97001 * 119.99672 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47125 * 184.99453 * 23 13 12 39 39 H 1.08994 * 109.47385 * 304.99629 * 23 13 12 40 40 H 1.09000 * 109.47060 * 179.97438 * 24 23 13 41 41 H 1.09005 * 109.47332 * 299.99658 * 24 23 13 42 42 H 1.09000 * 109.47422 * 59.99954 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 2.9975 0.6381 2.9854 11 8 4.0263 0.6220 2.3435 12 7 2.9120 -0.0536 4.1389 13 6 4.0621 -0.8247 4.6177 14 1 4.9829 -0.3014 4.3602 15 6 3.9745 -0.9808 6.1140 16 1 3.1449 -0.5492 6.6543 17 6 4.9529 -1.6755 6.7931 18 7 5.9623 -2.2022 6.1349 19 14 4.8447 -1.8684 8.6479 20 1 3.6224 -1.1879 9.1459 21 1 4.7839 -3.3115 8.9928 22 1 6.0423 -1.2585 9.2797 23 6 4.0594 -2.2061 3.9598 24 6 4.2734 -2.0535 2.4525 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2578 1.5015 -2.1247 31 1 3.0694 3.8259 -2.1255 32 1 3.3047 5.0489 -0.0011 33 1 2.7284 3.9470 2.1240 34 1 1.5501 2.1866 3.2337 35 1 0.9680 0.7630 2.3376 36 1 2.0890 -0.0410 4.6522 37 1 6.6508 -2.6907 6.6127 38 1 4.8623 -2.8108 4.3813 39 1 3.1022 -2.6941 4.1433 40 1 4.2720 -3.0376 1.9839 41 1 3.4706 -1.4487 2.0309 42 1 5.2307 -1.5655 2.2690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188801479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:15 Heat of formation + Delta-G solvation = -53.716930 kcal Electronic energy + Delta-G solvation = -21671.819313 eV Core-core repulsion = 18615.016204 eV Total energy + Delta-G solvation = -3056.803109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17788 -39.80904 -36.88973 -35.14954 -34.26712 -33.57324 -32.55561 -30.34758 -29.33783 -27.99382 -25.07353 -24.58986 -23.12575 -22.14743 -21.27267 -20.92099 -18.87274 -17.44742 -17.37365 -17.14163 -16.89407 -16.12736 -15.82960 -15.74214 -14.86216 -14.64726 -14.54149 -14.31346 -14.08536 -13.89993 -13.75516 -13.51413 -13.17046 -12.90630 -12.87008 -12.74886 -12.64414 -12.59596 -12.16451 -12.09271 -12.05717 -11.67132 -11.57623 -11.44593 -11.02484 -10.65470 -10.49301 -9.63441 -9.56695 -9.41212 -8.15303 -6.32602 0.49527 0.56436 1.43831 1.45214 1.56817 1.94723 2.37599 2.66237 3.05845 3.14551 3.75446 3.90449 4.05208 4.14319 4.27719 4.32969 4.39060 4.49774 4.53360 4.56787 4.59276 4.68047 4.75422 4.79231 4.81354 5.05726 5.06324 5.13461 5.20735 5.27544 5.29321 5.42108 5.47871 5.58186 5.64573 5.66443 5.67074 5.81383 5.82798 5.96680 6.19416 6.20459 6.76946 7.07116 7.35524 7.67745 8.90142 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027312 B = 0.004394 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.955317 B = 6370.858733 C = 6661.801690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.078 4.078 4 C -0.131 4.131 5 C -0.126 4.126 6 C -0.135 4.135 7 C -0.124 4.124 8 C -0.074 4.074 9 C -0.099 4.099 10 C 0.502 3.498 11 O -0.580 6.580 12 N -0.709 5.709 13 C 0.280 3.720 14 H -0.006 1.006 15 C -0.547 4.547 16 H 0.072 0.928 17 C 0.015 3.985 18 N -0.916 5.916 19 Si 0.969 3.031 20 H -0.260 1.260 21 H -0.279 1.279 22 H -0.285 1.285 23 C -0.120 4.120 24 C -0.122 4.122 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.403 0.597 37 H 0.264 0.736 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.699 7.868 -11.137 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C -0.078 4.078 4 C -0.149 4.149 5 C -0.144 4.144 6 C -0.153 4.153 7 C -0.142 4.142 8 C -0.075 4.075 9 C -0.139 4.139 10 C 0.289 3.711 11 O -0.461 6.461 12 N -0.359 5.359 13 C 0.176 3.824 14 H 0.012 0.988 15 C -0.585 4.585 16 H 0.090 0.910 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.794 3.206 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.211 1.211 23 C -0.159 4.159 24 C -0.179 4.179 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.238 0.762 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.808 7.741 -11.545 18.239 hybrid contribution 0.373 -0.278 1.259 1.342 sum -11.436 7.463 -10.286 17.096 Atomic orbital electron populations 1.21726 0.92847 1.02531 1.02567 1.20585 0.97527 0.92219 1.02328 1.19910 0.98718 0.96205 0.93014 1.21258 1.00221 0.95757 0.97675 1.21412 0.99348 0.94717 0.98880 1.21357 1.00552 1.00972 0.92370 1.21237 0.99105 0.94785 0.99076 1.19327 1.00218 0.94332 0.93604 1.20784 0.96662 1.00362 0.96062 1.20997 0.89796 0.79549 0.80776 1.90677 1.33227 1.64749 1.57446 1.46278 1.17374 1.49087 1.23122 1.18306 0.83853 0.87749 0.92479 0.98828 1.21639 1.09555 1.35183 0.92094 0.91009 1.25769 0.94606 0.94747 1.03391 1.70065 1.12103 1.35983 1.37321 0.85340 0.78237 0.77854 0.79152 1.18356 1.20473 1.21142 1.21769 1.00613 0.99738 0.93768 1.21685 1.00143 0.99038 0.97077 0.91722 0.91398 0.92209 0.90885 0.92924 0.84635 0.83858 0.84246 0.85703 0.86402 0.86294 0.76243 0.92697 0.91287 0.94007 0.93838 0.93225 0.96034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.72 71.98 0.70 -1.91 16 2 C -0.09 -2.23 5.38 29.85 0.16 -2.07 16 3 C -0.08 -2.15 5.13 -19.87 -0.10 -2.25 16 4 C -0.13 -3.20 9.68 22.27 0.22 -2.99 16 5 C -0.13 -2.84 10.05 22.27 0.22 -2.61 16 6 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 7 C -0.12 -3.38 9.68 22.27 0.22 -3.17 16 8 C -0.07 -2.15 4.37 -19.87 -0.09 -2.23 16 9 C -0.10 -2.73 5.16 29.10 0.15 -2.58 16 10 C 0.50 19.39 5.61 87.66 0.49 19.88 16 11 O -0.58 -27.64 13.17 -3.04 -0.04 -27.68 16 12 N -0.71 -28.77 5.02 -446.10 -2.24 -31.01 16 13 C 0.28 14.35 2.24 44.25 0.10 14.45 16 14 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 16 15 C -0.55 -28.87 8.73 25.60 0.22 -28.65 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 17 C 0.01 0.79 5.29 84.65 0.45 1.24 16 18 N -0.92 -52.79 11.29 21.45 0.24 -52.55 16 19 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 23 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 24 C -0.12 -5.56 8.51 71.98 0.61 -4.95 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.07 6.83 -2.39 -0.02 1.05 16 28 H 0.07 1.72 8.05 -2.38 -0.02 1.70 16 29 H 0.05 1.57 5.51 -2.39 -0.01 1.55 16 30 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.12 2.66 8.05 -2.39 -0.02 2.64 16 35 H 0.12 2.72 5.63 -2.38 -0.01 2.71 16 36 H 0.40 13.68 8.54 -92.70 -0.79 12.89 16 37 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.07 3.85 5.95 -2.39 -0.01 3.83 16 39 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 2.15 4.74 -2.38 -0.01 2.13 16 42 H 0.02 1.06 7.85 -2.39 -0.02 1.04 16 Total: -1.00 -67.76 334.97 3.95 -63.81 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.22 Total: 29.90 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.74 Total: -26.59 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.00 Total: -83.56 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.04 Total: -27.68 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -67.76 3.95 -63.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188801479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.092 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds